Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Reverse (-)

28202337 .. 28236739

Gene Structure 34403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG270200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAAGACATAACCAGAGAGCTGGGCAAAGACATGGCAAATGCAAAGAGCAACCTTCAGGTTCTTGTGGTGGGTGGTACTGGATATATTGGGAGAAGGATTGTTAGTGCAAGCCTAGCACAAGGCTACCCGACTTATGTCCTTCAAAGGCCGGCAACGGAGATTGACCTCGATATTGAGAAACTGCAAATGCTCTTGTCGTTTAAGAAGCAAGGGGCTCATCTCGTGGAGGGTTCGTTTTCTGATATCCAAAGCCTTGTCGATGCCGTGAAACAAGTTGACGTTGTCATTTGCACCATGTCGGGGGTGCATTTCCGGAGTCACAACCTTTTGTTGCAGCTCAAGCTTGTTGAAGCCATTAAACAAGCTGGAAATGTTAAGCGCTTCTTGCCATCAGAGTTTGGTTTGGACCCAGAGCGTATGGGACATGCACTTGAACCAGGAAGAGTAACATTTGATGAGAAAATGGTGATCAGAAAGGCAATAGAAGACGCCAACATCCCCTTCACTTATGTGTGTGGTGCTGGCTTCGCCGGTTATTTTGCAGGCAATCTCTCTCAGATGGGAACACTTGTTCCTCGGAAGGACAAAGTTCTTATTTATGGAGATGGCAACACTAAAGTATCTTTCATGGACGAAGATGACATCGGAACCTATACAATCAAGACAATAGATGATCCGCGAACTTTGAACAAAACATTGTATCTTCTTCCGCCCGAAAACCTACTCACTCAAAGACAATTGGTGGACATTTGGGAAAATCTTGTTGGAAAGAAACTAGAGAAAATTTCTCTTTCTAAAGAAGACCTCCTTGCCTCTATGAAAGGTATGGACTATGCAGGCCAGGTCGGGGTGGGGCATTTCTATCACATTTTCTATGAAGGCTCTTTGACAAACTTCGAAATAGGGGAGGAAGGAGAAGAAGCTTCAAAGCTTTATCCAGAAGTGAAATACACCCGCATGGATGAATACTTGAAAATTTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

329

Amino Acids

36.78

Weight (kDa)

5.41

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	20 - 325	1e-64	NmrA-like family
Epimerase	PF01370	21 - 130	8.3e-09	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	25 - 173	1.1e-10	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	682
AccIII	TCCGGA	1 cut(s)	315
AciI	CCGC	3 cut(s)	680, 713, 958
AclWI	GGATC	1 cut(s)	671
AcsI	RAATTY	2 cut(s)	786, 978
AcuI	CTGAAG	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	1 cut(s)	79
AfeI	AGCGCT	1 cut(s)	383
AfiI	CCNNNNNNNGG	2 cut(s)	303, 850
AgsI	TTSAA	6 cut(s)	146, 353, 437, 691, 930, 976
AjnI	CCWGG	2 cut(s)	439, 843
AjuI	GAANNNNNNNTTGG	4 cut(s)	488, 520, 750, 782
AleI	CACNNNNGTG	1 cut(s)	512
AloI	GAACNNNNNNTCC	4 cut(s)	558, 559, 590, 591
AluBI	AGCT	6 cut(s)	22, 340, 346, 368, 926, 934
AluI	AGCT	6 cut(s)	22, 340, 346, 368, 926, 934
AlwI	GGATC	1 cut(s)	671
Aor13HI	TCCGGA	1 cut(s)	315
Aor51HI	AGCGCT	1 cut(s)	383
AoxI	GGCC	2 cut(s)	149, 841
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	2 cut(s)	786, 978
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	1 cut(s)	481
AsuII	TTCGAA	1 cut(s)	900
AvaII	GGWCC	1 cut(s)	409
BaeI	ACNNNNGTAYC	2 cut(s)	606, 639
BanII	GRGCYC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	224
BbsI	GAAGAC	3 cut(s)	12, 495, 810
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	3 cut(s)	400, 556, 602
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	2 cut(s)	441, 845
BclI	TGATCA	1 cut(s)	471
BfaI	CTAG	2 cut(s)	116, 779
BfoI	RGCGCY	1 cut(s)	385
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	2 cut(s)	441, 845
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	2 cut(s)	411, 652
BmrFI	CCNGG	2 cut(s)	441, 845
BmsI	GCATC	1 cut(s)	253
BoxI	GACNNNNGTC	1 cut(s)	137
BpiI	GAAGAC	3 cut(s)	12, 495, 810
Bpu14I	TTCGAA	1 cut(s)	900
BpuEI	CTTGAG	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 850
Bse118I	RCCGGY	2 cut(s)	151, 533
Bse1I	ACTGG	1 cut(s)	85
BseAI	TCCGGA	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	441, 845
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	498, 970
BseLI	CCNNNNNNNGG	2 cut(s)	303, 850
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	349
BseYI	CCCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	682
BshFI	GGCC	2 cut(s)	151, 843
BsiSI	CCGG	3 cut(s)	152, 316, 534
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	303, 850
BsmFI	GGGAC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	151, 843
Bsp119I	TTCGAA	1 cut(s)	900
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp13I	TCCGGA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	471, 676
BspACI	CCGC	3 cut(s)	680, 713, 958
BspANI	GGCC	2 cut(s)	151, 843
BspCNI	CTCAG	1 cut(s)	571
BspEI	TCCGGA	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	682
BspLI	GGNNCC	2 cut(s)	411, 652
BspPI	GGATC	1 cut(s)	671
BspT104I	TTCGAA	1 cut(s)	900
BsrFI	RCCGGY	2 cut(s)	151, 533
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	2 cut(s)	151, 533
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	2 cut(s)	471, 676
BssNI	GRCGYC	1 cut(s)	492
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	441, 845
Bst6I	CTCTTC	1 cut(s)	439
BstACI	GRCGYC	1 cut(s)	492
BstBI	TTCGAA	1 cut(s)	900
BstC8I	GCNNGC	5 cut(s)	112, 153, 526, 547, 841
BstDEI	CTNAG	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	498, 970
BstFNI	CGCG	1 cut(s)	682
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	2 cut(s)	474, 679
BstMBI	GATC	2 cut(s)	471, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 343, 388, 530
BstNI	CCWGG	2 cut(s)	441, 845
BstNSI	RCATGY	1 cut(s)	431
BstPAI	GACNNNNGTC	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	439, 843
BstUI	CGCG	1 cut(s)	682
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	3 cut(s)	12, 495, 810
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	151, 843
BtsCI	GGATG	2 cut(s)	498, 970
Cac8I	GCNNGC	5 cut(s)	112, 153, 526, 547, 841
CfoI	GCGC	1 cut(s)	384
Cfr10I	RCCGGY	2 cut(s)	151, 533
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	5 cut(s)	34, 298, 428, 631, 961
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	2 cut(s)	473, 678
DpnII	GATC	2 cut(s)	471, 676
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
EciI	GGCGGA	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	409
Eco47III	AGCGCT	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	439, 843
EcoRV	GATATC	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	988
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	5 cut(s)	37, 301, 431, 634, 964
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 795, 827
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	5 cut(s)	33, 297, 427, 630, 960
FauI	CCCGC	1 cut(s)	965
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	2 cut(s)	485, 977
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	2 cut(s)	116, 779
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	1 cut(s)	338
GsaI	CCCAGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	2 cut(s)	151, 843
HapII	CCGG	3 cut(s)	152, 316, 534
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	5 cut(s)	37, 301, 431, 634, 964
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	3 cut(s)	344, 924, 932
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	3 cut(s)	152, 316, 534
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	2 cut(s)	280, 748
Hpy188I	TCNGA	6 cut(s)	244, 397, 476, 561, 582, 650
Hpy188III	TCNNGA	3 cut(s)	316, 664, 941
Hpy8I	GTNNAC	2 cut(s)	280, 748
HpyAV	CCTTC	7 cut(s)	65, 90, 152, 514, 577, 875, 908
HpyCH4IV	ACGT	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 343, 388, 530
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	5 cut(s)	37, 301, 431, 634, 964
HspAI	GCGC	1 cut(s)	382
Kpn2I	TCCGGA	1 cut(s)	315
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	471, 676
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	116, 779
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	320, 448
MalI	GATC	2 cut(s)	473, 678
MboI	GATC	2 cut(s)	471, 676
MboII	GAAGA	8 cut(s)	17, 456, 500, 650, 698, 701, 815, 932
MfeI	CAATTG	1 cut(s)	740
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	3 cut(s)	740, 786, 978
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	748
MnlI	CCTC	6 cut(s)	179, 223, 588, 818, 826, 904
Mph1103I	ATGCAT	1 cut(s)	988
MroI	TCCGGA	1 cut(s)	315
MroNI	GCCGGC	1 cut(s)	151
MseI	TTAA	3 cut(s)	204, 360, 378
MslI	CAYNNNNRTG	2 cut(s)	512, 959
MspI	CCGG	3 cut(s)	152, 316, 534
MspR9I	CCNGG	2 cut(s)	441, 845
MunI	CAATTG	1 cut(s)	740
MvaI	CCWGG	2 cut(s)	441, 845
MvnI	CGCG	1 cut(s)	682
MwoI	GCNNNNNNNGC	4 cut(s)	116, 343, 388, 530
NaeI	GCCGGC	1 cut(s)	153
NdeII	GATC	2 cut(s)	471, 676
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	5 cut(s)	37, 301, 431, 634, 964
NlaIV	GGNNCC	2 cut(s)	411, 652
NmuCI	GTSAC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	988
NspI	RCATGY	1 cut(s)	431
NspV	TTCGAA	1 cut(s)	900
OliI	CACNNNNGTG	1 cut(s)	512
PdiI	GCCGGC	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PshAI	GACNNNNGTC	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	439, 843
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	2 cut(s)	439, 843
PspN4I	GGNNCC	2 cut(s)	411, 652
PspPI	GGNCC	1 cut(s)	409
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	2 cut(s)	512, 959
SaqAI	TTAA	3 cut(s)	204, 360, 378
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	471, 676
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	2 cut(s)	441, 845
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	900
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	2 cut(s)	512, 959
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	740, 786, 978
SsiI	CCGC	3 cut(s)	680, 713, 958
SspMI	CTAG	2 cut(s)	116, 779
StyD4I	CCNGG	2 cut(s)	439, 843
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	3 cut(s)	171, 261, 900
TasI	AATT	3 cut(s)	740, 786, 978
Tru1I	TTAA	3 cut(s)	204, 360, 378
Tru9I	TTAA	3 cut(s)	204, 360, 378
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	4 cut(s)	619, 836, 894, 981
TspGWI	ACGGA	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	2 cut(s)	786, 978
XceI	RCATGY	1 cut(s)	431
XspI	CTAG	2 cut(s)	116, 779
Zsp2I	ATGCAT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.