FvH4_5g23690

Isoflavone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001108
Physical Location & Seq
Reverse (-)
15038910 .. 15039622
713 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23690.t1

Sequence Viewer

Length: 213 bp
ATGCTGTTCTCGTTTGAGAAGCAAGGGGCTCACCTCGTCGAGGGTTTGTTTTCAGATTTCCAGAGCCTCGTCAACGCTGTCAAGCTAGGTGACGTGGTCATATGCACATTGTCGGGGACGCATTTCCGGAGTCACAACATTATGTTGCAGCTCAAGCTTGTAGAAGCCATTAAAGAAGCTGGAAATGTTAAGCCCCTGCTGGTCCCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

71

Amino Acids

7.68

Weight (kDa)

6.81

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 4 - 64 9.7e-10 NmrA-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 40
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 4 cut(s) 85, 151, 157, 179
AluI AGCT 4 cut(s) 85, 151, 157, 179
Aor13HI TCCGGA 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 23, 101
AvaII GGWCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 160
BfaI CTAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 2 cut(s) 130, 188
BslI CCNNNNNNNGG 1 cut(s) 40
BsmFI GGGAC 2 cut(s) 130, 188
Bsp1286I GDGCHC 1 cut(s) 31
Bsp13I TCCGGA 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 160
BtrI CACGTC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 1 cut(s) 127
CviAII CATG 1 cut(s) 210
CviJI RGCY 8 cut(s) 29, 66, 85, 151, 157, 167, 179, 193
CviKI_1 RGCY 8 cut(s) 29, 66, 85, 151, 157, 167, 179, 193
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 202
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 1 cut(s) 213
FaiI YATR 4 cut(s) 101, 103, 143, 211
FaqI GGGAC 2 cut(s) 130, 188
FatI CATG 1 cut(s) 209
FauNDI CATATG 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 149
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 213
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 1 cut(s) 130
HpaII CCGG 1 cut(s) 127
HphI GGTGA 2 cut(s) 23, 101
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 61, 127
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 105, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 213
Kpn2I TCCGGA 1 cut(s) 126
LpnPI CCDG 5 cut(s) 74, 140, 165, 185, 209
Lsp1109I GCAGC 1 cut(s) 160
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 89, 131
MhlI GDGCHC 1 cut(s) 31
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 3 cut(s) 34, 44, 77
MroI TCCGGA 1 cut(s) 126
MseI TTAA 2 cut(s) 171, 189
MspI CCGG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeI CATATG 1 cut(s) 101
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 89, 131
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 202
PsyI GACNNNGTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 171, 189
SatI GCNGC 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 31
SetI ASST 7 cut(s) 36, 87, 91, 96, 153, 159, 181
SinI GGWCC 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SspMI CTAG 1 cut(s) 86
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 39
Tru1I TTAA 2 cut(s) 171, 189
Tru9I TTAA 2 cut(s) 171, 189
TseFI GTSAC 2 cut(s) 89, 131
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 2 cut(s) 89, 131
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 202
XagI CCTNNNNNAGG 1 cut(s) 38
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.