Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Forward (+)

2638657 .. 2641390

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G023600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCTGGGGCTCATAATCGGAGTCACAACAATTTGATGCAGCTCAAGCTTGTTCAAGCTATCAAAGAAGCCGGAAATATTAAGCGTTTCTTGCCATCAGAGTTCGGTTTCGATCCAGCACGTATGGGACATGCACTTGAACCTGGAAGAGTTACATTTGATGAGAAGATGATAGTGAGAAAGGCAATACAAGATGCTAAAATTCCTTTCACTTATGTATGTGGCGCCGCATTCGCCAGCTATTTTGCCGGCAACCTTTCTCAGATGGGAACACTCTTCCCTCCAAAGGAAAAGGTGCTTATTTATGGAGATGGTAACGCTAAAGTAACTATTTTGGAGGAAGATGACATCGCAGCATATACAATCAAAACAATAGATGATCCGCGAACATTGAACAAAACACTGTACCTTCGTCCACCCGAAAACGAACTCAGTCAAAAGCAATTGGTCGAGATGTGGGAGAACCTAATAGGCAAGAAACTAGAACATATTTCCATTTCTGAACAAGACTTCCTTGCCTCTATGAAAGGTATGGACTTTGCAGGCCGGGTAGGAGTGGGGCATTTCTACCACATGTTCTATGAAGGCGCTCTGACAAACTTCGAAATCGGGGAAGAAGGAGAAGAAGCTTCAAAGCTTTACCCAGAAGTGAAATACACCCGCATGGATGAATACTTAATACTTTATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

231

Amino Acids

26.08

Weight (kDa)

5.58

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccII	CGCG	1 cut(s)	385
AciI	CCGC	3 cut(s)	228, 383, 661
AclWI	GGATC	2 cut(s)	107, 374
AcsI	RAATTY	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	4 cut(s)	56, 140, 394, 633
AjnI	CCWGG	1 cut(s)	142
AloI	GAACNNNNNNTCC	2 cut(s)	495, 527
AluBI	AGCT	6 cut(s)	43, 49, 59, 240, 629, 637
AluI	AGCT	6 cut(s)	43, 49, 59, 240, 629, 637
AlwI	GGATC	2 cut(s)	107, 374
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	2 cut(s)	40, 353
ApoI	RAATTY	1 cut(s)	201
AspLEI	GCGC	2 cut(s)	227, 590
AsuC2I	CCSGG	1 cut(s)	548
AsuII	TTCGAA	1 cut(s)	603
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	52, 365
BccI	CCATC	3 cut(s)	103, 259, 305
BciT130I	CCWGG	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	548
BfaI	CTAG	1 cut(s)	482
BfoI	RGCGCY	2 cut(s)	228, 591
BisI	GCNGC	3 cut(s)	41, 228, 354
BlsI	GCNGC	3 cut(s)	42, 229, 355
Bme1390I	CCNGG	2 cut(s)	144, 548
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	144, 548
BmsI	GCATC	2 cut(s)	27, 184
Bpu14I	TTCGAA	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	548
BsaAI	YACGTR	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	275, 445
BseXI	GCAGC	2 cut(s)	52, 365
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	72, 249, 547
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	546
Bsp119I	TTCGAA	1 cut(s)	603
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	112, 379
BspACI	CCGC	3 cut(s)	228, 383, 661
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	2 cut(s)	274, 444
BspFNI	CGCG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	2 cut(s)	107, 374
BspT104I	TTCGAA	1 cut(s)	603
BspT107I	GGYRCC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	2 cut(s)	112, 379
BssNI	GRCGYC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	2 cut(s)	142, 281
BstACI	GRCGYC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	603
BstC8I	GCNNGC	3 cut(s)	238, 250, 544
BstDEI	CTNAG	2 cut(s)	261, 431
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	385
BstH2I	RGCGCY	2 cut(s)	228, 591
BstHHI	GCGC	2 cut(s)	227, 590
BstKTI	GATC	2 cut(s)	115, 382
BstMBI	GATC	2 cut(s)	112, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 91, 233
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	2 cut(s)	134, 577
BstSCI	CCNGG	2 cut(s)	142, 546
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	52, 365
BsuRI	GGCC	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	3 cut(s)	238, 250, 544
CfoI	GCGC	2 cut(s)	227, 590
Cfr10I	RCCGGY	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	4 cut(s)	131, 574, 664, 690
CviJI	RGCY	9 cut(s)	11, 43, 49, 59, 71, 240, 546, 629, 637
CviKI_1	RGCY	9 cut(s)	11, 43, 49, 59, 71, 240, 546, 629, 637
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	261, 431
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	2 cut(s)	114, 381
DpnII	GATC	2 cut(s)	112, 379
Eam1104I	CTCTTC	2 cut(s)	142, 281
EarI	CTCTTC	2 cut(s)	142, 281
Eco24I	GRGCYC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
FaeI	CATG	4 cut(s)	134, 577, 667, 693
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 498, 530
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	4 cut(s)	130, 573, 663, 689
FauI	CCCGC	1 cut(s)	668
Fnu4HI	GCNGC	3 cut(s)	41, 228, 354
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	41, 228, 354
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	2 cut(s)	226, 589
GluI	GCNGC	3 cut(s)	41, 228, 354
HaeII	RGCGCY	2 cut(s)	228, 591
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	3 cut(s)	72, 249, 547
HhaI	GCGC	2 cut(s)	227, 590
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	4 cut(s)	134, 577, 667, 693
Hin6I	GCGC	2 cut(s)	225, 588
HinP1I	GCGC	2 cut(s)	225, 588
HindIII	AAGCTT	3 cut(s)	47, 627, 635
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	3 cut(s)	72, 249, 547
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	5 cut(s)	21, 100, 264, 502, 594
Hpy188III	TCNNGA	1 cut(s)	451
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	3 cut(s)	419, 578, 611
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	40, 134, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 91, 233
HpyF3I	CTNAG	2 cut(s)	261, 431
HpySE526I	ACGT	1 cut(s)	121
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	134, 577, 667, 693
HspAI	GCGC	2 cut(s)	225, 588
KasI	GGCGCC	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	112, 379
LpnPI	CCDG	9 cut(s)	85, 129, 129, 156, 250, 262, 528, 560, 657
Lsp1109I	GCAGC	2 cut(s)	52, 365
LweI	GCATC	2 cut(s)	27, 184
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	4 cut(s)	23, 151, 314, 325
MalI	GATC	2 cut(s)	114, 381
MboI	GATC	2 cut(s)	112, 379
MboII	GAAGA	6 cut(s)	159, 178, 268, 353, 626, 635
MfeI	CAATTG	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	3 cut(s)	31, 201, 443
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	3 cut(s)	291, 331, 529
MroNI	GCCGGC	1 cut(s)	248
MseI	TTAA	2 cut(s)	81, 677
MslI	CAYNNNNRTG	1 cut(s)	662
MspI	CCGG	3 cut(s)	72, 249, 547
MspR9I	CCNGG	2 cut(s)	144, 548
MunI	CAATTG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	3 cut(s)	46, 91, 233
NaeI	GCCGGC	1 cut(s)	250
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	2 cut(s)	112, 379
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	4 cut(s)	134, 577, 667, 693
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	23
NspI	RCATGY	2 cut(s)	134, 577
NspV	TTCGAA	1 cut(s)	603
PciI	ACATGT	1 cut(s)	573
PctI	GAATGC	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	42, 229, 355
PleI	GAGTC	1 cut(s)	30
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	122
PscI	ACATGT	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	226
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	2 cut(s)	81, 677
SatI	GCNGC	3 cut(s)	41, 228, 354
Sau3AI	GATC	2 cut(s)	112, 379
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	144, 548
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	27, 184
SfoI	GGCGCC	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	31, 201, 443
SsiI	CCGC	3 cut(s)	228, 383, 661
SspDI	GGCGCC	1 cut(s)	224
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	142, 546
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	3 cut(s)	111, 450, 603
TasI	AATT	3 cut(s)	31, 201, 443
TauI	GCSGC	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	81, 677
Tru9I	TTAA	2 cut(s)	81, 677
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	2 cut(s)	40, 353
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	3 cut(s)	539, 597, 684
TspRI	CASTG	1 cut(s)	408
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	2 cut(s)	134, 577
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.