Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017711.1

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Reverse (-)

663 .. 1517

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017711.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggggagaaggattatcaaggcaagactagcaacaggccaccagacttatgttctgcaaaggccggcgccagagatcggcctcgacattgagaagctacaaatgctcttctcgtttaagaagcaaggggctcacctcgtcgagggttcgttttcagatttccagagcctcgtcgacgctgtcaagctagttgatgttgtcatatgcaccatgtcggggacacatatccggagtcacaacattatgttgcggctcaagcttgttgaagccattaaagaagctggaaatgttaaggttaatggttcgggtgatggagaaaaagccacggccccctttcaaatgcaaaaagaaacagcgacgtcctactcccaacagccacatagtatacttgttagaggaaagagggatcccggaaagagtaggcaaagagtagctgtcatcatcgataaacaatggtgtaaaatttgtagacggctgcgaggagatcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

163

Amino Acids

18.24

Weight (kDa)

10.01

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	67
AccI	GTMKAC	3 cut(s)	174, 385, 469
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	2 cut(s)	401, 414
AcsI	RAATTY	1 cut(s)	462
AcyI	GRCGYC	2 cut(s)	68, 359
AfiI	CCNNNNNNNGG	3 cut(s)	77, 142, 216
AgsI	TTSAA	2 cut(s)	266, 338
AluBI	AGCT	5 cut(s)	97, 187, 259, 281, 434
AluI	AGCT	5 cut(s)	97, 187, 259, 281, 434
AlwI	GGATC	2 cut(s)	401, 414
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	4 cut(s)	37, 62, 79, 327
ApeKI	GCWGC	1 cut(s)	475
ApoI	RAATTY	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	125, 320
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	2 cut(s)	342, 488
BcnI	CCSGG	1 cut(s)	411
BfaI	CTAG	2 cut(s)	29, 188
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	2 cut(s)	251, 476
BlsI	GCNGC	2 cut(s)	252, 477
Bme1390I	CCNGG	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	3 cut(s)	69, 330, 408
BmrFI	CCNGG	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	444
BsaHI	GRCGYC	2 cut(s)	68, 359
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 142, 216
Bse118I	RCCGGY	1 cut(s)	64
BseAI	TCCGGA	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	77, 142, 216
BseXI	GCAGC	1 cut(s)	462
BshFI	GGCC	4 cut(s)	39, 64, 81, 329
BshNI	GGYRCC	1 cut(s)	67
BshVI	ATCGAT	1 cut(s)	444
BsiSI	CCGG	3 cut(s)	65, 229, 411
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	3 cut(s)	77, 142, 216
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	39, 64, 81, 329
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	75, 406, 484
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	4 cut(s)	39, 64, 81, 329
BspDI	ATCGAT	1 cut(s)	444
BspEI	TCCGGA	1 cut(s)	228
BspLI	GGNNCC	3 cut(s)	69, 330, 408
BspPI	GGATC	2 cut(s)	401, 414
BspQI	GCTCTTC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	3 cut(s)	75, 406, 484
BssNAI	GTATAC	1 cut(s)	386
BssNI	GRCGYC	2 cut(s)	68, 359
Bst1107I	GTATAC	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	113
BstACI	GRCGYC	2 cut(s)	68, 359
BstC8I	GCNNGC	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	324
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	3 cut(s)	78, 409, 487
BstMBI	GATC	3 cut(s)	75, 406, 484
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 103, 256
BstSCI	CCNGG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BstZ17I	GTATAC	1 cut(s)	386
Bsu15I	ATCGAT	1 cut(s)	444
BsuRI	GGCC	4 cut(s)	39, 64, 81, 329
BsuTUI	ATCGAT	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	328
ClaI	ATCGAT	1 cut(s)	444
CseI	GACGC	1 cut(s)	185
CviAII	CATG	1 cut(s)	211
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	3 cut(s)	77, 408, 486
DpnII	GATC	3 cut(s)	75, 406, 484
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	133
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
FaeI	CATG	1 cut(s)	214
FaiI	YATR	8 cut(s)	51, 203, 205, 212, 225, 245, 381, 386
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	203
FblI	GTMKAC	3 cut(s)	174, 385, 469
Fnu4HI	GCNGC	2 cut(s)	251, 476
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	251, 476
FspBI	CTAG	2 cut(s)	29, 188
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	251, 476
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	4 cut(s)	39, 64, 81, 329
HapII	CCGG	3 cut(s)	65, 229, 411
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	2 cut(s)	68, 359
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	3 cut(s)	65, 229, 411
HphI	GGTGA	2 cut(s)	125, 320
Hpy166II	GTNNAC	3 cut(s)	175, 386, 470
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	163, 229
Hpy8I	GTNNAC	3 cut(s)	175, 386, 470
Hpy99I	CGWCG	4 cut(s)	143, 176, 179, 361
HpyAV	CCTTC	1 cut(s)	3
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	3 cut(s)	58, 207, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 103, 256
HpySE526I	ACGT	1 cut(s)	359
Hsp92I	GRCGYC	2 cut(s)	68, 359
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	68
KasI	GGCGCC	1 cut(s)	67
Kpn2I	TCCGGA	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	75, 406, 484
LguI	GCTCTTC	1 cut(s)	113
LpnPI	CCDG	8 cut(s)	21, 56, 78, 84, 176, 242, 267, 424
Lsp1109I	GCAGC	1 cut(s)	462
MaeI	CTAG	2 cut(s)	29, 188
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	3 cut(s)	77, 408, 486
MboI	GATC	3 cut(s)	75, 406, 484
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	1 cut(s)	462
Mly113I	GGCGCC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	92, 136, 146, 179, 389, 396, 473
MroI	TCCGGA	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	64
MseI	TTAA	4 cut(s)	117, 273, 291, 297
MspI	CCGG	3 cut(s)	65, 229, 411
MspR9I	CCNGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	3 cut(s)	29, 103, 256
NaeI	GCCGGC	1 cut(s)	66
NarI	GGCGCC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	411
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	3 cut(s)	75, 406, 484
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	3 cut(s)	69, 330, 408
NmuCI	GTSAC	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	113
PdiI	GCCGGC	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	252, 477
PleI	GAGTC	1 cut(s)	240
PluTI	GGCGCC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	69, 330, 408
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	406
PsyI	GACNNNGTC	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	4 cut(s)	117, 273, 291, 297
SatI	GCNGC	2 cut(s)	251, 476
Sau3AI	GATC	3 cut(s)	75, 406, 484
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	8 cut(s)	99, 138, 189, 261, 283, 297, 362, 436
SfoI	GGCGCC	1 cut(s)	69
SgrDI	CGTCGACG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	1 cut(s)	250
SspDI	GGCGCC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	29, 188
StyD4I	CCNGG	1 cut(s)	409
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	4 cut(s)	84, 141, 174, 444
TasI	AATT	1 cut(s)	462
TauI	GCSGC	1 cut(s)	253
Tru1I	TTAA	4 cut(s)	117, 273, 291, 297
Tru9I	TTAA	4 cut(s)	117, 273, 291, 297
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	233
Tth111I	GACNNNGTC	1 cut(s)	179
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	462
XmiI	GTMKAC	3 cut(s)	174, 385, 469
XspI	CTAG	2 cut(s)	29, 188
ZraI	GACGTC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.