Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Reverse (-)

30038307 .. 30039931

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGGAGAAGGATTGTCAAGGCAAGACTAGCAGCAGGCCACCAGACTTATGTTCTGCAAAGGCCGGCGCCAGAGATCGGCCTCGACATTGAGAAGCTACAAATGCTCTTCTCGTTTAAGAAGCAAGGGGCTCACCTCGTCGAGGGTTCGTTTTCGGATTTCCAGAGCCTCGTTGACGCTGTCAAGCTAGTTGATGTTGTCATATGCACCATGTCGGGGACACATATCCGGAGTCACAACATTATGTTGCAGCTCAAGCTTGTTGAAGCCATTAAAGAAGCTGGAAATGTTAAGCGTTTCTTGCCATCAGAGTTTGTCCACTACTACACAAAAGGCTTCACGCGACGGTTTAAAACTGTCGTCTCACGTTTTGCATTTCCGTGGTCTATCGAGGCGTCGTCTGATGAAAGGCTGTCAGACGACGGTTTTCAACCGTCGTATACCGATCATTGGGACGACGGTTTGCAGCTAACTCCGTCGTCTGATGGACCGGCAGATCTGCCGACATGCTGTCGACAGAAATATGCTGTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

178

Amino Acids

20.08

Weight (kDa)

8.43

Isoelectric Point (pI)

59.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	2 - 107	4.9e-19	NmrA-like family
NAD_binding_10	PF13460	2 - 111	3.7e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccI	GTMKAC	2 cut(s)	440, 514
AccII	CGCG	1 cut(s)	343
AccIII	TCCGGA	1 cut(s)	228
AcyI	GRCGYC	2 cut(s)	68, 395
AfiI	CCNNNNNNNGG	4 cut(s)	77, 142, 216, 450
AgsI	TTSAA	2 cut(s)	266, 431
AhdI	GACNNNNNGTC	1 cut(s)	510
AluBI	AGCT	6 cut(s)	97, 187, 253, 259, 281, 469
AluI	AGCT	6 cut(s)	97, 187, 253, 259, 281, 469
Alw26I	GTCTC	1 cut(s)	367
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	3 cut(s)	37, 62, 79
ApeKI	GCWGC	3 cut(s)	32, 250, 466
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	44, 262, 478
BccI	CCATC	2 cut(s)	313, 479
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	29, 188
BfoI	RGCGCY	1 cut(s)	71
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	3 cut(s)	33, 251, 467
BlsI	GCNGC	3 cut(s)	34, 252, 468
Bme18I	GGWCC	1 cut(s)	488
BmeRI	GACNNNNNGTC	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	239
BsaHI	GRCGYC	2 cut(s)	68, 395
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 142, 216, 450
Bse118I	RCCGGY	2 cut(s)	64, 490
BseAI	TCCGGA	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	380
BseLI	CCNNNNNNNGG	4 cut(s)	77, 142, 216, 450
BseXI	GCAGC	3 cut(s)	44, 262, 478
Bsh1236I	CGCG	1 cut(s)	343
BshFI	GGCC	3 cut(s)	39, 64, 81
BshNI	GGYRCC	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	65, 229, 491
BslFI	GGGAC	2 cut(s)	232, 467
BslI	CCNNNNNNNGG	4 cut(s)	77, 142, 216, 450
BsmAI	GTCTC	1 cut(s)	367
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	232, 467
BsnI	GGCC	3 cut(s)	39, 64, 81
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	75, 445, 496
BspANI	GGCC	3 cut(s)	39, 64, 81
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	67
BsrFI	RCCGGY	2 cut(s)	64, 490
BssAI	RCCGGY	2 cut(s)	64, 490
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	3 cut(s)	75, 445, 496
BssNAI	GTATAC	1 cut(s)	441
BssNI	GRCGYC	2 cut(s)	68, 395
Bst1107I	GTATAC	1 cut(s)	441
Bst4CI	ACNGT	5 cut(s)	348, 358, 425, 435, 461
Bst6I	CTCTTC	1 cut(s)	113
BstACI	GRCGYC	2 cut(s)	68, 395
BstC8I	GCNNGC	2 cut(s)	37, 66
BstDSI	CCRYGG	1 cut(s)	380
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	3 cut(s)	78, 448, 499
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	3 cut(s)	75, 445, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 103, 256, 301
BstNSI	RCATGY	1 cut(s)	510
BstUI	CGCG	1 cut(s)	343
BstV1I	GCAGC	3 cut(s)	44, 262, 478
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BstZ17I	GTATAC	1 cut(s)	441
BsuRI	GGCC	3 cut(s)	39, 64, 81
BtgI	CCRYGG	1 cut(s)	380
Cac8I	GCNNGC	2 cut(s)	37, 66
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	2 cut(s)	64, 490
Cfr13I	GGNCC	1 cut(s)	488
CseI	GACGC	2 cut(s)	185, 384
CviAII	CATG	2 cut(s)	211, 507
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	3 cut(s)	77, 447, 498
DpnII	GATC	3 cut(s)	75, 445, 496
DraI	TTTAAA	1 cut(s)	352
DriI	GACNNNNNGTC	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	113
Eam1105I	GACNNNNNGTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	488
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	133
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	2 cut(s)	214, 510
FaiI	YATR	9 cut(s)	51, 203, 205, 212, 225, 245, 441, 508, 525
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	2 cut(s)	232, 467
FatI	CATG	2 cut(s)	210, 506
FauNDI	CATATG	1 cut(s)	203
FblI	GTMKAC	2 cut(s)	440, 514
Fnu4HI	GCNGC	3 cut(s)	33, 251, 467
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	3 cut(s)	33, 251, 467
FspBI	CTAG	2 cut(s)	29, 188
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	3 cut(s)	33, 251, 467
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	39, 64, 81
HapII	CCGG	3 cut(s)	65, 229, 491
HgaI	GACGC	2 cut(s)	185, 384
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	2 cut(s)	68, 395
Hin1II	CATG	2 cut(s)	214, 510
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	2 cut(s)	175, 515
HindII	GTYRAC	2 cut(s)	175, 515
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	3 cut(s)	65, 229, 491
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	4 cut(s)	175, 319, 441, 515
Hpy188I	TCNGA	5 cut(s)	157, 310, 403, 418, 484
Hpy188III	TCNNGA	2 cut(s)	163, 229
Hpy8I	GTNNAC	4 cut(s)	175, 319, 441, 515
Hpy99I	CGWCG	7 cut(s)	143, 348, 400, 425, 439, 461, 481
HpyAV	CCTTC	1 cut(s)	3
HpyCH4III	ACNGT	5 cut(s)	348, 358, 425, 435, 461
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	5 cut(s)	58, 207, 250, 374, 466
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 103, 256, 301
HpySE526I	ACGT	1 cut(s)	367
Hsp92I	GRCGYC	2 cut(s)	68, 395
Hsp92II	CATG	2 cut(s)	214, 510
HspAI	GCGC	1 cut(s)	68
KasI	GGCGCC	1 cut(s)	67
Kpn2I	TCCGGA	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	75, 445, 496
LguI	GCTCTTC	1 cut(s)	113
LpnPI	CCDG	8 cut(s)	21, 56, 78, 84, 176, 242, 267, 504
Lsp1109I	GCAGC	3 cut(s)	44, 262, 478
MaeI	CTAG	2 cut(s)	29, 188
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	3 cut(s)	77, 447, 498
MboI	GATC	3 cut(s)	75, 445, 496
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	133
Mly113I	GGCGCC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	5 cut(s)	92, 136, 146, 179, 385
MroI	TCCGGA	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	64
MseI	TTAA	4 cut(s)	117, 273, 291, 351
MslI	CAYNNNNRTG	1 cut(s)	379
MspI	CCGG	3 cut(s)	65, 229, 491
MvnI	CGCG	1 cut(s)	343
MwoI	GCNNNNNNNGC	4 cut(s)	29, 103, 256, 301
NaeI	GCCGGC	1 cut(s)	66
NarI	GGCGCC	1 cut(s)	68
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	3 cut(s)	75, 445, 496
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	214, 510
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	113
PdiI	GCCGGC	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	34, 252, 468
PleI	GAGTC	1 cut(s)	240
PluTI	GGCGCC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	496
PsyI	GACNNNGTC	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	379
SalI	GTCGAC	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	4 cut(s)	117, 273, 291, 351
SatI	GCNGC	3 cut(s)	33, 251, 467
Sau3AI	GATC	3 cut(s)	75, 445, 496
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	8 cut(s)	99, 138, 189, 255, 261, 283, 370, 471
SfoI	GGCGCC	1 cut(s)	69
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SspDI	GGCGCC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	29, 188
TaaI	ACNGT	5 cut(s)	348, 358, 425, 435, 461
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	4 cut(s)	84, 141, 390, 514
Tru1I	TTAA	4 cut(s)	117, 273, 291, 351
Tru9I	TTAA	4 cut(s)	117, 273, 291, 351
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	32, 250, 466
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	2 cut(s)	369, 465
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	488
XagI	CCTNNNNNAGG	1 cut(s)	140
XceI	RCATGY	1 cut(s)	510
XmiI	GTMKAC	2 cut(s)	440, 514
XspI	CTAG	2 cut(s)	29, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.