Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Reverse (-)

17030246 .. 17034992

Gene Structure 4747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1195700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGAAAGAGCAAGGTTCTTGTGGTAGGTTGTACTGGGTACGTGGGACGAAGGATTGTTAAGGCAAGCCTAGCCCTAGGTCACCCAACCTATGTCCTTCAAAGGCCAGAGATTGGCCTTGATATTGAGAAGCTGCAGATGCTCTTGTCCTTCAAAAAGCAAGGGGCTCACCTTGTGGAGGGCTCCTTTTCTGATCTCCAAAGCCTTGTTCGTGCTGTCAAGCTTGTCGACGTTGTCATTTGTACCATGTCCGGGGTGCATTTTAGGAGTCACAACATTTTGTTGCAGCTCAAGCTTGTTCAAGCTATCAAGGAAGCCGGAAATGTTAAGCGTTTCTTGCCATCAGAGTTCGGTCTCGACCCAGCACGTATGGGACATGCACTTGAACCAGGAAGAGTCACATTTGATGAGAAAATGGTAGTGAGAAAGGCAATACAAGATGCTAAAATCCCCTTCACTTATGTATGTGGTGCTGCTTTTGGGGGTTATTTTGCGGGCAACCTTTCGCAGATGGGGACTGTCCTTCCTCCAAGGGAGAAGGTGCTTATTTATGGAGATGGTAACTCTAAAGTCACTCTTATGGATGAAGAGGACATCGCAACATACACGATCAAGACGATAGATGATCCACGAACATTGAACAAAACATTGTACCTTCGTCCACCTGAAAACGTACTCTCGCAGAAGCAATTGGTCGAGATGTGGGAGAACCTTCTCGGAAAGAAACTAGAAAAGATCACCATTTCTAAACAAGACTTTCTTGCTTCTATGAAAGGTATGGACTATGCAGGCCAGGTAGGAGTGGGGCATTTTTACCACATTTTCTATGAAGGCAATCTGACAAACTTTGAAATCGAGGGAGAAGGAGTAGAAGAAGCTTCAAAGCTTTACTCAGAAGTGAAATATACACGCATGGATGAATACTTAAAATTATATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

314

Amino Acids

35.01

Weight (kDa)

8.52

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	3 - 309	7.9e-65	NmrA-like family
Epimerase	PF01370	6 - 113	5e-06	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	10 - 158	6.5e-09	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	494
AclWI	GGATC	1 cut(s)	620
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	5 cut(s)	34, 41, 244, 653, 675
AfiI	CCNNNNNNNGG	3 cut(s)	113, 178, 252
AgsI	TTSAA	7 cut(s)	101, 154, 302, 386, 640, 851, 882
AjnI	CCWGG	2 cut(s)	388, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	7 cut(s)	133, 223, 289, 295, 305, 878, 886
AluI	AGCT	7 cut(s)	133, 223, 289, 295, 305, 878, 886
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	620
AoxI	GGCC	3 cut(s)	104, 115, 790
ApeKI	GCWGC	3 cut(s)	133, 286, 473
AspA2I	CCTAGG	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	3 cut(s)	74, 161, 730
AvrII	CCTAGG	1 cut(s)	76
BanII	GRGCYC	2 cut(s)	169, 185
BbvI	GCAGC	3 cut(s)	120, 298, 460
BccI	CCATC	3 cut(s)	349, 505, 551
BciT130I	CCWGG	2 cut(s)	390, 794
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	3 cut(s)	71, 77, 728
BfmI	CTRYAG	1 cut(s)	134
BisI	GCNGC	3 cut(s)	134, 287, 474
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	3 cut(s)	135, 288, 475
Bme1390I	CCNGG	3 cut(s)	253, 390, 794
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	3 cut(s)	253, 390, 794
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	129, 430
BmuI	ACTGGG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	253
BsaAI	YACGTR	2 cut(s)	43, 368
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	3 cut(s)	76, 252, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	852, 882
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 178, 252
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	390, 794
BseDI	CCNNGG	3 cut(s)	76, 252, 530
BseGI	GGATG	2 cut(s)	589, 922
BseLI	CCNNNNNNNGG	3 cut(s)	113, 178, 252
BseMII	CTCAG	1 cut(s)	906
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	120, 298, 460
BseYI	CCCAGC	1 cut(s)	361
BshFI	GGCC	3 cut(s)	106, 117, 792
BsiSI	CCGG	2 cut(s)	252, 318
BslFI	GGGAC	3 cut(s)	60, 387, 529
BslI	CCNNNNNNNGG	3 cut(s)	113, 178, 252
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	3 cut(s)	60, 387, 529
BsnI	GGCC	3 cut(s)	106, 117, 792
Bso31I	GGTCTC	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	169, 185
Bsp143I	GATC	4 cut(s)	193, 609, 625, 735
BspACI	CCGC	1 cut(s)	494
BspANI	GGCC	3 cut(s)	106, 117, 792
BspCNI	CTCAG	1 cut(s)	905
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	76, 252, 530
BssMI	GATC	4 cut(s)	193, 609, 625, 735
BssT1I	CCWWGG	2 cut(s)	76, 530
Bst2UI	CCWGG	2 cut(s)	390, 794
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	2 cut(s)	388, 582
BstBAI	YACGTR	2 cut(s)	43, 368
BstC8I	GCNNGC	3 cut(s)	67, 496, 790
BstDEI	CTNAG	1 cut(s)	892
BstEII	GGTNACC	1 cut(s)	80
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	589, 922
BstKTI	GATC	4 cut(s)	196, 612, 628, 738
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	4 cut(s)	193, 609, 625, 735
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 139, 292, 337
BstNI	CCWGG	2 cut(s)	390, 794
BstNSI	RCATGY	1 cut(s)	380
BstPI	GGTNACC	1 cut(s)	80
BstSCI	CCNGG	3 cut(s)	251, 388, 792
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	120, 298, 460
BsuRI	GGCC	3 cut(s)	106, 117, 792
BtgZI	GCGATG	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	589, 922
Cac8I	GCNNGC	3 cut(s)	67, 496, 790
Csp6I	GTAC	5 cut(s)	33, 40, 243, 652, 674
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	4 cut(s)	247, 377, 913, 939
CviQI	GTAC	5 cut(s)	33, 40, 243, 652, 674
DdeI	CTNAG	1 cut(s)	892
DpnI	GATC	4 cut(s)	195, 611, 627, 737
DpnII	GATC	4 cut(s)	193, 609, 625, 735
DraIII	CACNNNGTG	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	388, 582
EarI	CTCTTC	2 cut(s)	388, 582
Eco130I	CCWWGG	2 cut(s)	76, 530
Eco24I	GRGCYC	2 cut(s)	169, 185
Eco31I	GGTCTC	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	388, 792
EcoT14I	CCWWGG	2 cut(s)	76, 530
EcoT22I	ATGCAT	1 cut(s)	940
EcoT38I	GRGCYC	2 cut(s)	169, 185
ErhI	CCWWGG	2 cut(s)	76, 530
FaeI	CATG	4 cut(s)	250, 380, 916, 942
FalI	AAGNNNNNCTT	6 cut(s)	320, 352, 561, 593, 744, 776
FaqI	GGGAC	3 cut(s)	60, 387, 529
FatI	CATG	4 cut(s)	246, 376, 912, 938
FauI	CCCGC	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	134, 287, 474
FokI	GGATG	2 cut(s)	596, 929
FriOI	GRGCYC	2 cut(s)	169, 185
Fsp4HI	GCNGC	3 cut(s)	134, 287, 474
FspBI	CTAG	3 cut(s)	71, 77, 728
GluI	GCNGC	3 cut(s)	134, 287, 474
GsaI	CCCAGC	1 cut(s)	365
HaeIII	GGCC	3 cut(s)	106, 117, 792
HapII	CCGG	2 cut(s)	252, 318
Hin1II	CATG	4 cut(s)	250, 380, 916, 942
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	4 cut(s)	221, 293, 876, 884
HinfI	GANTC	2 cut(s)	268, 396
HpaII	CCGG	2 cut(s)	252, 318
HphI	GGTGA	3 cut(s)	74, 161, 730
Hpy166II	GTNNAC	2 cut(s)	229, 662
Hpy188I	TCNGA	5 cut(s)	193, 346, 719, 840, 895
Hpy188III	TCNNGA	3 cut(s)	356, 613, 697
Hpy8I	GTNNAC	2 cut(s)	229, 662
Hpy99I	CGWCG	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	4 cut(s)	42, 231, 367, 672
HpyCH4V	TGCA	6 cut(s)	136, 259, 286, 380, 788, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 139, 292, 337
HpyF3I	CTNAG	1 cut(s)	892
HpySE526I	ACGT	4 cut(s)	42, 231, 367, 672
Hsp92II	CATG	4 cut(s)	250, 380, 916, 942
Kzo9I	GATC	4 cut(s)	193, 609, 625, 735
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	3 cut(s)	120, 298, 460
LweI	GCATC	2 cut(s)	129, 430
MaeI	CTAG	3 cut(s)	71, 77, 728
MaeII	ACGT	4 cut(s)	42, 231, 367, 672
MaeIII	GTNAC	5 cut(s)	80, 269, 397, 560, 571
MalI	GATC	4 cut(s)	195, 611, 627, 737
MboI	GATC	4 cut(s)	193, 609, 625, 735
MboII	GAAGA	3 cut(s)	405, 599, 884
MfeI	CAATTG	1 cut(s)	689
MhlI	GDGCHC	2 cut(s)	169, 185
MluCI	AATT	2 cut(s)	689, 929
MlyI	GAGTC	2 cut(s)	277, 405
MnlI	CCTC	4 cut(s)	172, 537, 583, 850
Mph1103I	ATGCAT	1 cut(s)	940
MseI	TTAA	3 cut(s)	60, 327, 926
MslI	CAYNNNNRTG	1 cut(s)	578
MspI	CCGG	2 cut(s)	252, 318
MspR9I	CCNGG	3 cut(s)	253, 390, 794
MunI	CAATTG	1 cut(s)	689
MvaI	CCWGG	2 cut(s)	390, 794
MwoI	GCNNNNNNNGC	4 cut(s)	71, 139, 292, 337
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	4 cut(s)	193, 609, 625, 735
NlaIII	CATG	4 cut(s)	250, 380, 916, 942
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	4 cut(s)	80, 269, 397, 571
NsiI	ATGCAT	1 cut(s)	940
NspI	RCATGY	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	614
PflFI	GACNNNGTC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	135, 288, 475
PleI	GAGTC	2 cut(s)	276, 404
PpsI	GAGTC	2 cut(s)	276, 404
Ppu21I	YACGTR	2 cut(s)	43, 368
Psp6I	CCWGG	2 cut(s)	388, 792
PspEI	GGTNACC	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	2 cut(s)	388, 792
PspN4I	GGNNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	138
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	5 cut(s)	34, 41, 244, 653, 675
RsaNI	GTAC	5 cut(s)	33, 40, 243, 652, 674
RseI	CAYNNNNRTG	1 cut(s)	578
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	60, 327, 926
SatI	GCNGC	3 cut(s)	134, 287, 474
Sau3AI	GATC	4 cut(s)	193, 609, 625, 735
SchI	GAGTC	2 cut(s)	277, 405
ScrFI	CCNGG	3 cut(s)	253, 390, 794
SduI	GDGCHC	2 cut(s)	169, 185
SfaNI	GCATC	2 cut(s)	129, 430
SfcI	CTRYAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	689, 929
SsiI	CCGC	1 cut(s)	494
SspMI	CTAG	3 cut(s)	71, 77, 728
StyD4I	CCNGG	3 cut(s)	251, 388, 792
StyI	CCWWGG	2 cut(s)	76, 530
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	4 cut(s)	45, 234, 370, 675
TaqI	TCGA	4 cut(s)	228, 357, 696, 855
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	689, 929
TatI	WGTACW	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	60, 327, 926
Tru9I	TTAA	3 cut(s)	60, 327, 926
TseFI	GTSAC	4 cut(s)	80, 269, 397, 571
TseI	GCWGC	3 cut(s)	133, 286, 473
Tsp45I	GTSAC	4 cut(s)	80, 269, 397, 571
TspDTI	ATGAA	4 cut(s)	600, 785, 843, 933
Tth111I	GACNNNGTC	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	176
XceI	RCATGY	1 cut(s)	380
XmaJI	CCTAGG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	3 cut(s)	71, 77, 728
Zsp2I	ATGCAT	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.