Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Forward (+)

7945683 .. 7948443

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAAGAGACTAATTTTGGCGAGAAAACGCGCGTTCTGGTAGTTGGTGGGACGGGATCATTGGGGAGGAGGATTGTAAGTGCGTGTTTGGCTGAGGGACACGAGACTTATGTTCTCCAGCGGCCGGAGATTGGAGTGGACATCGAGAAGGTGCAGCTACTTCTTTCTTTCAAAAGACTCGGCGCACATCTTGTGGAAGGCTCATTCTCCGATCACCAAAGCCTTGTCTCTGCCGTAAAGCAAGTCGACGTGGTTGTCTCCGCCATGTCCGGTGTCCACTTCCGCACCCACAACATCCCCGTTCAGCTCAAGCTCGTCGCAGCCATCAAAGAGGCCGGTAACGTCAAGCGTTTCTTACCATCAGAATTTGGAATGGATCCGTCACGTATGGGACATGCCATGCCACCAGGAAGTGAAACATTTGATCAAAAAATGGAAATACGAAATGCAATTAAGGCCGCCGGGATCTCCCACACATACCTCGTCGGTGCTTGTTTTGCCGCATACTTCGGCGGAAATTTATCTCAAATGGGAACTTTGTTCCCTCCGAAAAACAAAGTTGATATTTATGGGGACGGAAATGTTAAAGTGGTGTTCGTAGATGAAGATGACATGGCAAAATATACAGCGAAGACGCTTAATGATCCCCGAACGTTGAATAAAACTGTGTATGTTAGACCTACCGACAACATTCTCACACAAATGGAACTAGTTCAGATATGGGAGAAACTAACCGAAAAAGAGTTGGAGAAGACCTATGTTTCAGGAAACGACTTTCTTGCTGACATTGAAGATAAGGAGATATCACACCAAGCGGGACTAGGACACTTTTATCACATATACTACGAAGGTTGTCTCACAGATCATGAAGTTGGAGACGACGAAGAAGCTACTAAACTCTATCCGGATGTGAAGTACAAACGCATGGATGAATATTTGAAAATTTTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010283 GO:0016491 GO:0016627 GO:0016628 GO:0019438 GO:0019748 GO:0030054 GO:0044237 GO:0044249 GO:0044550 GO:0055044 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

317

Amino Acids

35.42

Weight (kDa)

5.79

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	9 - 313	1.2e-65	NmrA-like family
Epimerase	PF01370	12 - 118	2.3e-07	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	16 - 161	2.8e-11	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	2 cut(s)	31, 33
AccIII	TCCGGA	1 cut(s)	904
AciI	CCGC	7 cut(s)	121, 261, 283, 459, 501, 513, 815
AclI	AACGTT	1 cut(s)	653
AclWI	GGATC	5 cut(s)	64, 371, 384, 473, 638
AcoI	YGGCCR	1 cut(s)	122
AcsI	RAATTY	3 cut(s)	365, 517, 942
AfaI	GTAC	1 cut(s)	917
AfiI	CCNNNNNNNGG	2 cut(s)	124, 131
AgsI	TTSAA	4 cut(s)	172, 658, 791, 940
AhlI	ACTAGT	1 cut(s)	709
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	4 cut(s)	157, 307, 313, 890
AluI	AGCT	4 cut(s)	157, 307, 313, 890
Alw26I	GTCTC	6 cut(s)	2, 98, 232, 262, 860, 870
AlwI	GGATC	5 cut(s)	64, 371, 384, 473, 638
Aor13HI	TCCGGA	1 cut(s)	904
AoxI	GGCC	3 cut(s)	122, 333, 456
ApeKI	GCWGC	2 cut(s)	154, 320
ApoI	RAATTY	3 cut(s)	365, 517, 942
Asp700I	GAANNNNTTC	2 cut(s)	711, 944
AspLEI	GCGC	2 cut(s)	33, 185
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	376
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	2 cut(s)	638, 758
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	166, 332
BccI	CCATC	2 cut(s)	332, 367
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	6 cut(s)	2, 98, 232, 262, 860, 870
BcuI	ACTAGT	1 cut(s)	709
BfaI	CTAG	2 cut(s)	710, 821
BisI	GCNGC	5 cut(s)	122, 155, 321, 459, 501
BlsI	GCNGC	5 cut(s)	123, 156, 322, 460, 502
Bme1390I	CCNGG	2 cut(s)	408, 463
BmgBI	CACGTC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	408, 463
BpiI	GAAGAC	2 cut(s)	638, 758
BpmI	CTGGAG	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	463
BsaAI	YACGTR	1 cut(s)	386
BsaWI	WCCGGW	2 cut(s)	269, 904
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 131
Bse118I	RCCGGY	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	904
BseBI	CCWGG	1 cut(s)	408
BseGI	GGATG	3 cut(s)	294, 913, 934
BseLI	CCNNNNNNNGG	2 cut(s)	124, 131
BseMII	CTCAG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	82
BseX3I	CGGCCG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	166, 332
BsgI	GTGCAG	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	31, 33
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	3 cut(s)	124, 335, 458
BsiEI	CGRYCG	1 cut(s)	125
BsiSI	CCGG	5 cut(s)	125, 270, 336, 462, 905
BslFI	GGGAC	5 cut(s)	64, 111, 405, 587, 831
BslI	CCNNNNNNNGG	2 cut(s)	124, 131
BsmAI	GTCTC	6 cut(s)	2, 98, 232, 262, 860, 870
BsmBI	CGTCTC	1 cut(s)	870
BsmFI	GGGAC	5 cut(s)	64, 111, 405, 587, 831
BsnI	GGCC	3 cut(s)	124, 335, 458
Bsp13I	TCCGGA	1 cut(s)	904
Bsp143I	GATC	7 cut(s)	56, 211, 376, 424, 465, 643, 862
BspACI	CCGC	7 cut(s)	121, 261, 283, 459, 501, 513, 815
BspANI	GGCC	3 cut(s)	124, 335, 458
BspCNI	CTCAG	1 cut(s)	85
BspEI	TCCGGA	1 cut(s)	904
BspFNI	CGCG	2 cut(s)	31, 33
BspHI	TCATGA	1 cut(s)	865
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	5 cut(s)	64, 371, 384, 473, 638
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssMI	GATC	7 cut(s)	56, 211, 376, 424, 465, 643, 862
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	667
BstBAI	YACGTR	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	294, 913, 934
BstFNI	CGCG	2 cut(s)	31, 33
BstHHI	GCGC	2 cut(s)	33, 185
BstKTI	GATC	7 cut(s)	59, 214, 379, 427, 468, 646, 865
BstMAI	GTCTC	6 cut(s)	2, 98, 232, 262, 860, 870
BstMBI	GATC	7 cut(s)	56, 211, 376, 424, 465, 643, 862
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 455, 497
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	406, 461
BstUI	CGCG	2 cut(s)	31, 33
BstV1I	GCAGC	2 cut(s)	166, 332
BstV2I	GAAGAC	2 cut(s)	638, 758
BstX2I	RGATCY	2 cut(s)	376, 465
BstYI	RGATCY	2 cut(s)	376, 465
BstZI	CGGCCG	1 cut(s)	122
BsuRI	GGCC	3 cut(s)	124, 335, 458
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	294, 913, 934
CciI	TCATGA	1 cut(s)	865
CfoI	GCGC	2 cut(s)	33, 185
Cfr10I	RCCGGY	1 cut(s)	335
CseI	GACGC	1 cut(s)	643
Csp6I	GTAC	1 cut(s)	916
CviAII	CATG	6 cut(s)	265, 395, 400, 613, 866, 925
CviQI	GTAC	1 cut(s)	916
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	7 cut(s)	58, 213, 378, 426, 467, 645, 864
DpnII	GATC	7 cut(s)	56, 211, 376, 424, 465, 643, 862
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	122
EagI	CGGCCG	1 cut(s)	122
EciI	GGCGGA	2 cut(s)	250, 528
EclXI	CGGCCG	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	804
Eco52I	CGGCCG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	804
Esp3I	CGTCTC	1 cut(s)	870
FaeI	CATG	6 cut(s)	268, 398, 403, 616, 869, 928
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	5 cut(s)	64, 111, 405, 587, 831
FatI	CATG	6 cut(s)	264, 394, 399, 612, 865, 924
FauI	CCCGC	1 cut(s)	808
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	5 cut(s)	122, 155, 321, 459, 501
FokI	GGATG	3 cut(s)	281, 920, 941
Fsp4HI	GCNGC	5 cut(s)	122, 155, 321, 459, 501
FspBI	CTAG	2 cut(s)	710, 821
GlaI	GCGC	2 cut(s)	32, 184
GluI	GCNGC	5 cut(s)	122, 155, 321, 459, 501
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	124, 335, 458
HapII	CCGG	5 cut(s)	125, 270, 336, 462, 905
HgaI	GACGC	1 cut(s)	643
HhaI	GCGC	2 cut(s)	33, 185
Hin1II	CATG	6 cut(s)	268, 398, 403, 616, 869, 928
Hin6I	GCGC	2 cut(s)	31, 183
HinP1I	GCGC	2 cut(s)	31, 183
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	5 cut(s)	125, 270, 336, 462, 905
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	139, 247, 277
Hpy188I	TCNGA	4 cut(s)	211, 364, 549, 717
Hpy188III	TCNNGA	4 cut(s)	145, 765, 866, 905
Hpy8I	GTNNAC	3 cut(s)	139, 247, 277
Hpy99I	CGWCG	4 cut(s)	251, 320, 488, 884
HpyAV	CCTTC	3 cut(s)	142, 191, 842
HpyCH4III	ACNGT	1 cut(s)	667
HpyCH4IV	ACGT	4 cut(s)	249, 342, 385, 653
HpyCH4V	TGCA	2 cut(s)	154, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 455, 497
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	4 cut(s)	249, 342, 385, 653
Hsp92II	CATG	6 cut(s)	268, 398, 403, 616, 869, 928
HspAI	GCGC	2 cut(s)	31, 183
Kpn2I	TCCGGA	1 cut(s)	904
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	7 cut(s)	56, 211, 376, 424, 465, 643, 862
Lsp1109I	GCAGC	2 cut(s)	166, 332
MaeI	CTAG	2 cut(s)	710, 821
MaeII	ACGT	4 cut(s)	249, 342, 385, 653
MaeIII	GTNAC	2 cut(s)	338, 381
MalI	GATC	7 cut(s)	58, 213, 378, 426, 467, 645, 864
MboI	GATC	7 cut(s)	56, 211, 376, 424, 465, 643, 862
MboII	GAAGA	5 cut(s)	617, 643, 763, 803, 896
MflI	RGATCY	2 cut(s)	376, 465
MluCI	AATT	5 cut(s)	13, 365, 450, 517, 942
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	726, 853
MnlI	CCTC	6 cut(s)	60, 63, 88, 325, 491, 555
MroI	TCCGGA	1 cut(s)	904
MroXI	GAANNNNTTC	2 cut(s)	711, 944
MseI	TTAA	3 cut(s)	453, 585, 639
MslI	CAYNNNNRTG	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	5 cut(s)	125, 270, 336, 462, 905
MspR9I	CCNGG	2 cut(s)	408, 463
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	2 cut(s)	31, 33
MwoI	GCNNNNNNNGC	3 cut(s)	89, 455, 497
NciI	CCSGG	1 cut(s)	463
NdeII	GATC	7 cut(s)	56, 211, 376, 424, 465, 643, 862
NlaIII	CATG	6 cut(s)	268, 398, 403, 616, 869, 928
NlaIV	GGNNCC	1 cut(s)	378
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	381
NspI	RCATGY	1 cut(s)	398
PagI	TCATGA	1 cut(s)	865
PdmI	GAANNNNTTC	2 cut(s)	711, 944
PkrI	GCNGC	5 cut(s)	123, 156, 322, 460, 502
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Ppu21I	YACGTR	1 cut(s)	386
Psp1406I	AACGTT	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	376, 465
RsaI	GTAC	1 cut(s)	917
RsaNI	GTAC	1 cut(s)	916
RseI	CAYNNNNRTG	1 cut(s)	701
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	453, 585, 639
SatI	GCNGC	5 cut(s)	122, 155, 321, 459, 501
Sau3AI	GATC	7 cut(s)	56, 211, 376, 424, 465, 643, 862
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	408, 463
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SpeI	ACTAGT	1 cut(s)	709
Sse9I	AATT	5 cut(s)	13, 365, 450, 517, 942
SsiI	CCGC	7 cut(s)	121, 261, 283, 459, 501, 513, 815
SspI	AATATT	1 cut(s)	935
SspMI	CTAG	2 cut(s)	710, 821
StyD4I	CCNGG	2 cut(s)	406, 461
TaaI	ACNGT	1 cut(s)	667
TaiI	ACGT	4 cut(s)	252, 345, 388, 656
TaqI	TCGA	2 cut(s)	144, 246
TasI	AATT	5 cut(s)	13, 365, 450, 517, 942
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	3 cut(s)	124, 461, 503
Tru1I	TTAA	3 cut(s)	453, 585, 639
Tru9I	TTAA	3 cut(s)	453, 585, 639
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	2 cut(s)	154, 320
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	4 cut(s)	17, 618, 882, 945
TspGWI	ACGGA	2 cut(s)	369, 591
XapI	RAATTY	3 cut(s)	365, 517, 942
XceI	RCATGY	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	2 cut(s)	711, 944
XspI	CTAG	2 cut(s)	710, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.