Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Reverse (-)

15051207 .. 15053822

Gene Structure 2616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g23710.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCAAATGCAAAGAGCGACCTTAAGATTCTTGTGGTAGGGGGTACTGGGTATGTTGGGAGAAGGATTGTTAAGGCAAGCCTGGCACAAGGCTACCCGACTCATATCCTTCAAAGACCCGCGACGGAGATCGGTCTCGACATTGAGAAACTACAAATGCTCTTGTCGTTTAAGAAGCAAGGAGCTCATCTGGTGGAGGGTTCGTTTTCTGATATCCAAAGCCTTGTCAATGCCGTCAAACGGGTGGACGTTGTCATTTGCACCATGTCGGGTGTGCATTTCCGCAGCCACAATCTTTTGTTACAGCTCAAGCTTGTAGAAGCCATTAAACAAGCTGGAAATGTTAAGCGCTTCTTGCCATCGGAGTTTGGTTTGGATCCGGCGCGTATGGGACATGCACTTGAGCCAGGAAGAGTGACATTTGACGAGAAAATGGTGGTGAGGAAGGCAATAGAAGAGGCTAAAATCCCCTTCACTTATGTGTGTGGTGCTGCCTTCGGCGGTTATTTTGCTGGGAATCTGTCACAGATGGGAACACTGGTTCCTCCAAAGGACAAAGTCCTTATCTATGGAGATGGCAACACTAAAGTATCTTTGATGGACGAAGATGACATCGCAACCTATGCAATCAAGACAATAGATGATCCGCGAACTTTGAACAAAACATTGTACCTTCTTCCCCCCGAAAACCTACTCACGCAAAGACAGTTGGTGCAGATTTGGGAAAATCTCGTTGGAAAGAAACTAGAGAAAATGTCCATTTCTAAAGATGACTTCCTTGTCTCTATGAAAGGTATGGATTATGCAGGCCAGGTCGGAGTGGGACATTTCTATCATATTTTCTATGAAGGCTCTTTGACAAACTTCAAAATTGGGGAGGAAGGAGAAGAAGCTTCGAAGCTTTACCCAGAAGTGAAATACACCCGCATGGATGAATACTTGAAAGTTTATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

319

Amino Acids

35.4

Weight (kDa)

8.28

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	9 - 179	1.9e-41	NmrA-like family
Epimerase	PF01370	10 - 119	3.8e-09	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	14 - 162	2.7e-11	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	779
AccII	CGCG	3 cut(s)	122, 385, 649
AciI	CCGC	5 cut(s)	120, 283, 501, 647, 925
AclWI	GGATC	3 cut(s)	371, 384, 638
AfaI	GTAC	2 cut(s)	46, 671
AfeI	AGCGCT	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	113, 658, 868, 943
AjnI	CCWGG	3 cut(s)	81, 406, 810
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AleI	CACNNNNGTG	1 cut(s)	479
AloI	GAACNNNNNNTCC	4 cut(s)	525, 526, 557, 558
AluBI	AGCT	6 cut(s)	185, 307, 313, 335, 893, 901
AluI	AGCT	6 cut(s)	185, 307, 313, 335, 893, 901
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	2 cut(s)	140, 787
AlwI	GGATC	3 cut(s)	371, 384, 638
Aor51HI	AGCGCT	1 cut(s)	350
AoxI	GGCC	1 cut(s)	808
ApeKI	GCWGC	2 cut(s)	285, 491
AspLEI	GCGC	2 cut(s)	351, 385
AsuHPI	GGTGA	1 cut(s)	451
AsuII	TTCGAA	1 cut(s)	896
BaeI	ACNNNNGTAYC	2 cut(s)	573, 606
BamHI	GGATCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	297, 478
BccI	CCATC	4 cut(s)	367, 523, 569, 592
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	3 cut(s)	83, 408, 812
BcoDI	GTCTC	2 cut(s)	140, 787
BfaI	CTAG	1 cut(s)	746
BfoI	RGCGCY	1 cut(s)	352
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	2 cut(s)	286, 492
BlsI	GCNGC	2 cut(s)	287, 493
Bme1390I	CCNGG	3 cut(s)	83, 408, 812
BmiI	GGNNCC	2 cut(s)	378, 543
BmrFI	CCNGG	3 cut(s)	83, 408, 812
BmrI	ACTGGG	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	57
Bpu14I	TTCGAA	1 cut(s)	896
BpuEI	CTTGAG	2 cut(s)	293, 422
BsaI	GGTCTC	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	52, 543
BseBI	CCWGG	3 cut(s)	83, 408, 812
BseGI	GGATG	1 cut(s)	937
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	52, 543
BseXI	GCAGC	2 cut(s)	297, 478
BseYI	CCCAGC	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	734
Bsh1236I	CGCG	3 cut(s)	122, 385, 649
BshFI	GGCC	1 cut(s)	810
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	405, 837
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	140, 787
BsmFI	GGGAC	2 cut(s)	405, 837
BsnI	GGCC	1 cut(s)	810
Bso31I	GGTCTC	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	896
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	129, 376, 643
BspACI	CCGC	5 cut(s)	120, 283, 501, 647, 925
BspANI	GGCC	1 cut(s)	810
BspFNI	CGCG	3 cut(s)	122, 385, 649
BspLI	GGNNCC	2 cut(s)	378, 543
BspPI	GGATC	3 cut(s)	371, 384, 638
BspT104I	TTCGAA	1 cut(s)	896
BspTI	CTTAAG	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	52, 543
BssMI	GATC	3 cut(s)	129, 376, 643
Bst2UI	CCWGG	3 cut(s)	83, 408, 812
Bst4CI	ACNGT	1 cut(s)	708
Bst6I	CTCTTC	2 cut(s)	406, 450
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstBI	TTCGAA	1 cut(s)	896
BstC8I	GCNNGC	2 cut(s)	79, 808
BstF5I	GGATG	1 cut(s)	937
BstFNI	CGCG	3 cut(s)	122, 385, 649
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	2 cut(s)	351, 385
BstKTI	GATC	3 cut(s)	132, 379, 646
BstMAI	GTCTC	2 cut(s)	140, 787
BstMBI	GATC	3 cut(s)	129, 376, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 355, 623
BstNI	CCWGG	3 cut(s)	83, 408, 812
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	3 cut(s)	81, 406, 810
BstUI	CGCG	3 cut(s)	122, 385, 649
BstV1I	GCAGC	2 cut(s)	297, 478
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	810
BtgZI	GCGATG	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	937
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	79, 808
CfoI	GCGC	2 cut(s)	351, 385
Csp6I	GTAC	2 cut(s)	45, 670
CviAII	CATG	4 cut(s)	265, 395, 928, 954
CviQI	GTAC	2 cut(s)	45, 670
DpnI	GATC	3 cut(s)	131, 378, 645
DpnII	GATC	3 cut(s)	129, 376, 643
DrdI	GACNNNNNNGTC	1 cut(s)	779
DseDI	GACNNNNNNGTC	1 cut(s)	779
Eam1104I	CTCTTC	2 cut(s)	406, 450
EarI	CTCTTC	2 cut(s)	406, 450
Ecl136II	GAGCTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	214
Eco47III	AGCGCT	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	185
EcoRII	CCWGG	3 cut(s)	81, 406, 810
EcoRV	GATATC	1 cut(s)	214
EcoT22I	ATGCAT	1 cut(s)	955
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	4 cut(s)	268, 398, 931, 957
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	2 cut(s)	405, 837
FatI	CATG	4 cut(s)	264, 394, 927, 953
FauI	CCCGC	2 cut(s)	127, 932
Fnu4HI	GCNGC	2 cut(s)	286, 492
FokI	GGATG	1 cut(s)	944
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	286, 492
FspBI	CTAG	1 cut(s)	746
GlaI	GCGC	2 cut(s)	350, 384
GluI	GCNGC	2 cut(s)	286, 492
GsaI	CCCAGC	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	810
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	2 cut(s)	351, 385
Hin1II	CATG	4 cut(s)	268, 398, 931, 957
Hin6I	GCGC	2 cut(s)	349, 383
HinP1I	GCGC	2 cut(s)	349, 383
HindIII	AAGCTT	3 cut(s)	311, 891, 899
HinfI	GANTC	3 cut(s)	28, 100, 517
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	3 cut(s)	211, 364, 818
Hpy188III	TCNNGA	2 cut(s)	137, 631
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	8 cut(s)	57, 119, 439, 481, 505, 683, 842, 875
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	8 cut(s)	11, 261, 277, 398, 626, 715, 806, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 355, 623
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	268, 398, 931, 957
HspAI	GCGC	2 cut(s)	349, 383
Kzo9I	GATC	3 cut(s)	129, 376, 643
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	2 cut(s)	297, 478
MaeI	CTAG	1 cut(s)	746
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	3 cut(s)	300, 415, 522
MalI	GATC	3 cut(s)	131, 378, 645
MboI	GATC	3 cut(s)	129, 376, 643
MboII	GAAGA	5 cut(s)	423, 467, 617, 668, 899
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	1 cut(s)	870
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	2 cut(s)	715, 796
MnlI	CCTC	5 cut(s)	190, 435, 451, 555, 871
Mph1103I	ATGCAT	1 cut(s)	955
MseI	TTAA	5 cut(s)	24, 72, 171, 327, 345
MslI	CAYNNNNRTG	2 cut(s)	479, 926
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	3 cut(s)	83, 408, 812
MvaI	CCWGG	3 cut(s)	83, 408, 812
MvnI	CGCG	3 cut(s)	122, 385, 649
MwoI	GCNNNNNNNGC	3 cut(s)	83, 355, 623
NdeII	GATC	3 cut(s)	129, 376, 643
NlaIII	CATG	4 cut(s)	268, 398, 931, 957
NlaIV	GGNNCC	2 cut(s)	378, 543
NmuCI	GTSAC	2 cut(s)	415, 522
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	896
OliI	CACNNNNGTG	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	28, 517
PflFI	GACNNNGTC	2 cut(s)	251, 557
PkrI	GCNGC	2 cut(s)	287, 493
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	187
Psp6I	CCWGG	3 cut(s)	81, 406, 810
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	3 cut(s)	81, 406, 810
PspN4I	GGNNCC	2 cut(s)	378, 543
PsuI	RGATCY	1 cut(s)	376
PsyI	GACNNNGTC	2 cut(s)	251, 557
RsaI	GTAC	2 cut(s)	46, 671
RsaNI	GTAC	2 cut(s)	45, 670
RseI	CAYNNNNRTG	2 cut(s)	479, 926
SacI	GAGCTC	1 cut(s)	187
SaqAI	TTAA	5 cut(s)	24, 72, 171, 327, 345
SatI	GCNGC	2 cut(s)	286, 492
Sau3AI	GATC	3 cut(s)	129, 376, 643
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	83, 408, 812
SduI	GDGCHC	1 cut(s)	187
SfuI	TTCGAA	1 cut(s)	896
SmiMI	CAYNNNNRTG	2 cut(s)	479, 926
SmlI	CTYRAG	3 cut(s)	23, 308, 401
SmoI	CTYRAG	3 cut(s)	23, 308, 401
Sse9I	AATT	1 cut(s)	870
SsiI	CCGC	5 cut(s)	120, 283, 501, 647, 925
SspMI	CTAG	1 cut(s)	746
SstI	GAGCTC	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	81, 406, 810
TaaI	ACNGT	1 cut(s)	708
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	138, 896
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	870
TfiI	GAWTC	2 cut(s)	28, 517
Tru1I	TTAA	5 cut(s)	24, 72, 171, 327, 345
Tru9I	TTAA	5 cut(s)	24, 72, 171, 327, 345
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	415, 522
TseI	GCWGC	2 cut(s)	285, 491
Tsp45I	GTSAC	2 cut(s)	415, 522
TspDTI	ATGAA	3 cut(s)	803, 861, 948
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	543
Tth111I	GACNNNGTC	2 cut(s)	251, 557
Vha464I	CTTAAG	1 cut(s)	23
XceI	RCATGY	1 cut(s)	398
XspI	CTAG	1 cut(s)	746
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.