Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Forward (+)

2602007 .. 2605453

Gene Structure 3447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G023200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAAAAGAGCAAGGTGCTTGTGGTTGGTGGTACTGGGTACCTGGGGCGTAGGATTGTTTCTGCAAGCCTATCCCAAGGCCACCCAACGTATGTTCTTCAAAGGCCAGAGATTGGCCTTGACATTGATAAGCTCCAAATGCTCTTGGCATTCAAGAAGCAAGGGGCTCACCTTGTGGAGGGCTCATTTTCTGATCTGGAAAGCCTTGTCCGTGCTGTCAAGCTTGTTGATGTTGTCATCTGCCCCATATCTGGGGTACATATTCGGAGTCACAACATTTTGCTGCAGCTCCAACTTGTTGAAGCTATCAAAAGAGCCGGAAATATTAAGCGTTTTTTACCTTCAGAGTTTGGTCTAGATCCACCACGTATGGGACATGCACTTGAACCTGGAAGAGTTACATTTGATGATAAAATGGTAGTGAGAAAGGCAATACAAGATGCTAAAATCCCCTTCACTTATGTATGTGGTGCCGGCGTCGCTGGTTATTTCGCTGGCAACCTTTCACAGATGGGGACACTCATTCCTCCAAAGGAGAAAGTTCTTATTTATGGAGATGGTAACGCGAAAGTATCTATAGTGGATGAAGATAACATCGCAGCATATACAATCAAAACAATAGATGATCCGCGAACATTGAACAAAACATTATACCTTCGTCCACCCGAAAACGAACTCAGTCAAAAACAATTGGTCGAGATGTGGGAGAACCTCATAGGCAAGAAACTAGAACATATCTCCATTTCAGAAGAAGACTTCCTTGCCTCTATGAAAGGTATGGACTATGCAGGCCAGGTAGGAGCGGGGCATTTCTACCACATGTTCTATGAAGGCGTTCTGACAAACTTTGAAATCGGGGAAGAAGGAGAAGAAGCTTCAAAGCTTTACCCAGAAGTGAAATACACTCGCATGAATGAATACTTAAAAATTTATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

313

Amino Acids

34.78

Weight (kDa)

6.27

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	39, 470
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccBSI	CCGCTC	1 cut(s)	803
AccII	CGCG	2 cut(s)	566, 631
AciI	CCGC	2 cut(s)	629, 803
AclWI	GGATC	2 cut(s)	353, 620
AcsI	RAATTY	1 cut(s)	927
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	477
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	3 cut(s)	34, 41, 258
AfiI	CCNNNNNNNGG	5 cut(s)	113, 178, 251, 252, 371
AflIII	ACRYGT	1 cut(s)	819
AgsI	TTSAA	7 cut(s)	101, 154, 302, 386, 640, 851, 879
AjnI	CCWGG	3 cut(s)	42, 388, 792
AluBI	AGCT	6 cut(s)	133, 223, 289, 305, 875, 883
AluI	AGCT	6 cut(s)	133, 223, 289, 305, 875, 883
AlwI	GGATC	2 cut(s)	353, 620
AoxI	GGCC	4 cut(s)	79, 104, 115, 790
ApeKI	GCWGC	3 cut(s)	283, 286, 599
ApoI	RAATTY	1 cut(s)	927
Asp700I	GAANNNNTTC	1 cut(s)	834
Asp718I	GGTACC	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	161
BanI	GGYRCC	2 cut(s)	39, 470
BanII	GRGCYC	2 cut(s)	169, 185
BbsI	GAAGAC	1 cut(s)	759
BbvI	GCAGC	3 cut(s)	270, 298, 611
BccI	CCATC	2 cut(s)	505, 551
BciT130I	CCWGG	3 cut(s)	44, 390, 794
BfaI	CTAG	2 cut(s)	356, 728
BfmI	CTRYAG	2 cut(s)	284, 576
BisI	GCNGC	3 cut(s)	284, 287, 600
BlsI	GCNGC	3 cut(s)	285, 288, 601
Bme1390I	CCNGG	3 cut(s)	44, 390, 794
BmiI	GGNNCC	2 cut(s)	41, 472
BmrFI	CCNGG	3 cut(s)	44, 390, 794
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	759
BsaAI	YACGTR	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	43, 76
Bsc4I	CCNNNNNNNGG	5 cut(s)	113, 178, 251, 252, 371
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	3 cut(s)	44, 390, 794
BseDI	CCNNGG	2 cut(s)	43, 76
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	5 cut(s)	113, 178, 251, 252, 371
BseMII	CTCAG	1 cut(s)	691
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	270, 298, 611
Bsh1236I	CGCG	2 cut(s)	566, 631
BshFI	GGCC	4 cut(s)	81, 106, 117, 792
BshNI	GGYRCC	2 cut(s)	39, 470
BsiSI	CCGG	2 cut(s)	318, 474
BslFI	GGGAC	2 cut(s)	387, 529
BslI	CCNNNNNNNGG	5 cut(s)	113, 178, 251, 252, 371
BsmFI	GGGAC	2 cut(s)	387, 529
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	4 cut(s)	81, 106, 117, 792
Bsp1286I	GDGCHC	2 cut(s)	169, 185
Bsp143I	GATC	3 cut(s)	193, 358, 625
BspACI	CCGC	2 cut(s)	629, 803
BspANI	GGCC	4 cut(s)	81, 106, 117, 792
BspCNI	CTCAG	1 cut(s)	690
BspFNI	CGCG	2 cut(s)	566, 631
BspLI	GGNNCC	2 cut(s)	41, 472
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	2 cut(s)	353, 620
BspT107I	GGYRCC	2 cut(s)	39, 470
BsrBI	CCGCTC	1 cut(s)	803
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	2 cut(s)	43, 76
BssMI	GATC	3 cut(s)	193, 358, 625
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	3 cut(s)	44, 390, 794
Bst6I	CTCTTC	1 cut(s)	388
BstACI	GRCGYC	1 cut(s)	477
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	4 cut(s)	67, 475, 496, 790
BstDEI	CTNAG	1 cut(s)	677
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	2 cut(s)	566, 631
BstKTI	GATC	3 cut(s)	196, 361, 628
BstMBI	GATC	3 cut(s)	193, 358, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 479
BstNI	CCWGG	3 cut(s)	44, 390, 794
BstNSI	RCATGY	2 cut(s)	380, 823
BstSCI	CCNGG	3 cut(s)	42, 388, 792
BstSFI	CTRYAG	2 cut(s)	284, 576
BstUI	CGCG	2 cut(s)	566, 631
BstV1I	GCAGC	3 cut(s)	270, 298, 611
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	4 cut(s)	81, 106, 117, 792
BtgZI	GCGATG	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	589
Cac8I	GCNNGC	4 cut(s)	67, 475, 496, 790
Cfr10I	RCCGGY	1 cut(s)	473
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	3 cut(s)	33, 40, 257
CviAII	CATG	3 cut(s)	377, 820, 910
CviQI	GTAC	3 cut(s)	33, 40, 257
DdeI	CTNAG	1 cut(s)	677
DpnI	GATC	3 cut(s)	195, 360, 627
DpnII	GATC	3 cut(s)	193, 358, 625
DraIII	CACNNNGTG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	169, 185
Eco57I	CTGAAG	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoRII	CCWGG	3 cut(s)	42, 388, 792
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	169, 185
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	3 cut(s)	380, 823, 913
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FaqI	GGGAC	2 cut(s)	387, 529
FatI	CATG	3 cut(s)	376, 819, 909
FauI	CCCGC	1 cut(s)	796
Fnu4HI	GCNGC	3 cut(s)	284, 287, 600
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	2 cut(s)	169, 185
Fsp4HI	GCNGC	3 cut(s)	284, 287, 600
FspBI	CTAG	2 cut(s)	356, 728
GluI	GCNGC	3 cut(s)	284, 287, 600
HaeIII	GGCC	4 cut(s)	81, 106, 117, 792
HapII	CCGG	2 cut(s)	318, 474
HgaI	GACGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	3 cut(s)	380, 823, 913
HindIII	AAGCTT	3 cut(s)	221, 873, 881
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	2 cut(s)	318, 474
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	5 cut(s)	193, 267, 346, 748, 840
Hpy188III	TCNNGA	4 cut(s)	154, 197, 356, 697
Hpy8I	GTNNAC	1 cut(s)	662
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	5 cut(s)	351, 463, 665, 824, 857
HpyCH4IV	ACGT	2 cut(s)	89, 367
HpyCH4V	TGCA	4 cut(s)	65, 286, 380, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 479
HpyF3I	CTNAG	1 cut(s)	677
HpySE526I	ACGT	2 cut(s)	89, 367
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	3 cut(s)	380, 823, 913
KpnI	GGTACC	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	473
KroNI	GCCGGC	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	193, 358, 625
LmnI	GCTCC	3 cut(s)	138, 294, 800
Lsp1109I	GCAGC	3 cut(s)	270, 298, 611
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	356, 728
MaeII	ACGT	2 cut(s)	89, 367
MaeIII	GTNAC	3 cut(s)	269, 397, 560
MalI	GATC	3 cut(s)	195, 360, 627
MbiI	CCGCTC	1 cut(s)	803
MboI	GATC	3 cut(s)	193, 358, 625
MboII	GAAGA	7 cut(s)	89, 405, 599, 761, 764, 872, 881
MfeI	CAATTG	1 cut(s)	689
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	169, 185
MluCI	AATT	2 cut(s)	689, 927
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	4 cut(s)	172, 537, 722, 775
MroNI	GCCGGC	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	834
MseI	TTAA	2 cut(s)	327, 923
MslI	CAYNNNNRTG	1 cut(s)	908
MspI	CCGG	2 cut(s)	318, 474
MspR9I	CCNGG	3 cut(s)	44, 390, 794
MunI	CAATTG	1 cut(s)	689
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	3 cut(s)	44, 390, 794
MvnI	CGCG	2 cut(s)	566, 631
MwoI	GCNNNNNNNGC	2 cut(s)	139, 479
NaeI	GCCGGC	1 cut(s)	475
NdeII	GATC	3 cut(s)	193, 358, 625
NgoMIV	GCCGGC	1 cut(s)	473
NlaIII	CATG	3 cut(s)	380, 823, 913
NlaIV	GGNNCC	2 cut(s)	41, 472
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	2 cut(s)	380, 823
PciI	ACATGT	1 cut(s)	819
PctI	GAATGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	834
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	285, 288, 601
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Ppu21I	YACGTR	1 cut(s)	368
PscI	ACATGT	1 cut(s)	819
Psp6I	CCWGG	3 cut(s)	42, 388, 792
PspGI	CCWGG	3 cut(s)	42, 388, 792
PspN4I	GGNNCC	2 cut(s)	41, 472
PstI	CTGCAG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	3 cut(s)	34, 41, 258
RsaNI	GTAC	3 cut(s)	33, 40, 257
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	2 cut(s)	327, 923
SatI	GCNGC	3 cut(s)	284, 287, 600
Sau3AI	GATC	3 cut(s)	193, 358, 625
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	44, 390, 794
SduI	GDGCHC	2 cut(s)	169, 185
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	2 cut(s)	284, 576
SmiMI	CAYNNNNRTG	1 cut(s)	908
Sse9I	AATT	2 cut(s)	689, 927
SsiI	CCGC	2 cut(s)	629, 803
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	2 cut(s)	356, 728
StyD4I	CCNGG	3 cut(s)	42, 388, 792
StyI	CCWWGG	1 cut(s)	76
TaiI	ACGT	2 cut(s)	92, 370
TaqI	TCGA	1 cut(s)	696
TasI	AATT	2 cut(s)	689, 927
Tru1I	TTAA	2 cut(s)	327, 923
Tru9I	TTAA	2 cut(s)	327, 923
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	283, 286, 599
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	5 cut(s)	600, 785, 843, 926, 930
TspGWI	ACGGA	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	927
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	2 cut(s)	380, 823
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	2 cut(s)	356, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.