Rorug07G0138700

Isoflavone reductase homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
10930921 .. 10931346
426 bp
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UTR
Exon/CDS
Intron
Rorug07G0138700.1

Sequence Viewer

Length: 426 bp
ATGGCCCGTCATATACCCCATTCTTCTTCTGCATTACATGTTGAGGCTGAATCTGTTAGAGCTGGGCTGCTTTTAGCCATACGTGAGGGATGGTCCGAGGTTGAACTGGAGACTGACAGTGCTAGTCTAGCTTCTGCACTAGCCACTTCTATTGCGGACTTCTCTGAAATTGGTAGGATTGTGGATGATTCTAAGGAGTACATGGATGCTTTTTCTTTCATTTCGGTTCGCCATATTTATCGTGAAGCAAATAGTGTTGCTCATCATTTAGCACACTTTGCTAGTTATTCTTATTATGATGATATTTGGATTGGAGAGACACCCTCTATTATTGAGGATGTTCTCTTGGAAGATGATTGTACTCGTACACGGGGTTTAGGCACCACGTCCCCCTCGTTGTACAATGCTTTGAATAATAACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

15.59

Weight (kDa)

4.69

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 4 - 94 3.4e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 1 cut(s) 155
AfaI GTAC 4 cut(s) 200, 361, 367, 401
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 2 cut(s) 104, 412
AjiI CACGTC 1 cut(s) 387
AluBI AGCT 2 cut(s) 62, 131
AluI AGCT 2 cut(s) 62, 131
Alw26I GTCTC 2 cut(s) 104, 311
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 4, 93
AvaII GGWCC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 84
BcoDI GTCTC 2 cut(s) 104, 311
BfaI CTAG 4 cut(s) 123, 128, 140, 282
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 93
BmgBI CACGTC 1 cut(s) 387
BmgT120I GGNCC 2 cut(s) 4, 93
BmiI GGNNCC 1 cut(s) 382
BmsI GCATC 1 cut(s) 196
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 4 cut(s) 95, 190, 211, 343
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 54
BseYI CCCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 380
BslFI GGGAC 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 104, 311
BsmFI GGGAC 1 cut(s) 373
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 399
BspACI CCGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 119
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 4 cut(s) 95, 190, 211, 343
BstMAI GTCTC 2 cut(s) 104, 311
BstMWI GCNNNNNNNGC 2 cut(s) 128, 278
BstNSI RCATGY 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 387
BtsCI GGATG 4 cut(s) 95, 190, 211, 343
BtsIMutI CAGTG 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 4, 93
Csp6I GTAC 4 cut(s) 199, 360, 366, 400
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 2 cut(s) 38, 202
CviJI RGCY 7 cut(s) 5, 47, 62, 67, 77, 131, 143
CviKI_1 RGCY 7 cut(s) 5, 47, 62, 67, 77, 131, 143
CviQI GTAC 4 cut(s) 199, 360, 366, 400
DdeI CTNAG 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 93
FaeI CATG 2 cut(s) 41, 205
FaiI YATR 7 cut(s) 12, 14, 39, 80, 203, 234, 297
FaqI GGGAC 1 cut(s) 373
FatI CATG 2 cut(s) 37, 201
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 4 cut(s) 102, 197, 218, 350
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 4 cut(s) 123, 128, 140, 282
GluI GCNGC 1 cut(s) 68
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 41, 205
HinfI GANTC 2 cut(s) 50, 188
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 2 cut(s) 97, 166
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 2 cut(s) 82, 386
HpyCH4V TGCA 2 cut(s) 32, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 278
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 2 cut(s) 82, 386
Hsp92II CATG 2 cut(s) 41, 205
LpnPI CCDG 2 cut(s) 48, 92
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 196
MaeI CTAG 4 cut(s) 123, 128, 140, 282
MaeII ACGT 2 cut(s) 82, 386
MboII GAAGA 3 cut(s) 15, 18, 362
MluCI AATT 1 cut(s) 168
MnlI CCTC 6 cut(s) 37, 79, 91, 328, 334, 403
MwoI GCNNNNNNNGC 2 cut(s) 128, 278
NlaIII CATG 2 cut(s) 41, 205
NlaIV GGNNCC 1 cut(s) 382
NspI RCATGY 1 cut(s) 41
PciI ACATGT 1 cut(s) 37
PcsI WCGNNNNNNNCGW 1 cut(s) 392
PfeI GAWTC 2 cut(s) 50, 188
PkrI GCNGC 1 cut(s) 69
Ppu21I YACGTR 1 cut(s) 83
PscI ACATGT 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 2 cut(s) 4, 93
RsaI GTAC 4 cut(s) 200, 361, 367, 401
RsaNI GTAC 4 cut(s) 199, 360, 366, 400
SatI GCNGC 1 cut(s) 68
Sau96I GGNCC 2 cut(s) 4, 93
SetI ASST 5 cut(s) 64, 85, 102, 133, 389
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 93
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 155
SspMI CTAG 4 cut(s) 123, 128, 140, 282
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 2 cut(s) 85, 389
TasI AATT 1 cut(s) 168
TatI WGTACW 3 cut(s) 198, 359, 399
TfiI GAWTC 2 cut(s) 50, 188
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 208
TspRI CASTG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 93
XceI RCATGY 1 cut(s) 41
XspI CTAG 4 cut(s) 123, 128, 140, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.