Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

12109561 .. 12118861

Gene Structure 9301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4503 bp

ATGGAGGAGAATCGTCGGAATCCGTCGGCCGGTATGGAAGTTCCAGTTGCCGGCGGCGGAAATGTCGTCAAATGGATTGAGATATCTGTTCCTTCACCTTCTGTTTCATCTTCTAGTATCGGTGCTAATTCAAGTGAGGACAATGAGTGTGTTCAGCTTCCTTTGTCTGAAGACTACGCTTCTAGCTCTGTAATTGGGGAACCTTCGATCTCTTTCGTTTGGAGAATCAACAAGACGAGTCCAAATGCTCTCGAGCTTCTTCAGCTCTCAGCTAAGTCTGGATTTCCAATAACAGGACTGCGTTTCGTCTTTGCTCAGACTCTTTCTCCTTTTGCTTTTGTATACGCCGATGAGGGTGGTGATAGTGGTCGTCTTGTCTACTTTCTTTACTCTCTCACGCCGTCTGGTGTTGTCTACGTTCTTAAACTCTCGAATACGTTAGCATATAAGTCTGGTTCAGTCTTCCCGCTTGATCATTTGATTCACTTGGATGTTCGACCTTACTTGAACGAGAGTCGTGTTACTAGTGTTGCTGCATCGCCTGGTTTCATTTTTCTCGGGAGGTCCGATGGTTGTGTCTCTTGCTTCCAACCTATTGTGTATTTTCAGAAATCTTCAGGTTTCCACCAGGAGCTGCGTGATGATACAGGATTTGGTCGTCTGTGGGGATTCGTAAGGGGGACAGTTGTTGCAGCCGTGCAAGATTTATTTATATCAGAAGTTCATGGAAGAAATTATCTATGTGTGCTTCATGCTGACGGGGCATTACGTGTCTGGGATATTTTGACTTATAGCAGGGTTTTATGTCAGAGTATAGCTGCTAAGAACCTTGAGGGGGTTATGTGTGTGAGGTTATGGTTGGGCAAAGCTGATTACGATTCTGGCATCATTCCATTAGCTGTCTTGTATAGAAAGAGTATGAATGACAGCATGGACGTGATCACTGTATATGGCCTGCACTTTAGTTCTGCGGAGGGGATAGCTTTGTCTCTAGATTCTGGATTACAGAATATACCACTGGAAGAGGGGGAATTGCGGGATGTCAGATTTACATCCGACAAGATCTGGACTCTAAAGGCCAATGAATTAACATCTTACATGTTGTGCCAGAAATCTAGCACCATGGAAGCGCAGTCTTACACGTTGCAGGAAGACTACATTTCTGAACAGCTATTTCTGAGTTCTAGGAGCTCTTCACATGATCTTCTTTTGACTACTCATTCACTGTTTTCATCCGCAAAGGATCAAATTATGGGATTCATTTCGTCAATCTTCTTACGCAGGCTTCTTTGTCCTGGAATTTTTCACAATGTTGCCTTACGTCTAACTTTACTGGACCACAACAAAAACTGGACTGATTCCGAGTTTCAATCTTTAAGTCTTGATGAGCTTACAAGCGAGATTCTTTTACTGGTTGAGCATGAGGTTACAGCTGAAACTTCTATTTCAGTTTTTCATTGGTGGAAAAACTTTTGTACATCCTATCTCCATCATTGGTGCAGTAATAATGAACCTCGCACGTTGTTGGTTCAGTCAGATGTTATTGGTTTAGTTAGAAATAATTCTGTATCACTGTTTTTTAGATTGGAGAACGCTGAGCACAGCCTTGGAGGTTCTTCCTCCGAACACAGCAACCTGACGAGCTTAGACTTGGGCGTGTCTCACAGCGACCATGAAATTCTGGCAGAGGTACTAAGATGTACTTCGAAGATCAGTAAACAGTGGGGTGGTGCTCCTTATGCCATGTATTATGAATCAATTACCGGAAGGCCAATTATCTCATCGGATGAAATCGTTCCTCGCTTAGTTAACATCCTTGAGTCGGGATATTCTACGACCATAGGTCAACGTACTTGGTCAGATCTTGGTGCTGATAGAGCATGGGAAAAAGAGCTAGAAGCTCATAAAAATCTTAGAACATTCTCCATTGACATGCTGCTGTCTCTCTCTGCTCTATGTCAAAGGGCTGGATCTTGGGAAAAAGTCTTTACTATCATGGAGCACTATTTGCAGTATTTGGTCCCTAAAAAATCTATGCAGAAAAATGATGGTGAGGCATTATCTGATATCTGTAGTTCTATCCTCGTCCAAGCCACTTCTCAGTTTGTAAAGGTGATGTTTGAGTCGGCATTTGACATCTTCCTACTCATCAGCTATCTGCTTAACATCGCTGGGCAGGTTAATATGTCACAGCAAGACATATGCAAGCTACGGCTTGAGTTGCTTCCAATGATCCAAGATATTGTCTCAGAGTGGCTCATCATCCTTTTCTTTGTTACCACTCCAGCTGAGTCAACTTCTATGGAAGATTTCAGCTTGAAACTTTCATCTCTACAGATTGATAGCAGCATTGACAAAAGATCATGGAACGCAATGCTAGGGAAATGTGGTTTCTCACTGGCGTTTATTCTTCTCTTTAGTGACCGAAGTTGCATTGTGGATGGCCGCTTTAACTTGAGATATCTTCCGAGTTCACAAATCATTACAAGTTTGGTGCAAAACTTTATCAGCTGGATTCGGTATAGTAAAACAGGAGATGACTCTTCTTCACTGCTAAGACGCTCCACGGAACTTAGTCTTAGGTTGATTCGGAATGGACAATCTGATGCTGTTGAGCGAATCCTTGTGGTTGTGGAGGCAAGTTTACGTGGGGAGAAAACATTTGGATGTTCTCAAGATACTAGTGGAGATTGGTGTCTTCTTCAACATCTCCGTGGTTGTTGCCTTCTTGATCAAGTACAACGTGGTGCAAGTGGCATATTAAGAGAGAGAAAGATTATTGATGCCATCCGCTGCTTCTTCAGAGCTTCATCAGGTGAAGGATCTTGGAAGGCTTTGCACAGCTTGTCTAAAGAAGCAGGATTTTCACCTGCCACAACGGGTCCAAGTATTTTAGATGGTTCTACGTCTTCTGCAGCATGGAAACTTCATTACTATGAGTGGGCTATGCAAATTTTTGAACGGTACAATATAAGTGAAGGAGCTTGTCAGTTTGCCTATGCAGCCCTTGAGCAAGTAGATGATGCCTATAATTTCATAGAGATGACTGAGGAATTCGATCCAACTAAAGCAGCCACCTACACTAGAGGACGACTGTGGGCAAATGTTTTCAAGTTCACCTTAGATCTCAATCTCTTGAATGATGCCTACTGTGCTATAATTTCAAACCCTGATGAGGAGATTAAGCGCATCTGTTTGAGGCGCTTCATAATAGTTCTATTTGAATGTGGCAAAACGAAGATCCTCAGTGATGGACATCTACCTTTCATCGGCTTAACAGAGAAGATCACCCAAGAGCTTTTTTGGAAGGCCGGACGTTCTGATATAATGATGAAGCCAAATCCATACAAGCTGCTTTATGCTTATGAGATGAGACGACACAATTGGCGAATGGCGGCAAGTTACATGTATCAGTTTTCTGCCCGTTTGAGAAGCGAGGGAGCATGCAAGGATTACAAACACATGTCCCTAGTTTTGCAAGAGAGGCTTAATGGACTTTCTGCTGCTATGAATGCATTAGCCCTTGTTCATCCTGGGTATGCTTGGATTGATCCAGTACCAGAAGAAACCACACGTTATCCGGTTAAAAAGGCTAGAAGAGCAGAAGAAGAACAATTAAGGAGTAATGACCAGCCCAAAGGGGAGAAGAGTTGCATTGATATCGAGAAACTCCAAAACGAGTTTGTTTTTACTACTGCTGAATATATGCTTTCTCTGAAAAATTTCGGGTGGACATATTCAGGACTCGAAAAGCCACCATCAGATTTGGTTGACCTTCTTGTCCAGGCAAACTTGTATGACATGGCATTCACTGTTGTTTTGAAATTTTGGAGGGGCTCCGCTTTGAAAAGGGAGCTGGAAAAGATATTTGAGAATATGGCAATTAAATGTTGCCCTGCTAAAGGAACTCTGTGGTCATCGCCTAATCTTATGTTAACATCTAACGATGAAGAAGTTACTCATTCGCCTGATAGAAGCCCTGCTGATCAGGGCTCTAAGTTGGCTGGTGATTGGGAAATTCTTGAGGTTTATCTGAAGAGGTACATAGACATACACGCTAGACTACCGGTTTCTGTTGCTTCAACCCTTCTTCAAGCAGATTCTTGTATCGAATTGCCTCTCTGGCTGATTCAAATGTTCAAGGATGGTCAGAAGGAAAAAGCTTTGGGAATGGCTGGGCAAGAAGCAAGTCCTGCTTCCTTGTTTCAGTTATATGTTGATTATGGGCGTCTTACAGAGGCAACTAATTTGCTACTTGAGTACATGGAATCATTTGCTTCATCGAAACCAGCAGAGGTATTGAAGAGGAAAAAGGTATCCGGAGTTTGGTTTCCGTACACAACAGTAGAAAGACTATGGTGGGAGCTAGAGAAAACAATGAACTCAGGACGAATGGTGGAGCAATGCCATAAGCTGAAGGAACAACTTCATCATGCATTACTCAATCACTTAAAACTGCTTAAGGTGGACTCAAATGATGCTGTATCCTCTGCAACCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

1500

Amino Acids

168.92

Weight (kDa)

5.75

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	71 - 533	3.7e-43	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	552 - 741	1.6e-92	NUP160, helical domain
HEAT_Nup120	PF23300	921 - 1075	2e-11	Nucleoporin Nup120, HEAT repeats
TPR_NUP160_120_M	PF23354	968 - 1175	1.1e-32	NUP160/120 middle TPR
TPR_Nup160_C	PF23347	1222 - 1478	2.1e-14	Nup160 C-terminal TPR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2878
AasI	GACNNNNNNGTC	1 cut(s)	3779
Acc36I	ACCTGC	2 cut(s)	2167, 2878
AccI	GTMKAC	3 cut(s)	342, 378, 414
AccIII	TCCGGA	1 cut(s)	4319
AclWI	GGATC	7 cut(s)	1251, 1978, 2227, 2830, 3053, 3235, 3545
AcoI	YGGCCR	2 cut(s)	27, 2443
AcsI	RAATTY	7 cut(s)	1299, 1677, 2952, 3053, 3721, 3824, 4017
AcuI	CTGAAG	6 cut(s)	189, 245, 600, 2785, 4055, 4436
AcyI	GRCGYC	1 cut(s)	4228
AfiI	CCNNNNNNNGG	9 cut(s)	29, 50, 293, 835, 1822, 3175, 3269, 3902, 4326
AflII	CTTAAG	1 cut(s)	4460
AflIII	ACRYGT	6 cut(s)	769, 1098, 1140, 3405, 3462, 3572
AgeI	ACCGGT	2 cut(s)	4066, 4496
AhdI	GACNNNNNGTC	1 cut(s)	1842
AhlI	ACTAGT	2 cut(s)	524, 2681
AjiI	CACGTC	1 cut(s)	937
AjnI	CCWGG	5 cut(s)	541, 627, 1294, 3532, 3783
Alw21I	GWGCWC	4 cut(s)	1193, 1602, 1735, 2004
Alw26I	GTCTC	6 cut(s)	583, 993, 1665, 1947, 2251, 3367
AlwI	GGATC	7 cut(s)	1251, 1978, 2227, 2830, 3053, 3235, 3545
AlwNI	CAGNNNCTG	1 cut(s)	634
Ama87I	CYCGRG	2 cut(s)	251, 557
Aor13HI	TCCGGA	1 cut(s)	4319
AoxI	GGCC	6 cut(s)	27, 952, 1077, 1769, 2443, 3309
ApoI	RAATTY	7 cut(s)	1299, 1677, 2952, 3053, 3721, 3824, 4017
AsiGI	ACCGGT	2 cut(s)	4066, 4496
Asp700I	GAANNNNTTC	4 cut(s)	1561, 1794, 3722, 4425
AspLEI	GCGC	3 cut(s)	1132, 3189, 3204
AspS9I	GGNCC	4 cut(s)	564, 1336, 2020, 2882
AsuHPI	GGTGA	9 cut(s)	87, 371, 2063, 2125, 2828, 2859, 3109, 3280, 4019
AsuII	TTCGAA	1 cut(s)	1706
AvaI	CYCGRG	2 cut(s)	251, 557
AvaII	GGWCC	4 cut(s)	564, 1336, 2020, 2882
BanII	GRGCYC	3 cut(s)	1193, 3839, 3995
BbsI	GAAGAC	5 cut(s)	177, 454, 1158, 2690, 2901
Bbv12I	GWGCWC	4 cut(s)	1193, 1602, 1735, 2004
BccI	CCATC	9 cut(s)	563, 1497, 2042, 2435, 2795, 2891, 3245, 3766, 4139
BceAI	ACGGC	3 cut(s)	385, 680, 2228
BcgI	CGANNNNNNTGC	2 cut(s)	3643, 3677
BciT130I	CCWGG	5 cut(s)	543, 629, 1296, 3534, 3785
BciVI	GTATCC	2 cut(s)	4327, 4495
BclI	TGATCA	4 cut(s)	472, 939, 2731, 3985
BcoDI	GTCTC	6 cut(s)	583, 993, 1665, 1947, 2251, 3367
BcuI	ACTAGT	2 cut(s)	524, 2681
BfmI	CTRYAG	3 cut(s)	2071, 2333, 2913
BfoI	RGCGCY	1 cut(s)	3205
BfrI	CTTAAG	1 cut(s)	4460
BfuAI	ACCTGC	2 cut(s)	2167, 2878
BfuI	GTATCC	2 cut(s)	4327, 4495
BglI	GCCNNNNNGGC	1 cut(s)	4123
BglII	AGATCT	3 cut(s)	1062, 1861, 3124
BlpI	GCTNAGC	1 cut(s)	1596
Bme1390I	CCNGG	5 cut(s)	543, 629, 1296, 3534, 3785
Bme18I	GGWCC	4 cut(s)	564, 1336, 2020, 2882
BmeRI	GACNNNNNGTC	1 cut(s)	1842
BmeT110I	CYCGRG	2 cut(s)	251, 557
BmgBI	CACGTC	1 cut(s)	937
BmgT120I	GGNCC	4 cut(s)	564, 1336, 2020, 2882
BmiI	GGNNCC	4 cut(s)	201, 2022, 2883, 3838
BmrFI	CCNGG	5 cut(s)	543, 629, 1296, 3534, 3785
BmsI	GCATC	8 cut(s)	545, 894, 2596, 2773, 3013, 3133, 3198, 4468
BpiI	GAAGAC	5 cut(s)	177, 454, 1158, 2690, 2901
BpmI	CTGGAG	1 cut(s)	2268
Bpu1102I	GCTNAGC	1 cut(s)	1596
Bpu14I	TTCGAA	1 cut(s)	1706
BpuEI	CTTGAG	8 cut(s)	851, 1838, 2237, 2476, 2658, 3029, 4043, 4277
BsaAI	YACGTR	2 cut(s)	770, 2648
BsaBI	GATNNNNATC	3 cut(s)	1051, 3129, 3255
BsaHI	GRCGYC	1 cut(s)	4228
BsaJI	CCNNGG	5 cut(s)	1122, 1606, 2565, 2713, 3533
BsaWI	WCCGGW	5 cut(s)	1763, 3580, 4066, 4319, 4496
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	9 cut(s)	29, 50, 293, 835, 1822, 3175, 3269, 3902, 4326
Bse118I	RCCGGY	4 cut(s)	29, 50, 4066, 4496
Bse1I	ACTGG	7 cut(s)	44, 1023, 1338, 1355, 1416, 2403, 3554
Bse3DI	GCAATG	2 cut(s)	2379, 4409
Bse8I	GATNNNNATC	3 cut(s)	1051, 3129, 3255
BseAI	TCCGGA	1 cut(s)	4319
BseBI	CCWGG	5 cut(s)	543, 629, 1296, 3534, 3785
BseDI	CCNNGG	5 cut(s)	1122, 1606, 2565, 2713, 3533
BseJI	GATNNNNATC	3 cut(s)	1051, 3129, 3255
BseLI	CCNNNNNNNGG	9 cut(s)	29, 50, 293, 835, 1822, 3175, 3269, 3902, 4326
BseMI	GCAATG	2 cut(s)	2379, 4409
BseNI	ACTGG	7 cut(s)	44, 1023, 1338, 1355, 1416, 2403, 3554
BseRI	GAGGAG	2 cut(s)	20, 3191
BseX3I	CGGCCG	1 cut(s)	27
BseYI	CCCAGC	2 cut(s)	2171, 4175
BsgI	GTGCAG	2 cut(s)	941, 1519
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	6 cut(s)	29, 954, 1079, 1771, 2445, 3311
BshTI	ACCGGT	2 cut(s)	4066, 4496
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	4 cut(s)	1193, 1602, 1735, 2004
BsiHKCI	CYCGRG	2 cut(s)	251, 557
BsiSI	CCGG	8 cut(s)	30, 51, 1764, 3312, 3581, 4067, 4320, 4497
BslFI	GGGAC	3 cut(s)	694, 2006, 3451
BslI	CCNNNNNNNGG	9 cut(s)	29, 50, 293, 835, 1822, 3175, 3269, 3902, 4326
BsmAI	GTCTC	6 cut(s)	583, 993, 1665, 1947, 2251, 3367
BsmBI	CGTCTC	1 cut(s)	3367
BsmFI	GGGAC	3 cut(s)	694, 2006, 3451
BsmI	GAATGC	2 cut(s)	3517, 3806
BsnI	GGCC	6 cut(s)	29, 954, 1079, 1771, 2445, 3311
BsoBI	CYCGRG	2 cut(s)	251, 557
Bsp119I	TTCGAA	1 cut(s)	1706
Bsp1286I	GDGCHC	6 cut(s)	1193, 1602, 1735, 2004, 3839, 3995
Bsp13I	TCCGGA	1 cut(s)	4319
Bsp1407I	TGTACA	1 cut(s)	1475
Bsp1720I	GCTNAGC	1 cut(s)	1596
Bsp19I	CCATGG	1 cut(s)	1122
BspANI	GGCC	6 cut(s)	29, 954, 1079, 1771, 2445, 3311
BspEI	TCCGGA	1 cut(s)	4319
BspLI	GGNNCC	4 cut(s)	201, 2022, 2883, 3838
BspMAI	CTGCAG	1 cut(s)	2917
BspMI	ACCTGC	2 cut(s)	2167, 2878
BspPI	GGATC	7 cut(s)	1251, 1978, 2227, 2830, 3053, 3235, 3545
BspQI	GCTCTTC	2 cut(s)	1198, 3592
BspT104I	TTCGAA	1 cut(s)	1706
BspTI	CTTAAG	1 cut(s)	4460
BsrDI	GCAATG	2 cut(s)	2379, 4409
BsrFI	RCCGGY	4 cut(s)	29, 50, 4066, 4496
BsrGI	TGTACA	1 cut(s)	1475
BsrI	ACTGG	7 cut(s)	44, 1023, 1338, 1355, 1416, 2403, 3554
BssAI	RCCGGY	4 cut(s)	29, 50, 4066, 4496
BssECI	CCNNGG	5 cut(s)	1122, 1606, 2565, 2713, 3533
BssNAI	GTATAC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	4228
BssT1I	CCWWGG	2 cut(s)	1122, 1606
Bst1107I	GTATAC	1 cut(s)	343
Bst2UI	CCWGG	5 cut(s)	543, 629, 1296, 3534, 3785
Bst6I	CTCTTC	7 cut(s)	1017, 1198, 2548, 3592, 3641, 4031, 4298
BstACI	GRCGYC	1 cut(s)	4228
BstAFI	CTTAAG	1 cut(s)	4460
BstAPI	GCANNNNNTGC	2 cut(s)	2008, 4193
BstAUI	TGTACA	1 cut(s)	1475
BstBAI	YACGTR	2 cut(s)	770, 2648
BstBI	TTCGAA	1 cut(s)	1706
BstC8I	GCNNGC	5 cut(s)	52, 956, 1283, 2207, 3445
BstDSI	CCRYGG	3 cut(s)	1122, 2565, 2713
BstENI	CCTNNNNNAGG	1 cut(s)	3900
BstH2I	RGCGCY	1 cut(s)	3205
BstHHI	GCGC	3 cut(s)	1132, 3189, 3204
BstMAI	GTCTC	6 cut(s)	583, 993, 1665, 1947, 2251, 3367
BstMCI	CGRYCG	1 cut(s)	30
BstNI	CCWGG	5 cut(s)	543, 629, 1296, 3534, 3785
BstNSI	RCATGY	5 cut(s)	1102, 1936, 3409, 3447, 3466
BstSCI	CCNGG	5 cut(s)	541, 627, 1294, 3532, 3783
BstSFI	CTRYAG	3 cut(s)	2071, 2333, 2913
BstV2I	GAAGAC	5 cut(s)	177, 454, 1158, 2690, 2901
BstX2I	RGATCY	6 cut(s)	1062, 1861, 1970, 2822, 3124, 3240
BstYI	RGATCY	6 cut(s)	1062, 1861, 1970, 2822, 3124, 3240
BstZ17I	GTATAC	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	27
BsuI	GTATCC	2 cut(s)	4327, 4495
BsuRI	GGCC	6 cut(s)	29, 954, 1079, 1771, 2445, 3311
BtgI	CCRYGG	3 cut(s)	1122, 2565, 2713
BtgZI	GCGATG	3 cut(s)	522, 2152, 3903
BtrI	CACGTC	1 cut(s)	937
BtsI	GCAGTG	1 cut(s)	2549
BtsIMutI	CAGTG	9 cut(s)	942, 1016, 1223, 1571, 1727, 2396, 2549, 3253, 3810
BveI	ACCTGC	2 cut(s)	2167, 2878
Cac8I	GCNNGC	5 cut(s)	52, 956, 1283, 2207, 3445
CaiI	CAGNNNCTG	1 cut(s)	634
CfoI	GCGC	3 cut(s)	1132, 3189, 3204
Cfr10I	RCCGGY	4 cut(s)	29, 50, 4066, 4496
Cfr13I	GGNCC	4 cut(s)	564, 1336, 2020, 2882
CseI	GACGC	2 cut(s)	2568, 4217
CspAI	ACCGGT	2 cut(s)	4066, 4496
DrdI	GACNNNNNNGTC	1 cut(s)	3779
DriI	GACNNNNNGTC	1 cut(s)	1842
DseDI	GACNNNNNNGTC	1 cut(s)	3779
EaeI	YGGCCR	2 cut(s)	27, 2443
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	7 cut(s)	1017, 1198, 2548, 3592, 3641, 4031, 4298
Eam1105I	GACNNNNNGTC	1 cut(s)	1842
EarI	CTCTTC	7 cut(s)	1017, 1198, 2548, 3592, 3641, 4031, 4298
EciI	GGCGGA	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	1191
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	1122, 1606
Eco24I	GRGCYC	3 cut(s)	1193, 3839, 3995
Eco32I	GATATC	4 cut(s)	84, 2068, 2462, 3661
Eco47I	GGWCC	4 cut(s)	564, 1336, 2020, 2882
Eco52I	CGGCCG	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	1191
Eco57I	CTGAAG	6 cut(s)	189, 245, 600, 2785, 4055, 4436
Eco88I	CYCGRG	2 cut(s)	251, 557
EcoICRI	GAGCTC	1 cut(s)	1191
EcoNI	CCTNNNNNAGG	1 cut(s)	3900
EcoRI	GAATTC	1 cut(s)	3053
EcoRII	CCWGG	5 cut(s)	541, 627, 1294, 3532, 3783
EcoRV	GATATC	4 cut(s)	84, 2068, 2462, 3661
EcoT14I	CCWWGG	2 cut(s)	1122, 1606
EcoT22I	ATGCAT	2 cut(s)	3517, 4438
EcoT38I	GRGCYC	3 cut(s)	1193, 3839, 3995
ErhI	CCWWGG	2 cut(s)	1122, 1606
Esp3I	CGTCTC	1 cut(s)	3367
FalI	AAGNNNNNCTT	8 cut(s)	1687, 1719, 3104, 3136, 3471, 3503, 4180, 4212
FaqI	GGGAC	3 cut(s)	694, 2006, 3451
FauI	CCCGC	2 cut(s)	474, 1029
FauNDI	CATATG	1 cut(s)	2201
FbaI	TGATCA	4 cut(s)	472, 939, 2731, 3985
FblI	GTMKAC	3 cut(s)	342, 378, 414
FriOI	GRGCYC	3 cut(s)	1193, 3839, 3995
GlaI	GCGC	3 cut(s)	1131, 3188, 3203
GsaI	CCCAGC	2 cut(s)	2175, 4179
GsuI	CTGGAG	1 cut(s)	2268
HaeII	RGCGCY	1 cut(s)	3205
HaeIII	GGCC	6 cut(s)	29, 954, 1079, 1771, 2445, 3311
HapII	CCGG	8 cut(s)	30, 51, 1764, 3312, 3581, 4067, 4320, 4497
HgaI	GACGC	2 cut(s)	2568, 4217
HhaI	GCGC	3 cut(s)	1132, 3189, 3204
Hin1I	GRCGYC	1 cut(s)	4228
Hin6I	GCGC	3 cut(s)	1130, 3187, 3202
HinP1I	GCGC	3 cut(s)	1130, 3187, 3202
HincII	GTYRAC	5 cut(s)	1810, 1847, 2295, 3772, 3936
HindII	GTYRAC	5 cut(s)	1810, 1847, 2295, 3772, 3936
HindIII	AAGCTT	1 cut(s)	4161
HpaI	GTTAAC	2 cut(s)	1810, 3936
HpaII	CCGG	8 cut(s)	30, 51, 1764, 3312, 3581, 4067, 4320, 4497
HphI	GGTGA	9 cut(s)	87, 371, 2063, 2125, 2828, 2859, 3109, 3280, 4019
Hpy99I	CGWCG	2 cut(s)	18, 28
Hsp92I	GRCGYC	1 cut(s)	4228
HspAI	GCGC	3 cut(s)	1130, 3187, 3202
Kpn2I	TCCGGA	1 cut(s)	4319
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	4 cut(s)	472, 939, 2731, 3985
KspAI	GTTAAC	2 cut(s)	1810, 3936
LguI	GCTCTTC	2 cut(s)	1198, 3592
LweI	GCATC	8 cut(s)	545, 894, 2596, 2773, 3013, 3133, 3198, 4468
MaeIII	GTNAC	7 cut(s)	520, 1426, 2187, 2275, 2420, 3401, 3955
MfeI	CAATTG	1 cut(s)	3382
MflI	RGATCY	6 cut(s)	1062, 1861, 1970, 2822, 3124, 3240
MhlI	GDGCHC	6 cut(s)	1193, 1602, 1735, 2004, 3839, 3995
MmeI	TCCRAC	3 cut(s)	613, 1080, 3086
Mph1103I	ATGCAT	2 cut(s)	3517, 4438
MroI	TCCGGA	1 cut(s)	4319
MroNI	GCCGGC	1 cut(s)	50
MroXI	GAANNNNTTC	4 cut(s)	1561, 1794, 3722, 4425
MslI	CAYNNNNRTG	7 cut(s)	489, 935, 1931, 2665, 2712, 2934, 3041
MspA1I	CMGCKG	4 cut(s)	1433, 2288, 2511, 2793
MspCI	CTTAAG	1 cut(s)	4460
MspI	CCGG	8 cut(s)	30, 51, 1764, 3312, 3581, 4067, 4320, 4497
MspR9I	CCNGG	5 cut(s)	543, 629, 1296, 3534, 3785
MunI	CAATTG	1 cut(s)	3382
Mva1269I	GAATGC	2 cut(s)	3517, 3806
MvaI	CCWGG	5 cut(s)	543, 629, 1296, 3534, 3785
NaeI	GCCGGC	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	1122
NdeI	CATATG	1 cut(s)	2201
NgoMIV	GCCGGC	1 cut(s)	50
NlaIV	GGNNCC	4 cut(s)	201, 2022, 2883, 3838
NmuCI	GTSAC	2 cut(s)	2187, 2420
NsiI	ATGCAT	2 cut(s)	3517, 4438
NspI	RCATGY	5 cut(s)	1102, 1936, 3409, 3447, 3466
NspV	TTCGAA	1 cut(s)	1706
PaeI	GCATGC	1 cut(s)	3447
PaeR7I	CTCGAG	1 cut(s)	251
PaqCI	CACCTGC	1 cut(s)	2878
PciI	ACATGT	3 cut(s)	1098, 3405, 3462
PciSI	GCTCTTC	2 cut(s)	1198, 3592
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PctI	GAATGC	2 cut(s)	3517, 3806
PdiI	GCCGGC	1 cut(s)	52
PdmI	GAANNNNTTC	4 cut(s)	1561, 1794, 3722, 4425
PfoI	TCCNGGA	1 cut(s)	1294
PinAI	ACCGGT	2 cut(s)	4066, 4496
Ppu21I	YACGTR	2 cut(s)	770, 2648
PscI	ACATGT	3 cut(s)	1098, 3405, 3462
Psp124BI	GAGCTC	1 cut(s)	1193
Psp6I	CCWGG	5 cut(s)	541, 627, 1294, 3532, 3783
PspFI	CCCAGC	2 cut(s)	2171, 4175
PspGI	CCWGG	5 cut(s)	541, 627, 1294, 3532, 3783
PspN4I	GGNNCC	4 cut(s)	201, 2022, 2883, 3838
PspPI	GGNCC	4 cut(s)	564, 1336, 2020, 2882
PstI	CTGCAG	1 cut(s)	2917
PstNI	CAGNNNCTG	1 cut(s)	634
PsuI	RGATCY	6 cut(s)	1062, 1861, 1970, 2822, 3124, 3240
PvuII	CAGCTG	3 cut(s)	1433, 2288, 2511
RseI	CAYNNNNRTG	7 cut(s)	489, 935, 1931, 2665, 2712, 2934, 3041
SacI	GAGCTC	1 cut(s)	1193
SapI	GCTCTTC	2 cut(s)	1198, 3592
Sau96I	GGNCC	4 cut(s)	564, 1336, 2020, 2882
ScrFI	CCNGG	5 cut(s)	543, 629, 1296, 3534, 3785
SduI	GDGCHC	6 cut(s)	1193, 1602, 1735, 2004, 3839, 3995
SfaNI	GCATC	8 cut(s)	545, 894, 2596, 2773, 3013, 3133, 3198, 4468
SfcI	CTRYAG	3 cut(s)	2071, 2333, 2913
Sfr274I	CTCGAG	1 cut(s)	251
SfuI	TTCGAA	1 cut(s)	1706
SinI	GGWCC	4 cut(s)	564, 1336, 2020, 2882
SlaI	CTCGAG	1 cut(s)	251
SmiMI	CAYNNNNRTG	7 cut(s)	489, 935, 1931, 2665, 2712, 2934, 3041
SpeI	ACTAGT	2 cut(s)	524, 2681
SphI	GCATGC	1 cut(s)	3447
SstI	GAGCTC	1 cut(s)	1193
StyD4I	CCNGG	5 cut(s)	541, 627, 1294, 3532, 3783
StyI	CCWWGG	2 cut(s)	1122, 1606
TaqII	GACCGA	1 cut(s)	2439
TatI	WGTACW	4 cut(s)	1475, 1700, 2737, 4260
TauI	GCSGC	3 cut(s)	57, 2448, 3398
TscAI	CASTG	9 cut(s)	949, 1023, 1230, 1578, 1727, 2403, 2556, 3253, 3817
TseFI	GTSAC	2 cut(s)	2187, 2420
Tsp45I	GTSAC	2 cut(s)	2187, 2420
TspGWI	ACGGA	4 cut(s)	12, 2582, 2702, 4323
TspRI	CASTG	9 cut(s)	949, 1023, 1230, 1578, 1727, 2403, 2556, 3253, 3817
Vha464I	CTTAAG	1 cut(s)	4460
VpaK11BI	GGWCC	4 cut(s)	564, 1336, 2020, 2882
XagI	CCTNNNNNAGG	1 cut(s)	3900
XapI	RAATTY	7 cut(s)	1299, 1677, 2952, 3053, 3721, 3824, 4017
XbaI	TCTAGA	1 cut(s)	991
XceI	RCATGY	5 cut(s)	1102, 1936, 3409, 3447, 3466
XhoI	CTCGAG	1 cut(s)	251
XmiI	GTMKAC	3 cut(s)	342, 378, 414
XmnI	GAANNNNTTC	4 cut(s)	1561, 1794, 3722, 4425
Zsp2I	ATGCAT	2 cut(s)	3517, 4438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.