Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Forward (+)

25090841 .. 25092947

Gene Structure 2107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1160000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTGAAGAAGGAAATTCTTTCCCTGATTGAACATGAGGGTGTTAGTGATAATTCAACGTCAATATTGTGCTGTTGGAAAAAATTCTGTTCTCCCTACTTCCAAAATTGGTGCAAGAGCAATGCACTACGTGGCTTGCTTTTGGATTCCTACAGGGGTAGTTTTGGATTGATCAGAAAGAACTCAGTATCTCTTTTTCGTTGTTCGGAGAATATTGAGCGGCTTATTAATGGTATCTCAGGTACTTCTGATGATCTCATCCATCTTGTTACCATGGAGGCGGGTTTAATTCTTCAATTAGAGGTGCTCGTTAAAATGCTTAGATGTGTTGTTAATGTCAGCCAACAATTGGGAAAAACAGCTTCTGCTATATTTTATGAATCATTAGTTAGTGCACCACTCGTTATCTCAGCTGAGGAAATTACTCATCTTTTGAAGAATTTAGAATCTGGATATGGTTCAACGGTAGCAATGCTTCATGTATCAGAGCATGGACCTGATGTTGCTTTGGAGAGAAACCTGGCTGATAAAAAAAAATTGAGGAAAATTTCTATTGGCATGCTGTTATCTCTTCATGCCTTGCACATGAATCGTACTGTTATTTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

204

Amino Acids

22.58

Weight (kDa)

8.52

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	2 - 73	4.4e-10	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	99 - 196	9.7e-34	NUP160, helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	220
AciI	CCGC	2 cut(s)	220, 281
AcsI	RAATTY	4 cut(s)	15, 83, 439, 546
AdeI	CACNNNGTG	1 cut(s)	131
AfaI	GTAC	2 cut(s)	244, 595
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	6 cut(s)	7, 32, 57, 296, 436, 462
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	2 cut(s)	362, 413
AluI	AGCT	2 cut(s)	362, 413
Alw21I	GWGCWC	2 cut(s)	309, 397
Alw44I	GTGCAC	1 cut(s)	393
AlwNI	CAGNNNCTG	1 cut(s)	365
ApaLI	GTGCAC	1 cut(s)	393
ApoI	RAATTY	4 cut(s)	15, 83, 439, 546
AseI	ATTAAT	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	397
BarI	GAAGNNNNNNTAC	2 cut(s)	459, 491
Bbv12I	GWGCWC	2 cut(s)	309, 397
BbvCI	CCTCAGC	1 cut(s)	414
BccI	CCATC	1 cut(s)	270
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciT130I	CCWGG	1 cut(s)	521
BclI	TGATCA	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	521
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	521
Bpu10I	CCTNAGC	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse3DI	GCAATG	2 cut(s)	127, 477
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	2 cut(s)	127, 477
BseMII	CTCAG	4 cut(s)	198, 252, 405, 423
BseSI	GKGCMC	1 cut(s)	397
BsiHKAI	GWGCWC	2 cut(s)	309, 397
BslI	CCNNNNNNNGG	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	309, 397
Bsp143I	GATC	2 cut(s)	171, 253
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	2 cut(s)	220, 281
BspCNI	CTCAG	4 cut(s)	197, 251, 406, 422
BsrBI	CCGCTC	1 cut(s)	220
BsrDI	GCAATG	2 cut(s)	127, 477
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	171, 253
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	466, 598
Bst6I	CTCTTC	1 cut(s)	576
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	137, 560
BstDEI	CTNAG	5 cut(s)	184, 238, 320, 409, 414
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	174, 256
BstMBI	GATC	2 cut(s)	171, 253
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	137, 560
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	2 cut(s)	243, 594
CviAII	CATG	7 cut(s)	35, 274, 479, 491, 559, 575, 586
CviJI	RGCY	6 cut(s)	135, 223, 342, 362, 413, 524
CviKI_1	RGCY	6 cut(s)	135, 223, 342, 362, 413, 524
CviQI	GTAC	2 cut(s)	243, 594
DdeI	CTNAG	5 cut(s)	184, 238, 320, 409, 414
DpnI	GATC	2 cut(s)	173, 255
DpnII	GATC	2 cut(s)	171, 253
DraIII	CACNNNGTG	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	7 cut(s)	38, 277, 482, 494, 562, 578, 589
FatI	CATG	7 cut(s)	34, 273, 478, 490, 558, 574, 585
FauI	CCCGC	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
Hin1II	CATG	7 cut(s)	38, 277, 482, 494, 562, 578, 589
HinfI	GANTC	4 cut(s)	146, 380, 446, 589
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	4 cut(s)	176, 208, 250, 487
Hpy188III	TCNNGA	1 cut(s)	450
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	2 cut(s)	466, 598
HpyCH4IV	ACGT	2 cut(s)	59, 130
HpyCH4V	TGCA	4 cut(s)	114, 125, 395, 583
HpyF3I	CTNAG	5 cut(s)	184, 238, 320, 409, 414
HpySE526I	ACGT	2 cut(s)	59, 130
Hsp92II	CATG	7 cut(s)	38, 277, 482, 494, 562, 578, 589
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	171, 253
LpnPI	CCDG	7 cut(s)	38, 139, 225, 435, 506, 510, 533
MaeII	ACGT	2 cut(s)	59, 130
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	173, 255
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	2 cut(s)	171, 253
MboII	GAAGA	4 cut(s)	19, 284, 448, 563
MfeI	CAATTG	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	309, 397
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	5 cut(s)	31, 271, 295, 409, 534
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	4 cut(s)	228, 287, 312, 333
MslI	CAYNNNNRTG	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	521
MunI	CAATTG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	521
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	2 cut(s)	171, 253
NlaIII	CATG	7 cut(s)	38, 277, 482, 494, 562, 578, 589
NspI	RCATGY	1 cut(s)	562
PaeI	GCATGC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	4 cut(s)	146, 380, 446, 589
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	222
Ppu21I	YACGTR	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	494
PstNI	CAGNNNCTG	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	244, 595
RsaNI	GTAC	2 cut(s)	243, 594
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	4 cut(s)	228, 287, 312, 333
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	2 cut(s)	171, 253
Sau96I	GGNCC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	2 cut(s)	309, 397
SetI	ASST	8 cut(s)	62, 133, 244, 306, 364, 415, 499, 522
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	39
SphI	GCATGC	1 cut(s)	562
SsiI	CCGC	2 cut(s)	220, 281
SspI	AATATT	2 cut(s)	66, 214
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	466, 598
TaiI	ACGT	2 cut(s)	62, 133
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	4 cut(s)	146, 380, 446, 589
Tru1I	TTAA	4 cut(s)	228, 287, 312, 333
Tru9I	TTAA	4 cut(s)	228, 287, 312, 333
TspDTI	ATGAA	4 cut(s)	393, 467, 563, 602
Van91I	CCANNNNNTGG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	494
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	4 cut(s)	15, 83, 439, 546
XceI	RCATGY	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.