Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

34455340 .. 34456266

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1280900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGGCGGGTTTAATTCTTCAATTAGAGGTGCTCGTTAAAATGCTTAGATGTGTTGTTAATGTCAGCCAACAATTGGGAAAAACAGCTTCTGCTATATTTTATGAATCATTAGTTAGTGCACCACTCGTTATCTCAGCTGAGGAAATTACTCATCGCCTTTTGAAGAATTTAGAATCTGGATATGGTTCAACGGTAGCAATGCTTCATGTATCAGAGCATGGACCTGATGTTGCTTTGGAGAGAAACCTGGCTGATAAAAAAAAATTGAGGAAATTTTCTATTGGCATGCTGTTATCTCTTCATGCCTTGCACATGAATCGTACTGTTATTTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

114

Amino Acids

12.47

Weight (kDa)

8.85

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUP160_helical_2	PF17238	8 - 106	6.5e-37	NUP160, helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AciI	CCGC	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	169, 275
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	23, 166, 192
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	89, 140
AluI	AGCT	2 cut(s)	89, 140
Alw21I	GWGCWC	2 cut(s)	36, 124
Alw44I	GTGCAC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	92
ApaLI	GTGCAC	1 cut(s)	120
ApoI	RAATTY	2 cut(s)	169, 275
AspS9I	GGNCC	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	124
BarI	GAAGNNNNNNTAC	2 cut(s)	189, 221
Bbv12I	GWGCWC	2 cut(s)	36, 124
BbvCI	CCTCAGC	1 cut(s)	141
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	132, 150
BseSI	GKGCMC	1 cut(s)	124
BsiHKAI	GWGCWC	2 cut(s)	36, 124
BslI	CCNNNNNNNGG	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	36, 124
BspACI	CCGC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	133, 149
BsrDI	GCAATG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	196, 328
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	47, 136, 141
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	124
BtgZI	GCGATG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	290
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	5 cut(s)	209, 221, 289, 305, 316
CviJI	RGCY	4 cut(s)	69, 89, 140, 254
CviKI_1	RGCY	4 cut(s)	69, 89, 140, 254
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	3 cut(s)	47, 136, 141
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	212, 224, 292, 308, 319
FaiI	YATR	8 cut(s)	98, 105, 186, 210, 222, 290, 306, 317
FatI	CATG	5 cut(s)	208, 220, 288, 304, 315
Hin1II	CATG	5 cut(s)	212, 224, 292, 308, 319
HinfI	GANTC	3 cut(s)	107, 176, 319
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	180
Hpy8I	GTNNAC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	196, 328
HpyCH4V	TGCA	2 cut(s)	122, 313
HpyF3I	CTNAG	3 cut(s)	47, 136, 141
Hsp92II	CATG	5 cut(s)	212, 224, 292, 308, 319
LpnPI	CCDG	4 cut(s)	165, 236, 240, 263
MboII	GAAGA	3 cut(s)	11, 178, 293
MfeI	CAATTG	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	36, 124
MluCI	AATT	7 cut(s)	15, 23, 74, 147, 169, 266, 275
MnlI	CCTC	3 cut(s)	22, 136, 264
MseI	TTAA	3 cut(s)	14, 39, 60
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	251
NlaIII	CATG	5 cut(s)	212, 224, 292, 308, 319
NspI	RCATGY	1 cut(s)	292
PaeI	GCATGC	1 cut(s)	292
PfeI	GAWTC	3 cut(s)	107, 176, 319
PflMI	CCANNNNNTGG	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	224
PstNI	CAGNNNCTG	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	14, 39, 60
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	36, 124
SetI	ASST	5 cut(s)	33, 91, 142, 229, 252
SinI	GGWCC	1 cut(s)	224
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	7 cut(s)	15, 23, 74, 147, 169, 266, 275
SsiI	CCGC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	196, 328
TasI	AATT	7 cut(s)	15, 23, 74, 147, 169, 266, 275
TfiI	GAWTC	3 cut(s)	107, 176, 319
Tru1I	TTAA	3 cut(s)	14, 39, 60
Tru9I	TTAA	3 cut(s)	14, 39, 60
TspDTI	ATGAA	4 cut(s)	120, 197, 293, 332
Van91I	CCANNNNNTGG	1 cut(s)	76
VneI	GTGCAC	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	2 cut(s)	169, 275
XceI	RCATGY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.