Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Forward (+)

29101415 .. 29107008

Gene Structure 5594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1162400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGTATGAGTCTGCCTTCGACATTCTTCTGTTTCTAAGCTATGTAGTGAGCATCAGTGGGCAGATCCAGATGCTGCATGATGATGTATCCAAAATTCAACTTGACTTGATTCCAAGGATTGAAAAAATCATTTCTGAGTGGCTTCTTATACATTTCTGTGCCACCACGCCATCTGAATCAGCTGAAATTGAAGATTTTAGCTCTCAGCTTTCAGTGTTACATATTGATAGAAACATGGGAAGAAGATCAAGGACTGAGAAGCTTGGAAAGTGTGAGTTCACTCTGGCTTTTTTATTCTTACCAAGCATTCGAACTTCCTCTGGACACCAGGTCTGTATTGCCTTGAGAAGCATACCAGACGTGAAGGACATTAGTATTTCAATGCGGGACTTTGTTAGCTGGATCATCTGGGGCCACACTGCAGAATCCTTTACCTTCCTCAAACGTGCAACAGATCTTGCTTTGATCCTTCTAAGGCATGGACAGTATGATGAGGTTGAGCACCTACTCACTATGGTGGAGGCACATTTACAAAAGGAGAAGACATCTTATAGTATCCAAGATACAGAGGGAGGATGGTGCATACTTCATCATCTTTTAGGGTGTTGCTTCCTTACTCAGGGCATTGAATCTGACTTCTTGAAGAAAGTTATCTCCAACTTTAACTTCAAAGCTTCGTCTGGAAAAGGAACATCCCAGGCTTTACGGAGTTTGCTTCAGGAACCGGGGTCTCCAAATCTTGGTTTCACTGGTGATATATCAGCTTCCTCATGGAGACTGCATTATTACCAATGGGCTATGCAGATCTTTGAGCAATATAATATTAGCGAAGGCGCTTGTCAGTTTGCTCTCGCTGCGCTTGAGGAGGTAGAGGAAGCTAGTGTTAAAGATGAGCTGAATGGACAAGACTCGGTCAATGAGTCAGTATCTACCATCAAAGGACGACTTTGGGCAAATGTCTTCAAGTTTACTTTAGATCATAATCTCTATTGTGATGCATATTCTGCAGTAATTTCAAACCCAGATGAGGAGAGCAAGTACATCTGCTTGAGGCGTCTGATAATTGTTCTTTACGAGCGTGGTGCCATAAAGATTCTTTGTGGTGGTAAGCTACCTTTTGTTGTTGGTCTTACAAAGAAGGCAGATTGTTCAGGTATATTAGCAAAGCCAGACTTATATAAGTTGCTTTATGCATTTGAAATGCATCAACATAACTGGAGAAGAGCAGCATGCTACATGTACCTATATTCTGCTCGTTTGAGAAAAGAAACAGCTCTGAGAGATTACCAGCACACGTCATTGGCACTAAAGGAGATTCTGAATTGGCTCTCTGCTGCTATCAATGCACTTCATCTTGTTCATCCGGCCAACGCTTGGATTGATCCTCTACTCTGGAGAATTCTCTTCAAAACGAGCACTATCCAAGTGAAAAGGCTAGAATTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

483

Amino Acids

54.96

Weight (kDa)

6.39

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUP160_helical_2	PF17238	1 - 36	9.1e-13	NUP160, helical domain
TPR_NUP160_120_M	PF23354	193 - 452	2.1e-29	NUP160/120 middle TPR
HEAT_Nup120	PF23300	246 - 358	3.9e-13	Nucleoporin Nup120, HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1082
AccB7I	CCANNNNNTGG	2 cut(s)	740, 1374
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	4 cut(s)	58, 410, 460, 1376
AcoI	YGGCCR	1 cut(s)	1365
AcsI	RAATTY	2 cut(s)	93, 1398
AcuI	CTGAAG	1 cut(s)	701
AcyI	GRCGYC	1 cut(s)	1054
AfaI	GTAC	2 cut(s)	1040, 1241
AfiI	CCNNNNNNNGG	4 cut(s)	619, 740, 1027, 1374
AflIII	ACRYGT	2 cut(s)	1236, 1293
AhdI	GACNNNNNGTC	1 cut(s)	329
AjiI	CACGTC	2 cut(s)	361, 1296
AjnI	CCWGG	2 cut(s)	327, 696
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AleI	CACNNNNGTG	1 cut(s)	515
Alw21I	GWGCWC	2 cut(s)	504, 1418
Alw26I	GTCTC	2 cut(s)	735, 769
AlwI	GGATC	4 cut(s)	58, 410, 460, 1376
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	2 cut(s)	412, 1365
ApeKI	GCWGC	4 cut(s)	73, 854, 1226, 1334
ApoI	RAATTY	2 cut(s)	93, 1398
AspLEI	GCGC	2 cut(s)	836, 859
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	726
AsuHPI	GGTGA	1 cut(s)	764
AsuII	TTCGAA	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	1082
BbsI	GAAGAC	2 cut(s)	548, 952
Bbv12I	GWGCWC	2 cut(s)	504, 1418
BbvI	GCAGC	4 cut(s)	60, 841, 1238, 1321
BccI	CCATC	3 cut(s)	178, 570, 941
BcgI	CGANNNNNNTGC	2 cut(s)	1064, 1098
BciT130I	CCWGG	2 cut(s)	329, 698
BciVI	GTATCC	2 cut(s)	97, 566
BcnI	CCSGG	1 cut(s)	726
BcoDI	GTCTC	2 cut(s)	735, 769
BfaI	CTAG	2 cut(s)	879, 1436
BfmI	CTRYAG	2 cut(s)	420, 1005
BfoI	RGCGCY	1 cut(s)	837
BfuI	GTATCC	2 cut(s)	97, 566
BglII	AGATCT	2 cut(s)	454, 804
BisI	GCNGC	4 cut(s)	74, 855, 1227, 1335
BlsI	GCNGC	4 cut(s)	75, 856, 1228, 1336
Bme1390I	CCNGG	3 cut(s)	329, 698, 726
BmeRI	GACNNNNNGTC	1 cut(s)	329
BmgBI	CACGTC	2 cut(s)	361, 1296
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	3 cut(s)	413, 723, 1084
BmrFI	CCNGG	3 cut(s)	329, 698, 726
BmsI	GCATC	4 cut(s)	60, 60, 985, 1213
BpiI	GAAGAC	2 cut(s)	548, 952
BpmI	CTGGAG	2 cut(s)	1237, 1414
Bpu14I	TTCGAA	1 cut(s)	310
BpuEI	CTTGAG	3 cut(s)	364, 881, 1069
BpuMI	CCSGG	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	981
BsaHI	GRCGYC	1 cut(s)	1054
BsaI	GGTCTC	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	113, 696, 725
BsaXI	ACNNNNNCTCC	2 cut(s)	1022, 1052
Bsc4I	CCNNNNNNNGG	4 cut(s)	619, 740, 1027, 1374
Bse1I	ACTGG	2 cut(s)	754, 1220
Bse8I	GATNNNNATC	1 cut(s)	981
BseBI	CCWGG	2 cut(s)	329, 698
BseDI	CCNNGG	3 cut(s)	113, 696, 725
BseGI	GGATG	3 cut(s)	581, 692, 1360
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	4 cut(s)	619, 740, 1027, 1374
BseMII	CTCAG	5 cut(s)	126, 218, 246, 632, 1268
BseNI	ACTGG	2 cut(s)	754, 1220
BseRI	GAGGAG	2 cut(s)	878, 1043
BseXI	GCAGC	4 cut(s)	60, 841, 1238, 1321
BshFI	GGCC	2 cut(s)	414, 1367
BshNI	GGYRCC	1 cut(s)	1082
BsiHKAI	GWGCWC	2 cut(s)	504, 1418
BsiSI	CCGG	2 cut(s)	725, 1364
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	4 cut(s)	619, 740, 1027, 1374
BsmAI	GTCTC	2 cut(s)	735, 769
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	414, 1367
Bso31I	GGTCTC	1 cut(s)	735
Bsp119I	TTCGAA	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	504, 1418
Bsp143I	GATC	8 cut(s)	63, 245, 402, 454, 465, 804, 976, 1381
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	2 cut(s)	414, 1367
BspCNI	CTCAG	5 cut(s)	127, 217, 247, 631, 1269
BspLI	GGNNCC	3 cut(s)	413, 723, 1084
BspMAI	CTGCAG	2 cut(s)	424, 1009
BspPI	GGATC	4 cut(s)	58, 410, 460, 1376
BspQI	GCTCTTC	1 cut(s)	1216
BspT104I	TTCGAA	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	1082
BspTNI	GGTCTC	1 cut(s)	735
BsrI	ACTGG	2 cut(s)	754, 1220
BssECI	CCNNGG	3 cut(s)	113, 696, 725
BssMI	GATC	8 cut(s)	63, 245, 402, 454, 465, 804, 976, 1381
BssNI	GRCGYC	1 cut(s)	1054
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	2 cut(s)	329, 698
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	2 cut(s)	1216, 1409
BstACI	GRCGYC	1 cut(s)	1054
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstBI	TTCGAA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	1231
BstDEI	CTNAG	7 cut(s)	35, 135, 204, 255, 473, 618, 1277
BstENI	CCTNNNNNAGG	1 cut(s)	617
BstF5I	GGATG	3 cut(s)	581, 692, 1360
BstH2I	RGCGCY	1 cut(s)	837
BstHHI	GCGC	2 cut(s)	836, 859
BstKTI	GATC	8 cut(s)	66, 248, 405, 457, 468, 807, 979, 1384
BstMAI	GTCTC	2 cut(s)	735, 769
BstMBI	GATC	8 cut(s)	63, 245, 402, 454, 465, 804, 976, 1381
BstMWI	GCNNNNNNNGC	3 cut(s)	854, 1004, 1343
BstNI	CCWGG	2 cut(s)	329, 698
BstNSI	RCATGY	2 cut(s)	1233, 1240
BstSCI	CCNGG	3 cut(s)	327, 696, 724
BstSFI	CTRYAG	2 cut(s)	420, 1005
BstV1I	GCAGC	4 cut(s)	60, 841, 1238, 1321
BstV2I	GAAGAC	2 cut(s)	548, 952
BstX2I	RGATCY	3 cut(s)	63, 454, 804
BstYI	RGATCY	3 cut(s)	63, 454, 804
BsuI	GTATCC	2 cut(s)	97, 566
BsuRI	GGCC	2 cut(s)	414, 1367
BtrI	CACGTC	2 cut(s)	361, 1296
BtsCI	GGATG	3 cut(s)	581, 692, 1360
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	4 cut(s)	61, 219, 417, 747
Cac8I	GCNNGC	1 cut(s)	1231
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	2 cut(s)	836, 859
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	1 cut(s)	1043
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	1039, 1240
CviAII	CATG	6 cut(s)	77, 235, 479, 771, 1230, 1237
CviQI	GTAC	2 cut(s)	1039, 1240
DdeI	CTNAG	7 cut(s)	35, 135, 204, 255, 473, 618, 1277
DpnI	GATC	8 cut(s)	65, 247, 404, 456, 467, 806, 978, 1383
DpnII	GATC	8 cut(s)	63, 245, 402, 454, 465, 804, 976, 1381
DriI	GACNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	1365
Eam1104I	CTCTTC	2 cut(s)	1216, 1409
Eam1105I	GACNNNNNGTC	1 cut(s)	329
EarI	CTCTTC	2 cut(s)	1216, 1409
Eco130I	CCWWGG	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	735
Eco57I	CTGAAG	1 cut(s)	701
EcoNI	CCTNNNNNAGG	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	1398
EcoRII	CCWGG	2 cut(s)	327, 696
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	3 cut(s)	1000, 1195, 1206
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	6 cut(s)	80, 238, 482, 774, 1233, 1240
FalI	AAGNNNNNCTT	4 cut(s)	930, 962, 1157, 1189
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	6 cut(s)	76, 234, 478, 770, 1229, 1236
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	4 cut(s)	74, 855, 1227, 1335
FokI	GGATG	3 cut(s)	588, 679, 1347
Fsp4HI	GCNGC	4 cut(s)	74, 855, 1227, 1335
FspBI	CTAG	2 cut(s)	879, 1436
GlaI	GCGC	2 cut(s)	835, 858
GluI	GCNGC	4 cut(s)	74, 855, 1227, 1335
GsuI	CTGGAG	2 cut(s)	1237, 1414
HaeII	RGCGCY	1 cut(s)	837
HaeIII	GGCC	2 cut(s)	414, 1367
HapII	CCGG	2 cut(s)	725, 1364
HgaI	GACGC	1 cut(s)	1043
HhaI	GCGC	2 cut(s)	836, 859
Hin1I	GRCGYC	1 cut(s)	1054
Hin1II	CATG	6 cut(s)	80, 238, 482, 774, 1233, 1240
Hin6I	GCGC	2 cut(s)	834, 857
HinP1I	GCGC	2 cut(s)	834, 857
HindIII	AAGCTT	2 cut(s)	260, 672
HinfI	GANTC	9 cut(s)	8, 109, 176, 425, 629, 908, 920, 1093, 1315
HpaII	CCGG	2 cut(s)	725, 1364
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	2 cut(s)	279, 969
Hpy188I	TCNGA	6 cut(s)	136, 175, 634, 1059, 1278, 1320
Hpy188III	TCNNGA	6 cut(s)	67, 321, 640, 681, 719, 1393
Hpy8I	GTNNAC	2 cut(s)	279, 969
HpyAV	CCTTC	6 cut(s)	25, 358, 445, 479, 824, 1132
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	3 cut(s)	360, 445, 1295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	854, 1004, 1343
HpyF3I	CTNAG	7 cut(s)	35, 135, 204, 255, 473, 618, 1277
HpySE526I	ACGT	3 cut(s)	360, 445, 1295
Hsp92I	GRCGYC	1 cut(s)	1054
Hsp92II	CATG	6 cut(s)	80, 238, 482, 774, 1233, 1240
HspAI	GCGC	2 cut(s)	834, 857
Kzo9I	GATC	8 cut(s)	63, 245, 402, 454, 465, 804, 976, 1381
LguI	GCTCTTC	1 cut(s)	1216
Lsp1109I	GCAGC	4 cut(s)	60, 841, 1238, 1321
LweI	GCATC	4 cut(s)	60, 60, 985, 1213
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	2 cut(s)	879, 1436
MaeII	ACGT	3 cut(s)	360, 445, 1295
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	8 cut(s)	65, 247, 404, 456, 467, 806, 978, 1383
MboI	GATC	8 cut(s)	63, 245, 402, 454, 465, 804, 976, 1381
MboII	GAAGA	9 cut(s)	17, 203, 252, 255, 553, 655, 952, 1233, 1396
MflI	RGATCY	3 cut(s)	63, 454, 804
MhlI	GDGCHC	2 cut(s)	504, 1418
MluCI	AATT	7 cut(s)	93, 186, 1011, 1062, 1321, 1398, 1439
MlyI	GAGTC	3 cut(s)	17, 902, 929
MmeI	TCCRAC	1 cut(s)	681
Mph1103I	ATGCAT	3 cut(s)	1000, 1195, 1206
MseI	TTAA	2 cut(s)	663, 885
MslI	CAYNNNNRTG	3 cut(s)	81, 156, 515
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	2 cut(s)	725, 1364
MspR9I	CCNGG	3 cut(s)	329, 698, 726
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	329, 698
MwoI	GCNNNNNNNGC	3 cut(s)	854, 1004, 1343
NciI	CCSGG	1 cut(s)	726
NdeII	GATC	8 cut(s)	63, 245, 402, 454, 465, 804, 976, 1381
NlaIII	CATG	6 cut(s)	80, 238, 482, 774, 1233, 1240
NlaIV	GGNNCC	3 cut(s)	413, 723, 1084
NsiI	ATGCAT	3 cut(s)	1000, 1195, 1206
NspI	RCATGY	2 cut(s)	1233, 1240
NspV	TTCGAA	1 cut(s)	310
OliI	CACNNNNGTG	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	1233
PciI	ACATGT	1 cut(s)	1236
PciSI	GCTCTTC	1 cut(s)	1216
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	6 cut(s)	109, 176, 425, 629, 1093, 1315
PflFI	GACNNNGTC	1 cut(s)	911
PflMI	CCANNNNNTGG	2 cut(s)	740, 1374
PkrI	GCNGC	4 cut(s)	75, 856, 1228, 1336
PleI	GAGTC	3 cut(s)	16, 902, 928
PpsI	GAGTC	3 cut(s)	16, 902, 928
PscI	ACATGT	1 cut(s)	1236
Psp6I	CCWGG	2 cut(s)	327, 696
PspGI	CCWGG	2 cut(s)	327, 696
PspN4I	GGNNCC	3 cut(s)	413, 723, 1084
PspPI	GGNCC	1 cut(s)	412
PstI	CTGCAG	2 cut(s)	424, 1009
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	3 cut(s)	63, 454, 804
PsyI	GACNNNGTC	1 cut(s)	911
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	1040, 1241
RsaNI	GTAC	2 cut(s)	1039, 1240
RseI	CAYNNNNRTG	3 cut(s)	81, 156, 515
SapI	GCTCTTC	1 cut(s)	1216
SaqAI	TTAA	2 cut(s)	663, 885
SatI	GCNGC	4 cut(s)	74, 855, 1227, 1335
Sau3AI	GATC	8 cut(s)	63, 245, 402, 454, 465, 804, 976, 1381
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	3 cut(s)	17, 902, 929
ScrFI	CCNGG	3 cut(s)	329, 698, 726
SduI	GDGCHC	2 cut(s)	504, 1418
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	4 cut(s)	60, 60, 985, 1213
SfcI	CTRYAG	2 cut(s)	420, 1005
SfuI	TTCGAA	1 cut(s)	310
SmiMI	CAYNNNNRTG	3 cut(s)	81, 156, 515
SmlI	CTYRAG	3 cut(s)	343, 860, 1048
SmoI	CTYRAG	3 cut(s)	343, 860, 1048
SphI	GCATGC	1 cut(s)	1233
Sse9I	AATT	7 cut(s)	93, 186, 1011, 1062, 1321, 1398, 1439
SsiI	CCGC	1 cut(s)	385
SspI	AATATT	1 cut(s)	823
SspMI	CTAG	2 cut(s)	879, 1436
StyD4I	CCNGG	3 cut(s)	327, 696, 724
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	3 cut(s)	363, 448, 1298
TaqI	TCGA	2 cut(s)	18, 310
TaqII	GACCGA	1 cut(s)	901
TasI	AATT	7 cut(s)	93, 186, 1011, 1062, 1321, 1398, 1439
TatI	WGTACW	1 cut(s)	1038
TfiI	GAWTC	6 cut(s)	109, 176, 425, 629, 1093, 1315
Tru1I	TTAA	2 cut(s)	663, 885
Tru9I	TTAA	2 cut(s)	663, 885
TscAI	CASTG	4 cut(s)	61, 219, 424, 754
TseI	GCWGC	4 cut(s)	73, 854, 1226, 1334
TspDTI	ATGAA	3 cut(s)	578, 1340, 1349
TspGWI	ACGGA	1 cut(s)	721
TspRI	CASTG	4 cut(s)	61, 219, 424, 754
Tth111I	GACNNNGTC	1 cut(s)	911
Van91I	CCANNNNNTGG	2 cut(s)	740, 1374
XagI	CCTNNNNNAGG	1 cut(s)	617
XapI	RAATTY	2 cut(s)	93, 1398
XceI	RCATGY	2 cut(s)	1233, 1240
XspI	CTAG	2 cut(s)	879, 1436
Zsp2I	ATGCAT	3 cut(s)	1000, 1195, 1206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.