Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

6075970 .. 6080752

Gene Structure 4783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1034800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTATCTAAGGTACTTCTGATGATCTCATCCATCTTGTTACCATGGAGGCGGGTTTTAATTCTTCAATTAGAGGTGCTCGTTAAAATGCTTAGATGTGTTGTTAATGTCAGCCAACAATTGGGAAAAACAGCTTCTGCTATATTTTATGAATCATTAGTTAGTGCACCACTCGTTATCTCAGCTGAGGAAATTACTCATCGCCTTTTGAAGAATTTAGAATCTGGATATGGTTCAACGGTAGCAATGCTTCATGTATCAGAGCATGGACCTGATGTTGCTTTGGAGAGAAACCTGGCTGATAAAAAAAAATTGAGGAAATTTTATATTGGCATGCTGTTATCTCTTCATGCCTTGCACATGAATCGTACTGTTATTTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

129

Amino Acids

14.38

Weight (kDa)

9.77

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUP160_helical_2	PF17238	24 - 121	1.5e-35	NUP160, helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	214, 320
AfaI	GTAC	2 cut(s)	15, 370
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	68, 211, 237
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	2 cut(s)	134, 185
AluI	AGCT	2 cut(s)	134, 185
Alw21I	GWGCWC	2 cut(s)	81, 169
Alw44I	GTGCAC	1 cut(s)	165
AlwNI	CAGNNNCTG	1 cut(s)	137
ApaLI	GTGCAC	1 cut(s)	165
ApoI	RAATTY	2 cut(s)	214, 320
AspS9I	GGNCC	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	169
BarI	GAAGNNNNNNTAC	2 cut(s)	234, 266
Bbv12I	GWGCWC	2 cut(s)	81, 169
BbvCI	CCTCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	41
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	1 cut(s)	296
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	177, 195
BseSI	GKGCMC	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	81, 169
BslI	CCNNNNNNNGG	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	81, 169
Bsp143I	GATC	1 cut(s)	24
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	1 cut(s)	52
BspCNI	CTCAG	2 cut(s)	178, 194
BsrDI	GCAATG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	2 cut(s)	241, 373
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	4 cut(s)	9, 92, 181, 186
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	169
BtgI	CCRYGG	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	335
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	14, 369
CviAII	CATG	6 cut(s)	45, 254, 266, 334, 350, 361
CviJI	RGCY	4 cut(s)	114, 134, 185, 299
CviKI_1	RGCY	4 cut(s)	114, 134, 185, 299
CviQI	GTAC	2 cut(s)	14, 369
DdeI	CTNAG	4 cut(s)	9, 92, 181, 186
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	6 cut(s)	48, 257, 269, 337, 353, 364
FatI	CATG	6 cut(s)	44, 253, 265, 333, 349, 360
FauI	CCCGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	16
Hin1II	CATG	6 cut(s)	48, 257, 269, 337, 353, 364
HinfI	GANTC	3 cut(s)	152, 221, 364
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	21, 262
Hpy188III	TCNNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	241, 373
HpyCH4V	TGCA	2 cut(s)	167, 358
HpyF3I	CTNAG	4 cut(s)	9, 92, 181, 186
Hsp92II	CATG	6 cut(s)	48, 257, 269, 337, 353, 364
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	4 cut(s)	210, 281, 285, 308
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	3 cut(s)	56, 223, 338
MfeI	CAATTG	1 cut(s)	119
MhlI	GDGCHC	2 cut(s)	81, 169
MluCI	AATT	7 cut(s)	60, 68, 119, 192, 214, 311, 320
MnlI	CCTC	4 cut(s)	42, 67, 181, 309
MseI	TTAA	3 cut(s)	59, 84, 105
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	6 cut(s)	48, 257, 269, 337, 353, 364
NspI	RCATGY	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	337
PfeI	GAWTC	3 cut(s)	152, 221, 364
PflMI	CCANNNNNTGG	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	15, 370
RsaNI	GTAC	2 cut(s)	14, 369
SaqAI	TTAA	3 cut(s)	59, 84, 105
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	81, 169
SetI	ASST	6 cut(s)	15, 78, 136, 187, 274, 297
SinI	GGWCC	1 cut(s)	269
SphI	GCATGC	1 cut(s)	337
Sse9I	AATT	7 cut(s)	60, 68, 119, 192, 214, 311, 320
SsiI	CCGC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	241, 373
TasI	AATT	7 cut(s)	60, 68, 119, 192, 214, 311, 320
TfiI	GAWTC	3 cut(s)	152, 221, 364
Tru1I	TTAA	3 cut(s)	59, 84, 105
Tru9I	TTAA	3 cut(s)	59, 84, 105
TspDTI	ATGAA	4 cut(s)	165, 242, 338, 377
Van91I	CCANNNNNTGG	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	2 cut(s)	214, 320
XceI	RCATGY	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.