Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Forward (+)

11127663 .. 11129791

Gene Structure 2129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1063300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTGTCTATTGTTTTAGGGGGTGTTAGTGATAATTCAACGTCAATATTGTGCTGTTGGAAAAAATTCTGTTCTCCCTACTTCCAAAATTGGTGCAAGAGCAATGCACTATGTGGCTTGCTTTTGGATTCCTACAGGGGTAGTTTTGGATTGATCAGAAAGAACTCAGTATCTCTTTTTCGTTGTTCGGAGAATATTGAGCGGCTTATTAATGGTATCTCAGGTACTTCTGATGATCTCATCCATCTTGTTACCATGGAGGCGGGTTTAATTCTTCAATTAGAGGTGCTCGTTAAAATGCTTAGATGTGTTGTTAATGTCAGCCAACAATTGGGAAAAACAGCTTCTGCTATATTTTATGAATCATTAGTTAGTGCACCACTCGTTATCTCAGCTGAGGAAATTACTCATCGCCTTTTGAAGAATTTAGAATCTGGATATGGTTCAACGGTAGCAATGCTTCATGTATCAGAGCATGGACCTGATGTTGCTTTGGAGAGAAACCTGGCTGATAAAAAAAAATTGAGGAAATTTTCTATTGGCATGCTGTTATCTCTTCATGCCTTGCACATGAATCGTACTGTTATTTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

199

Amino Acids

21.86

Weight (kDa)

8.7

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	16 - 67	1.7e-09	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	93 - 191	3.1e-36	NUP160, helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	2 cut(s)	202, 263
AcsI	RAATTY	3 cut(s)	65, 424, 530
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	2 cut(s)	226, 580
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	4 cut(s)	39, 278, 421, 447
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	2 cut(s)	344, 395
AluI	AGCT	2 cut(s)	344, 395
Alw21I	GWGCWC	2 cut(s)	291, 379
Alw44I	GTGCAC	1 cut(s)	375
AlwNI	CAGNNNCTG	1 cut(s)	347
ApaLI	GTGCAC	1 cut(s)	375
ApoI	RAATTY	3 cut(s)	65, 424, 530
AseI	ATTAAT	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	379
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
Bbv12I	GWGCWC	2 cut(s)	291, 379
BbvCI	CCTCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	252
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	1 cut(s)	506
BclI	TGATCA	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	133
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmrFI	CCNGG	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse3DI	GCAATG	2 cut(s)	109, 462
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	2 cut(s)	109, 462
BseMII	CTCAG	4 cut(s)	180, 234, 387, 405
BseSI	GKGCMC	1 cut(s)	379
BsiHKAI	GWGCWC	2 cut(s)	291, 379
BslI	CCNNNNNNNGG	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	291, 379
Bsp143I	GATC	2 cut(s)	153, 235
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	2 cut(s)	202, 263
BspCNI	CTCAG	4 cut(s)	179, 233, 388, 404
BsrBI	CCGCTC	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	109, 462
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	153, 235
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	2 cut(s)	451, 583
Bst6I	CTCTTC	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	119, 545
BstDEI	CTNAG	5 cut(s)	166, 220, 302, 391, 396
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	2 cut(s)	156, 238
BstMBI	GATC	2 cut(s)	153, 235
BstNI	CCWGG	1 cut(s)	506
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	379
BtgI	CCRYGG	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	119, 545
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	225, 579
CviAII	CATG	6 cut(s)	256, 464, 476, 544, 560, 571
CviJI	RGCY	6 cut(s)	117, 205, 324, 344, 395, 509
CviKI_1	RGCY	6 cut(s)	117, 205, 324, 344, 395, 509
CviQI	GTAC	2 cut(s)	225, 579
DdeI	CTNAG	5 cut(s)	166, 220, 302, 391, 396
DpnI	GATC	2 cut(s)	155, 237
DpnII	GATC	2 cut(s)	153, 235
DraIII	CACNNNGTG	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	6 cut(s)	259, 467, 479, 547, 563, 574
FatI	CATG	6 cut(s)	255, 463, 475, 543, 559, 570
FauI	CCCGC	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
Hin1II	CATG	6 cut(s)	259, 467, 479, 547, 563, 574
HinfI	GANTC	4 cut(s)	128, 362, 431, 574
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	4 cut(s)	158, 190, 232, 472
Hpy188III	TCNNGA	1 cut(s)	435
Hpy8I	GTNNAC	1 cut(s)	377
HpyCH4III	ACNGT	2 cut(s)	451, 583
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	96, 107, 377, 568
HpyF3I	CTNAG	5 cut(s)	166, 220, 302, 391, 396
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	6 cut(s)	259, 467, 479, 547, 563, 574
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	153, 235
LpnPI	CCDG	6 cut(s)	121, 207, 420, 491, 495, 518
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	2 cut(s)	155, 237
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	2 cut(s)	153, 235
MboII	GAAGA	3 cut(s)	266, 433, 548
MfeI	CAATTG	1 cut(s)	329
MhlI	GDGCHC	2 cut(s)	291, 379
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	253, 277, 391, 519
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	4 cut(s)	210, 269, 294, 315
MspA1I	CMGCKG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	506
MunI	CAATTG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	506
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	153, 235
NlaIII	CATG	6 cut(s)	259, 467, 479, 547, 563, 574
NspI	RCATGY	1 cut(s)	547
PaeI	GCATGC	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	4 cut(s)	128, 362, 431, 574
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	204
PshBI	ATTAAT	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	2 cut(s)	226, 580
RsaNI	GTAC	2 cut(s)	225, 579
SaqAI	TTAA	4 cut(s)	210, 269, 294, 315
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	153, 235
Sau96I	GGNCC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	2 cut(s)	291, 379
SetI	ASST	7 cut(s)	44, 226, 288, 346, 397, 484, 507
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	479
SphI	GCATGC	1 cut(s)	547
SsiI	CCGC	2 cut(s)	202, 263
SspI	AATATT	2 cut(s)	48, 196
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	451, 583
TaiI	ACGT	1 cut(s)	44
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	4 cut(s)	128, 362, 431, 574
Tru1I	TTAA	4 cut(s)	210, 269, 294, 315
Tru9I	TTAA	4 cut(s)	210, 269, 294, 315
TspDTI	ATGAA	4 cut(s)	375, 452, 548, 587
Van91I	CCANNNNNTGG	1 cut(s)	331
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	3 cut(s)	65, 424, 530
XceI	RCATGY	1 cut(s)	547
XmnI	GAANNNNTTC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.