Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

20180250 .. 20197786

Gene Structure 17537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26400.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4452 bp

ATGGAGGTCCCAATCCTCGGCAGCGATTCACTGAAATGGATCGAGTTCCCTGTCCCTTCTGATGCCGCCTCCGCCTCCGCCGATACTTGCGCCCCTCTCACTCACGACTGCGCTTCTTCCATCGCCATCGGAGACCCTCCCACCTATCTCATATGGAGAATCCACAAGCATCTCCCTCACGCTCTCGAACTACTCGAGCTCTGTGCCAACAAGGAGTTTCCAAAACTCGGTCTGCGAATCACTTTTCCACAAGCGCTTTCTTCCTCGGTTTTCCTCTGCAAAAATGAAATTGATATCGGTTCCAGGAGCCATCCCTATCTGCTTTATGCGCTCACCGTCGCCGGAGTCGCTTACCTTTTGAGGCTCGGAACCGTCTCCAATTATGCCTCCAGCTCTGTTATCAGAGAGGTTAGCTTGCATCCCCATGGACCTATAACGAGTGCGGCGGCGACGCCTACTGGATGTCTTGTTGTAGGCCGCAACGACGGCTCGCTCGCTTGCTTTCAACTTACACTTGACTCCACTGCTCCTGGTTTTCTGCAAGAGCTTCGGGATGATCCAGGAATCAGTAGCTTGTGGGGTTTCATGGCAAGGGGTAGGATAGTAGGGGCTGTGCAGGACTTGGCTATATCTATGGTTCATGGGAAACCACTTATATTTGTGATTCATACGGATGGGGTGTTACGTGTATGGGATCTCTTATTTCATAGCAGGCTCTTTTCCCATAAGTTGAACGGTCCGACAATGGCAGGAGCTGCATTAGTAAGAGTGTGGGTTGGTCAAGCTGAAAACAATTCGAGCATAATTCCTTTGGCAATCTTGTACAGTGAGAATTTGGAAATTAACTCAGACACCATCTACGTATATAGCCTCCATTGTAATGTGGGAGACAGAATTGTTTTATTGATGGAACCTTTAGAACAAATTATTCCTATTGAGGAGGATGGATGGATTGATGTCAAACTTATTTCCAACAAGATATGCATATTGAAAAATAATGGTCTGGTGCTTCATGACTTGCTGCATAAGAATGTCAACACGGTTGATGCCGTTTGTTATGCTTTGCAAGAGGACTTTGTTGCAGATCAACTCTTTCAAAGTTCTGAACATTCTTCAGACAACCTTCTTTTGATAACTCATTCAGTATTTTCATCTTCAAAGGATCATATTCTACCGGTTGTATCTTCTATTTTCTTACGTAGGCTGCTTCTTCCTGGCATTCATCATAATGCTGCTTTGCGCACAACTTTGTTGGATTATAATAGGCACTGGACCGAGTCAGATTTCCACTCCTTAACTGCTGATGGGTTGAAAAAAGAAATCCTTTCCCTGATTGAAGATGAGGGTCTGACTGGTAATCCATCGTCAATATTTTGCTGCTGGAAAAATTTTTGTGCTTGCTATTTCCAAAACTGGTGCAAGAGCAATGCACCATGTGGCTTGCTTGTTGATTCCTCAACCGGCACTGTTGGTTTAATTAGAAAGAGTTCAGTATCTCTTTTTCGTTCTTTGGAGGATATTGAGCGGGTTAATGATGGCTCTTTGGATGAGCTTGGCAATTCTCCAAGCTTTGGGTTGGATTCATTTGGTGAGGCTCTTGATTGTGAGATACTTGCTGAAATGCTGAGATGTGTCATTAACGTTAGCCAGCAATTGGGAAAAACAGCTTCTGCTATATATTATGAATCACTCATTAGAACACCACCAGTTATCTCACCTGAAGAAATTGTTCCACGTCTATTGAAGGTATTAGAAACTGGAATTAGTTCAACAGCAGCAATGCTTCATATATCGGATCTTGGAACTGATGTTGCCTGGGAGAAAAATCTAGCAGATCACAAAAATTTGAGGAAATTTTCTATCGACATGATGTTGTCTCTTCATGCTTTGCTCGAGAAATTTGGCACATGGAGCCGTATTTTGAGTGTGATTGAGAACTATCTAAAGTATCTCGTACCTCGGAAAATTACACAAAACTATGATGCTGAAGTAGCATTGGATATCAATGCCTCCATCTTGGTCCAGGCTACATCTCAAGTTGCAAAGGTTATGTTTGAGTCTGCACTGGATATTCATCTGTTTCTAAGCTATCTAGTGAGCATAAGTGGGCAGATCAATATGCTGCTTGATGATATATCCAAAATACAACTCATGTTGGTTCCCATGATTCAAGAAATCATTTATGAGTGGCTTCTCTTACATTTCTTTGCCACCACACCTTCTGAATCAGCTTCAATTGAAGATTTCAGCTCTCAACTTTCATTGTTACAAATTGGTAGCAACACAGGCAGAAGATCATGGAATGAGAAGCTTGGGAAGTGTGACTTCACTCTGGCTTTTATATTCTTACTCAATGTTAGAAGTTCTGACAAAGACCAGAGCCCCTTTTCTCCAAGAAGCATACCAAATGTTCAGGACATAATTGATTCAATACGAGAATTTGCTAGCTGGACCATGTGGGGCCAGAATGGGGAACCTCTTACTCCCCTGAGGCGTGCAGCGGATCTTGCATTGATTCTGCTTAGGCACAAGCAGTATGATGCTGTTGAGCGCCTACTCACTATTGTGGAGGCACATTTACAAAAGGAGAAGACTTCTCACGGTATTCAAGCTACAGATGGCGAATGGTGCATACTTCATCATCTTTTAGGATGCTGCTTCCTTGCTCAGGCACATCGTGGATTAAACGGGGTCCTGAAAGAGAAGAAAGTTCATGAAGCTGTTCTTTGTTTCTTCAGAGCTGCATCTGGAAAAGAAGCAGCTCAGGCTTTACAAAGCTTGCCTCAGGAAGTGGGGTTGCCACATCTTGGTATCGATGGTAGCGTATCAGATGCTGCATGGAGGCTGCATTACTATCAGTGGGCAATGCAGATATTTGAGCAATATAGTATTAGTGATGGTGCATGTCAGTTTGCCCTTGCTGCACTTGAGCAAGTTGAGGAGGCTGACAGTGCAAACAATGAGTCTCACGGCAGAGCTCCACATAATGAATCAGTATCTACCATTAAAGGAAGACTTTGGGCACATGTTTGCAAGTTTACTTTAGATCTGAATCTGTTTTATGATGCATATTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAGTACATCTGGTTGAGGCGTCTTATAATCGTTCTTTATGAACGTCGTGCCATAAAGATTCTTTGTGGTGGTCAGCTACCGTTCATTGGTCTTACAGAGAAGGTAGAACAAGAGCTTTCTTGGAAGGCAGAGCGGTCAGATATTTTAGCAAAGCCAAACTTATATAAGTTGCTTTATGCATTTGAAATGCATCAGCATAACTGGCGAAAAGCAGCAAGCTACATGTACCTTTATTCTGCCCGTTTGAGAACTGAAACATCTCTCAAAGGTTACAAGCAATTGTGGCGAGCACTGAAAGAAATCCAGAATGGGCTCTCTGCTGCTATCAACGCACTTTATCTTGTTCTTCCTGCATATGCTTGGATTGATCCTTTGCTTGAGAGAAATGCTCTTCACAACGAGCAGTATCCGAGTAAAAAGGCTAGAATAACAATTGAAGACCAGTCAGCAAGCAATGATGTTGATCCCCAAAGTTGGAAATCTTATATAGATATTCAGAAAATTGAGAATGAGTATGTGCTAACTTCAGCAGAATATCTGCTGTCATTGGCACATGTCAAATGGACAAATACAGGAACCCAGAAAGCACAATTAGAGTTGGTTGATCTCTTGATCGAGACAAATCTATATGATATGGCATTTACAGTTCTCTTAAGATTCTTCAAAGGTTCAGAATTAAAGAGGGGATTGGAAAGAGTTTTCTCTGCTATGTCACTAAAATGCTTTCCACATATAGTTGATTCTTCAAGGGTTGGGGATGATCCCACAACACAGGGTCTTCTGTTGACTTCTTCAAAGGATGAAGTGATTGTTCATGGTTCACCTGAAGTACATTCATCAAATCAACAACCCAACGGAATTAGTCAATGGGGAACTCTCGAGCTTTATCTTGACCGATATAAAGTGTTCCATGCCCGTCTACCATTTGTTGTTGCCGAAACTCTTCTTCGTACAGATTCTCAAATCGAACTGCCCCTTTGGTTGGTTAAATTATTCAAGGATGGCAGGAGGGAAAGGACATTGGGGATGACTGGCCAAGAATCAAATCCGGCGTTATTGTTTCAACTTTATGTTAATTATGGCCGATATAGAGAAGCTACGAATCTGTTGCTTGAGTACATAGGGTCTGTTGCATCCATGAGACGGGTCAACATCATGAATCGTAAAAGACCATTTGGAGTCTGGTTTCCATATACAACAATTCAGCGCCTCTGGTGCCAACTTGAGGAAATGATAAATTCAGGTCACATGGTGGATCAATGTAAGCACCTCAAAGATTTGCTACACGGAGCTTTGCTGAAACATCTCCAACTGGTAAAGGTGGACTCGGAAGATGCACTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

1484

Amino Acids

166.61

Weight (kDa)

5.91

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	49 - 508	2.9e-55	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	525 - 719	9.2e-90	NUP160, helical domain
TPR_NUP160_120_M	PF23354	898 - 1149	4.3e-33	NUP160/120 middle TPR
HEAT_Nup120	PF23300	899 - 1048	3.2e-11	Nucleoporin Nup120, HEAT repeats
TPR_Nup160_C	PF23347	1201 - 1413	2.7e-09	Nup160 C-terminal TPR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1260, 3131
Acc16I	TGCGCA	1 cut(s)	1241
AccB1I	GGYRCC	1 cut(s)	4320
AccB7I	CCANNNNNTGG	3 cut(s)	1571, 1654, 2807
AccBSI	CCGCTC	2 cut(s)	1525, 3238
AccI	GTMKAC	1 cut(s)	4024
AciI	CCGC	9 cut(s)	66, 72, 78, 443, 446, 478, 1525, 2501, 3238
AclI	AACGTT	1 cut(s)	1641
AcoI	YGGCCR	2 cut(s)	4138, 4186
AcsI	RAATTY	7 cut(s)	832, 1387, 1843, 1853, 1898, 2438, 4342
AcuI	CTGAAG	6 cut(s)	1098, 1740, 2007, 2719, 3615, 3951
AcyI	GRCGYC	2 cut(s)	452, 3124
AdeI	CACNNNGTG	3 cut(s)	1436, 2678, 4357
AfaI	GTAC	7 cut(s)	824, 1956, 3110, 3332, 3936, 4057, 4223
AfeI	AGCGCT	1 cut(s)	255
AflII	CTTAAG	1 cut(s)	3757
AflIII	ACRYGT	4 cut(s)	685, 3025, 3327, 3658
AgeI	ACCGGT	1 cut(s)	1174
AjiI	CACGTC	1 cut(s)	1736
AjnI	CCWGG	6 cut(s)	302, 529, 559, 1213, 1814, 2022
AleI	CACNNNNGTG	1 cut(s)	2564
Alw21I	GWGCWC	3 cut(s)	201, 2980, 3397
Alw26I	GTCTC	7 cut(s)	126, 379, 882, 1881, 2970, 3716, 4240
AlwNI	CAGNNNCTG	3 cut(s)	755, 1670, 2834
Ama87I	CYCGRG	3 cut(s)	194, 1892, 3983
Aor51HI	AGCGCT	1 cut(s)	255
AoxI	GGCC	4 cut(s)	475, 2461, 4138, 4186
ApoI	RAATTY	7 cut(s)	832, 1387, 1843, 1853, 1898, 2438, 4342
ArsI	GACNNNNNNTTYG	2 cut(s)	2948, 2980
AsiGI	ACCGGT	1 cut(s)	1174
Asp700I	GAANNNNTTC	5 cut(s)	1486, 1728, 1765, 2721, 4047
AspLEI	GCGC	7 cut(s)	92, 113, 256, 331, 1242, 2553, 4314
AspS9I	GGNCC	8 cut(s)	7, 428, 737, 1272, 2020, 2451, 2461, 2692
AsuHPI	GGTGA	4 cut(s)	325, 1601, 1707, 3918
AsuNHI	GCTAGC	1 cut(s)	2444
AvaI	CYCGRG	3 cut(s)	194, 1892, 3983
AvaII	GGWCC	7 cut(s)	7, 428, 737, 1272, 2020, 2451, 2692
AxyI	CCTNAGG	2 cut(s)	2489, 2784
BaeGI	GKGCMC	1 cut(s)	3025
BalI	TGGCCA	1 cut(s)	4140
BanI	GGYRCC	1 cut(s)	4320
BanII	GRGCYC	4 cut(s)	201, 2384, 2980, 3420
BbsI	GAAGAC	4 cut(s)	2597, 3019, 3549, 3875
Bbv12I	GWGCWC	3 cut(s)	201, 2980, 3397
BceAI	ACGGC	4 cut(s)	502, 1034, 1899, 2986
BcgI	CGANNNNNNTGC	6 cut(s)	185, 219, 530, 564, 4195, 4229
BciT130I	CCWGG	6 cut(s)	304, 531, 561, 1215, 1816, 2024
BciVI	GTATCC	1 cut(s)	3522
BcoDI	GTCTC	7 cut(s)	126, 379, 882, 1881, 2970, 3716, 4240
BfaI	CTAG	4 cut(s)	1829, 2093, 2445, 3528
BfmI	CTRYAG	1 cut(s)	2613
BfoI	RGCGCY	3 cut(s)	257, 2554, 4315
BfrI	CTTAAG	1 cut(s)	3757
BfuI	GTATCC	1 cut(s)	3522
BglII	AGATCT	1 cut(s)	3046
Bme1390I	CCNGG	6 cut(s)	304, 531, 561, 1215, 1816, 2024
Bme18I	GGWCC	7 cut(s)	7, 428, 737, 1272, 2020, 2451, 2692
BmeT110I	CYCGRG	3 cut(s)	194, 1892, 3983
BmgBI	CACGTC	1 cut(s)	1736
BmgT120I	GGNCC	8 cut(s)	7, 428, 737, 1272, 2020, 2451, 2461, 2692
BmrFI	CCNGG	6 cut(s)	304, 531, 561, 1215, 1816, 2024
BmtI	GCTAGC	1 cut(s)	2448
BpiI	GAAGAC	4 cut(s)	2597, 3019, 3549, 3875
BplI	GAGNNNNNCTC	2 cut(s)	3478, 3510
BpmI	CTGGAG	1 cut(s)	373
Bpu10I	CCTNAGC	3 cut(s)	2522, 2667, 2763
BpuEI	CTTGAG	5 cut(s)	2019, 2948, 3503, 4238, 4349
Bsa29I	ATCGAT	1 cut(s)	2814
BsaAI	YACGTR	3 cut(s)	686, 862, 1199
BsaBI	GATNNNNATC	3 cut(s)	2073, 3051, 3567
BsaHI	GRCGYC	2 cut(s)	452, 3124
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	5 cut(s)	16, 264, 424, 1815, 1958
BsaWI	WCCGGW	1 cut(s)	1174
BsaXI	ACNNNNNCTCC	2 cut(s)	3092, 3122
Bse118I	RCCGGY	2 cut(s)	1174, 1460
Bse21I	CCTNAGG	2 cut(s)	2489, 2784
Bse3DI	GCAATG	4 cut(s)	1432, 1785, 2871, 3565
Bse8I	GATNNNNATC	3 cut(s)	2073, 3051, 3567
BseBI	CCWGG	6 cut(s)	304, 531, 561, 1215, 1816, 2024
BseCI	ATCGAT	1 cut(s)	2814
BseDI	CCNNGG	5 cut(s)	16, 264, 424, 1815, 1958
BseJI	GATNNNNATC	3 cut(s)	2073, 3051, 3567
BseMI	GCAATG	4 cut(s)	1432, 1785, 2871, 3565
BseMII	CTCAG	6 cut(s)	861, 1616, 2480, 2681, 2777, 2798
BseRI	GAGGAG	3 cut(s)	953, 2954, 3113
BseSI	GKGCMC	1 cut(s)	3025
BsgI	GTGCAG	4 cut(s)	635, 2046, 2517, 2907
BshFI	GGCC	4 cut(s)	477, 2463, 4140, 4188
BshNI	GGYRCC	1 cut(s)	4320
BshTI	ACCGGT	1 cut(s)	1174
BshVI	ATCGAT	1 cut(s)	2814
BsiHKAI	GWGCWC	3 cut(s)	201, 2980, 3397
BsiHKCI	CYCGRG	3 cut(s)	194, 1892, 3983
BsiSI	CCGG	4 cut(s)	342, 1175, 1461, 4154
BslFI	GGGAC	1 cut(s)	38
BsmAI	GTCTC	7 cut(s)	126, 379, 882, 1881, 2970, 3716, 4240
BsmBI	CGTCTC	2 cut(s)	379, 4240
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	1218
BsnI	GGCC	4 cut(s)	477, 2463, 4140, 4188
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	3 cut(s)	194, 1892, 3983
Bsp1286I	GDGCHC	6 cut(s)	201, 2384, 2980, 3025, 3397, 3420
Bsp1407I	TGTACA	1 cut(s)	822
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	9 cut(s)	66, 72, 78, 443, 446, 478, 1525, 2501, 3238
BspANI	GGCC	4 cut(s)	477, 2463, 4140, 4188
BspCNI	CTCAG	6 cut(s)	860, 1617, 2481, 2680, 2776, 2797
BspDI	ATCGAT	1 cut(s)	2814
BspHI	TCATGA	3 cut(s)	1012, 2713, 4260
BspOI	GCTAGC	1 cut(s)	2448
BspQI	GCTCTTC	1 cut(s)	3501
BspT107I	GGYRCC	1 cut(s)	4320
BspTI	CTTAAG	1 cut(s)	3757
BspTNI	GGTCTC	1 cut(s)	126
BsrBI	CCGCTC	2 cut(s)	1525, 3238
BsrDI	GCAATG	4 cut(s)	1432, 1785, 2871, 3565
BsrFI	RCCGGY	2 cut(s)	1174, 1460
BsrGI	TGTACA	1 cut(s)	822
BssAI	RCCGGY	2 cut(s)	1174, 1460
BssECI	CCNNGG	5 cut(s)	16, 264, 424, 1815, 1958
BssNI	GRCGYC	2 cut(s)	452, 3124
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	6 cut(s)	304, 531, 561, 1215, 1816, 2024
Bst6I	CTCTTC	3 cut(s)	1884, 3501, 4053
BstACI	GRCGYC	2 cut(s)	452, 3124
BstAFI	CTTAAG	1 cut(s)	3757
BstAPI	GCANNNNNTGC	2 cut(s)	755, 3074
BstAUI	TGTACA	1 cut(s)	822
BstBAI	YACGTR	3 cut(s)	686, 862, 1199
BstDEI	CTNAG	9 cut(s)	847, 1625, 2084, 2489, 2522, 2667, 2763, 2784, 4445
BstDSI	CCRYGG	1 cut(s)	424
BstENI	CCTNNNNNAGG	1 cut(s)	2666
BstH2I	RGCGCY	3 cut(s)	257, 2554, 4315
BstHHI	GCGC	7 cut(s)	92, 113, 256, 331, 1242, 2553, 4314
BstMAI	GTCTC	7 cut(s)	126, 379, 882, 1881, 2970, 3716, 4240
BstNI	CCWGG	6 cut(s)	304, 531, 561, 1215, 1816, 2024
BstNSI	RCATGY	4 cut(s)	2907, 3029, 3331, 3662
BstSCI	CCNGG	6 cut(s)	302, 529, 559, 1213, 1814, 2022
BstSFI	CTRYAG	1 cut(s)	2613
BstSLI	GKGCMC	1 cut(s)	3025
BstSNI	TACGTA	2 cut(s)	862, 1199
BstV2I	GAAGAC	4 cut(s)	2597, 3019, 3549, 3875
BstX2I	RGATCY	4 cut(s)	694, 1795, 2503, 3046
BstYI	RGATCY	4 cut(s)	694, 1795, 2503, 3046
Bsu15I	ATCGAT	1 cut(s)	2814
Bsu36I	CCTNAGG	2 cut(s)	2489, 2784
BsuI	GTATCC	1 cut(s)	3522
BsuRI	GGCC	4 cut(s)	477, 2463, 4140, 4188
BsuTUI	ATCGAT	1 cut(s)	2814
BtgI	CCRYGG	1 cut(s)	424
BtgZI	GCGATG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	1736
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	9 cut(s)	29, 522, 832, 1267, 1464, 2063, 2864, 2956, 3395
CaiI	CAGNNNCTG	3 cut(s)	755, 1670, 2834
CciI	TCATGA	3 cut(s)	1012, 2713, 4260
CfoI	GCGC	7 cut(s)	92, 113, 256, 331, 1242, 2553, 4314
Cfr10I	RCCGGY	2 cut(s)	1174, 1460
Cfr13I	GGNCC	8 cut(s)	7, 428, 737, 1272, 2020, 2451, 2461, 2692
ClaI	ATCGAT	1 cut(s)	2814
CpoI	CGGWCCG	1 cut(s)	737
CseI	GACGC	2 cut(s)	460, 3113
Csp6I	GTAC	7 cut(s)	823, 1955, 3109, 3331, 3935, 4056, 4222
CspAI	ACCGGT	1 cut(s)	1174
CspCI	CAANNNNNGTGG	2 cut(s)	1722, 1757
CspI	CGGWCCG	1 cut(s)	737
CviQI	GTAC	7 cut(s)	823, 1955, 3109, 3331, 3935, 4056, 4222
DdeI	CTNAG	9 cut(s)	847, 1625, 2084, 2489, 2522, 2667, 2763, 2784, 4445
DraIII	CACNNNGTG	3 cut(s)	1436, 2678, 4357
EaeI	YGGCCR	2 cut(s)	4138, 4186
Eam1104I	CTCTTC	3 cut(s)	1884, 3501, 4053
EarI	CTCTTC	3 cut(s)	1884, 3501, 4053
EciI	GGCGGA	2 cut(s)	61, 67
Ecl136II	GAGCTC	2 cut(s)	199, 2978
Eco105I	TACGTA	2 cut(s)	862, 1199
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	4 cut(s)	201, 2384, 2980, 3420
Eco31I	GGTCTC	1 cut(s)	126
Eco32I	GATATC	2 cut(s)	295, 2002
Eco47I	GGWCC	7 cut(s)	7, 428, 737, 1272, 2020, 2451, 2692
Eco47III	AGCGCT	1 cut(s)	255
Eco53kI	GAGCTC	2 cut(s)	199, 2978
Eco57I	CTGAAG	6 cut(s)	1098, 1740, 2007, 2719, 3615, 3951
Eco81I	CCTNAGG	2 cut(s)	2489, 2784
Eco88I	CYCGRG	3 cut(s)	194, 1892, 3983
EcoICRI	GAGCTC	2 cut(s)	199, 2978
EcoNI	CCTNNNNNAGG	1 cut(s)	2666
EcoO109I	RGGNCCY	2 cut(s)	7, 2692
EcoRII	CCWGG	6 cut(s)	302, 529, 559, 1213, 1814, 2022
EcoRV	GATATC	2 cut(s)	295, 2002
EcoT14I	CCWWGG	1 cut(s)	424
EcoT22I	ATGCAT	4 cut(s)	986, 3070, 3286, 3297
EcoT38I	GRGCYC	4 cut(s)	201, 2384, 2980, 3420
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	2 cut(s)	379, 4240
FaqI	GGGAC	1 cut(s)	38
FauI	CCCGC	1 cut(s)	1518
FauNDI	CATATG	2 cut(s)	152, 3460
FblI	GTMKAC	1 cut(s)	4024
FriOI	GRGCYC	4 cut(s)	201, 2384, 2980, 3420
FspBI	CTAG	4 cut(s)	1829, 2093, 2445, 3528
FspI	TGCGCA	1 cut(s)	1241
GlaI	GCGC	7 cut(s)	91, 112, 255, 330, 1241, 2552, 4313
GsuI	CTGGAG	1 cut(s)	373
HaeII	RGCGCY	3 cut(s)	257, 2554, 4315
HaeIII	GGCC	4 cut(s)	477, 2463, 4140, 4188
HapII	CCGG	4 cut(s)	342, 1175, 1461, 4154
HgaI	GACGC	2 cut(s)	460, 3113
HhaI	GCGC	7 cut(s)	92, 113, 256, 331, 1242, 2553, 4314
Hin1I	GRCGYC	2 cut(s)	452, 3124
Hin6I	GCGC	7 cut(s)	90, 111, 254, 329, 1240, 2551, 4312
HinP1I	GCGC	7 cut(s)	90, 111, 254, 329, 1240, 2551, 4312
HincII	GTYRAC	3 cut(s)	1036, 3891, 4255
HindII	GTYRAC	3 cut(s)	1036, 3891, 4255
HindIII	AAGCTT	3 cut(s)	1567, 2309, 2776
HpaII	CCGG	4 cut(s)	342, 1175, 1461, 4154
HphI	GGTGA	4 cut(s)	325, 1601, 1707, 3918
Hpy166II	GTNNAC	7 cut(s)	1036, 3039, 3891, 3926, 4025, 4255, 4429
Hpy8I	GTNNAC	7 cut(s)	1036, 3039, 3891, 3926, 4025, 4255, 4429
Hpy99I	CGWCG	4 cut(s)	341, 454, 488, 3153
HpyAV	CCTTC	6 cut(s)	66, 1133, 1738, 2229, 3199, 3223
HpyCH4IV	ACGT	6 cut(s)	685, 861, 1198, 1641, 1735, 3148
HpyF3I	CTNAG	9 cut(s)	847, 1625, 2084, 2489, 2522, 2667, 2763, 2784, 4445
HpySE526I	ACGT	6 cut(s)	685, 861, 1198, 1641, 1735, 3148
Hsp92I	GRCGYC	2 cut(s)	452, 3124
HspAI	GCGC	7 cut(s)	90, 111, 254, 329, 1240, 2551, 4312
LguI	GCTCTTC	1 cut(s)	3501
LmnI	GCTCC	6 cut(s)	306, 532, 752, 1911, 2983, 4394
MaeI	CTAG	4 cut(s)	1829, 2093, 2445, 3528
MaeII	ACGT	6 cut(s)	685, 861, 1198, 1641, 1735, 3148
MaeIII	GTNAC	6 cut(s)	681, 2265, 2321, 3374, 3816, 4349
MbiI	CCGCTC	2 cut(s)	1525, 3238
MfeI	CAATTG	4 cut(s)	1652, 2235, 3383, 3537
MflI	RGATCY	4 cut(s)	694, 1795, 2503, 3046
MhlI	GDGCHC	6 cut(s)	201, 2384, 2980, 3025, 3397, 3420
MlsI	TGGCCA	1 cut(s)	4140
MluNI	TGGCCA	1 cut(s)	4140
MlyI	GAGTC	7 cut(s)	354, 512, 1286, 2066, 2972, 4293, 4424
MmeI	TCCRAC	6 cut(s)	764, 996, 1233, 1557, 3560, 4438
Mox20I	TGGCCA	1 cut(s)	4140
Mph1103I	ATGCAT	4 cut(s)	986, 3070, 3286, 3297
MroXI	GAANNNNTTC	5 cut(s)	1486, 1728, 1765, 2721, 4047
MscI	TGGCCA	1 cut(s)	4140
MslI	CAYNNNNRTG	8 cut(s)	34, 423, 672, 879, 1029, 1227, 2564, 3823
Msp20I	TGGCCA	1 cut(s)	4140
MspA1I	CMGCKG	1 cut(s)	2501
MspCI	CTTAAG	1 cut(s)	3757
MspI	CCGG	4 cut(s)	342, 1175, 1461, 4154
MspR9I	CCNGG	6 cut(s)	304, 531, 561, 1215, 1816, 2024
MunI	CAATTG	4 cut(s)	1652, 2235, 3383, 3537
Mva1269I	GAATGC	1 cut(s)	1218
MvaI	CCWGG	6 cut(s)	304, 531, 561, 1215, 1816, 2024
NcoI	CCATGG	1 cut(s)	424
NdeI	CATATG	2 cut(s)	152, 3460
NheI	GCTAGC	1 cut(s)	2444
NmuCI	GTSAC	3 cut(s)	2321, 3816, 4349
NsbI	TGCGCA	1 cut(s)	1241
NsiI	ATGCAT	4 cut(s)	986, 3070, 3286, 3297
NspI	RCATGY	4 cut(s)	2907, 3029, 3331, 3662
OliI	CACNNNNGTG	1 cut(s)	2564
PaeR7I	CTCGAG	3 cut(s)	194, 1892, 3983
PagI	TCATGA	3 cut(s)	1012, 2713, 4260
PciI	ACATGT	3 cut(s)	3025, 3327, 3658
PciSI	GCTCTTC	1 cut(s)	3501
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 2820
PctI	GAATGC	1 cut(s)	1218
PdmI	GAANNNNTTC	5 cut(s)	1486, 1728, 1765, 2721, 4047
PflFI	GACNNNGTC	1 cut(s)	1276
PflMI	CCANNNNNTGG	3 cut(s)	1571, 1654, 2807
PfoI	TCCNGGA	2 cut(s)	302, 559
PinAI	ACCGGT	1 cut(s)	1174
PleI	GAGTC	7 cut(s)	353, 512, 1285, 2065, 2971, 4292, 4424
PpsI	GAGTC	7 cut(s)	353, 512, 1285, 2065, 2971, 4292, 4424
Ppu21I	YACGTR	3 cut(s)	686, 862, 1199
PpuMI	RGGWCCY	2 cut(s)	7, 2692
PscI	ACATGT	3 cut(s)	3025, 3327, 3658
PsiI	TTATAA	2 cut(s)	1260, 3131
Psp124BI	GAGCTC	2 cut(s)	201, 2980
Psp1406I	AACGTT	1 cut(s)	1641
Psp5II	RGGWCCY	2 cut(s)	7, 2692
Psp6I	CCWGG	6 cut(s)	302, 529, 559, 1213, 1814, 2022
PspGI	CCWGG	6 cut(s)	302, 529, 559, 1213, 1814, 2022
PspPI	GGNCC	8 cut(s)	7, 428, 737, 1272, 2020, 2451, 2461, 2692
PspPPI	RGGWCCY	2 cut(s)	7, 2692
PspXI	VCTCGAGB	1 cut(s)	194
PstNI	CAGNNNCTG	3 cut(s)	755, 1670, 2834
PsuI	RGATCY	4 cut(s)	694, 1795, 2503, 3046
PsyI	GACNNNGTC	1 cut(s)	1276
RsaI	GTAC	7 cut(s)	824, 1956, 3110, 3332, 3936, 4057, 4223
RsaNI	GTAC	7 cut(s)	823, 1955, 3109, 3331, 3935, 4056, 4222
RseI	CAYNNNNRTG	8 cut(s)	34, 423, 672, 879, 1029, 1227, 2564, 3823
Rsr2I	CGGWCCG	1 cut(s)	737
RsrII	CGGWCCG	1 cut(s)	737
SacI	GAGCTC	2 cut(s)	201, 2980
SapI	GCTCTTC	1 cut(s)	3501
Sau96I	GGNCC	8 cut(s)	7, 428, 737, 1272, 2020, 2451, 2461, 2692
SchI	GAGTC	7 cut(s)	354, 512, 1286, 2066, 2972, 4293, 4424
ScrFI	CCNGG	6 cut(s)	304, 531, 561, 1215, 1816, 2024
SduI	GDGCHC	6 cut(s)	201, 2384, 2980, 3025, 3397, 3420
SfcI	CTRYAG	1 cut(s)	2613
Sfr274I	CTCGAG	3 cut(s)	194, 1892, 3983
SinI	GGWCC	7 cut(s)	7, 428, 737, 1272, 2020, 2451, 2692
SlaI	CTCGAG	3 cut(s)	194, 1892, 3983
SmiMI	CAYNNNNRTG	8 cut(s)	34, 423, 672, 879, 1029, 1227, 2564, 3823
SmlI	CTYRAG	9 cut(s)	194, 1892, 2034, 2927, 3482, 3757, 3983, 4217, 4328
SmoI	CTYRAG	9 cut(s)	194, 1892, 2034, 2927, 3482, 3757, 3983, 4217, 4328
SnaBI	TACGTA	2 cut(s)	862, 1199
SsiI	CCGC	9 cut(s)	66, 72, 78, 443, 446, 478, 1525, 2501, 3238
SspI	AATATT	1 cut(s)	1371
SspMI	CTAG	4 cut(s)	1829, 2093, 2445, 3528
SstI	GAGCTC	2 cut(s)	201, 2980
StyD4I	CCNGG	6 cut(s)	302, 529, 559, 1213, 1814, 2022
StyI	CCWWGG	1 cut(s)	424
TaiI	ACGT	6 cut(s)	688, 864, 1201, 1644, 1738, 3151
TaqII	GACCGA	3 cut(s)	218, 1289, 4014
TatI	WGTACW	4 cut(s)	822, 3108, 3934, 4221
TauI	GCSGC	4 cut(s)	68, 446, 449, 480
TscAI	CASTG	9 cut(s)	36, 529, 832, 1274, 1471, 2070, 2864, 2956, 3402
TseFI	GTSAC	3 cut(s)	2321, 3816, 4349
Tsp45I	GTSAC	3 cut(s)	2321, 3816, 4349
TspGWI	ACGGA	3 cut(s)	686, 3975, 4407
TspRI	CASTG	9 cut(s)	36, 529, 832, 1274, 1471, 2070, 2864, 2956, 3402
Tth111I	GACNNNGTC	1 cut(s)	1276
Van91I	CCANNNNNTGG	3 cut(s)	1571, 1654, 2807
Vha464I	CTTAAG	1 cut(s)	3757
VpaK11BI	GGWCC	7 cut(s)	7, 428, 737, 1272, 2020, 2451, 2692
XagI	CCTNNNNNAGG	1 cut(s)	2666
XapI	RAATTY	7 cut(s)	832, 1387, 1843, 1853, 1898, 2438, 4342
XceI	RCATGY	4 cut(s)	2907, 3029, 3331, 3662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4284
XhoI	CTCGAG	3 cut(s)	194, 1892, 3983
XmiI	GTMKAC	1 cut(s)	4024
XmnI	GAANNNNTTC	5 cut(s)	1486, 1728, 1765, 2721, 4047
XspI	CTAG	4 cut(s)	1829, 2093, 2445, 3528
Zsp2I	ATGCAT	4 cut(s)	986, 3070, 3286, 3297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.