Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

67776742 .. 67780807

Gene Structure 4066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGACCAGTTTGCAAATCCCTCCCTGCCTGATATTTGCTTTATAACTGAAACATCTCTGAAAGGGTACAAGCAATTGTGGCGAGCACTGAAGGAGATACTGAATGGGCTCTCTGCTGCTATCAACGCACTTCATCTTGTTCATCCAGCATATGCTTGGATTGATCCTCTCCTTGAGAGAAATGCTAATCACAATGAGCAGTATCCAAGTAAAAAGGCTAGAATAACAATTGAAGACCAGCCAGCAAGCAATGATGTTGATCCTCAAAGTTGGAAATCTTATATAGATATTCAGAAAATTGAAAACGAGTTTGAGCTTACTTCAGCAGAATATTTGCTTTCACTGGCACACGTCAAATGGACAAATACAGAATTTTTGGGTGTGACAACTCTAGCTGGAGAACAAGAGGATGATGGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

140

Amino Acids

15.9

Weight (kDa)

4.68

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AclWI	GGATC	2 cut(s)	158, 254
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	2 cut(s)	110, 306
AfaI	GTAC	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	233, 302
AjiI	CACGTC	1 cut(s)	352
AluBI	AGCT	2 cut(s)	316, 395
AluI	AGCT	2 cut(s)	316, 395
Alw21I	GWGCWC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	158, 254
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	407
BciVI	GTATCC	1 cut(s)	213
BfaI	CTAG	2 cut(s)	219, 392
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	258
Bse1I	ACTGG	2 cut(s)	7, 348
Bse3DI	GCAATG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	258
BseGI	GGATG	2 cut(s)	142, 415
BseJI	GATNNNNATC	1 cut(s)	258
BseMI	GCAATG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	7, 348
BseXI	GCAGC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	88, 111
Bsp143I	GATC	2 cut(s)	163, 259
BspPI	GGATC	2 cut(s)	158, 254
BsrDI	GCAATG	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	7, 348
BssMI	GATC	2 cut(s)	163, 259
Bst4CI	ACNGT	1 cut(s)	420
BstC8I	GCNNGC	3 cut(s)	84, 243, 247
BstF5I	GGATG	2 cut(s)	142, 415
BstKTI	GATC	2 cut(s)	166, 262
BstMBI	GATC	2 cut(s)	163, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 125
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	213
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	142, 415
BtsIMutI	CAGTG	2 cut(s)	86, 341
Cac8I	GCNNGC	3 cut(s)	84, 243, 247
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	67
CviJI	RGCY	5 cut(s)	109, 218, 241, 316, 395
CviKI_1	RGCY	5 cut(s)	109, 218, 241, 316, 395
CviQI	GTAC	1 cut(s)	67
DpnI	GATC	2 cut(s)	165, 261
DpnII	GATC	2 cut(s)	163, 259
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	110, 306
EcoT38I	GRGCYC	1 cut(s)	111
FaiI	YATR	5 cut(s)	44, 151, 153, 282, 284
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	129
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	219, 392
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	417
Hpy188I	TCNGA	2 cut(s)	60, 294
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 125
HpySE526I	ACGT	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	163, 259
LpnPI	CCDG	8 cut(s)	20, 38, 42, 159, 251, 255, 329, 381
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	219, 392
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	2 cut(s)	165, 261
MboI	GATC	2 cut(s)	163, 259
MboII	GAAGA	1 cut(s)	245
MfeI	CAATTG	2 cut(s)	74, 228
MhlI	GDGCHC	2 cut(s)	88, 111
MluCI	AATT	4 cut(s)	74, 228, 297, 371
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	4 cut(s)	31, 177, 273, 400
MunI	CAATTG	2 cut(s)	74, 228
MwoI	GCNNNNNNNGC	2 cut(s)	79, 125
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	2 cut(s)	163, 259
NmuCI	GTSAC	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	163, 259
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	2 cut(s)	88, 111
SetI	ASST	3 cut(s)	318, 354, 397
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	74, 228, 297, 371
SspI	AATATT	1 cut(s)	332
SspMI	CTAG	2 cut(s)	219, 392
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	354
TasI	AATT	4 cut(s)	74, 228, 297, 371
TscAI	CASTG	2 cut(s)	93, 348
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	122, 131
TspRI	CASTG	2 cut(s)	93, 348
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
XspI	CTAG	2 cut(s)	219, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.