Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

46282547 .. 46298362

Gene Structure 15816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG322500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4467 bp

ATGGAAGTGCCAATCCTCGGCAGCGATTCACTGAAATGGATTGAGTTCCCTATTCCTTCTTCTAATGCCGCCACCGCCGATGCTGATACTTGTGCCCCTCTCACTGACGATTGCGCTTCTTCCATCGCCATTGGCGACCCTCCTACACATCTCATATGGAGAATCCACAAGCATCTCCCTCACTCTCTCGAATTACTTGAGCTCTCTGCTAACAAAGAATTTCCAAAACTCGGACTGCGAATCACTTTTCCACAAGCACTCTCTTCCTCCGTTTTTCTTTGCAAAAATGAGATTGATGTCGGTTCCAGGAGCCACCCCTATTTGCTCTATGCATTGACCGTCGCCGGAGTCGCTTACCTTTTGAGACTTGGAACCGTCTCTAGTTATGCTTCCAACTCTGTTATTAGAGAGTTTAGCTTGCATCCCTACGGACCTATAACCAGTGCCGCAGCAATGCCAACTGGATGTCTTGTTGTAGGTCGGAATGACGGCTCACTTGCTTGCTTTCAACTCACACTTGAATCCACTGCTCCTGGTTTTCTGCAAGAGCTACGGGATGATCCAGGAATCGGTAGTTTGTGGGGTTTCATGTCAAGGGGTAGGATGGTAGGCGCTGTGCAGGACTTGGCTATATCTATGGTTCATGGGAAACCACTTATATTCGTTATTCATACGGACGGGGTGTTACGAGTATGGGATATATCATTTCATAGCAGGCTCTTTTCCCATAAGATGAACAGTCTAACAATGGCAGGAGCTGCATTGGTAAGGTTGTGGGTTGGTCAAGCTGACAATGATTCGAGCATAATTCCTTTGGCAATCTTGTACAGACATGATTCGGAAATGAGCTCAGAGACGATCTACGTATATAGCCTCCATTGTAACGTGGGAGACAGAATTGTTTTATCGATGGATCCTTCAGAACAAATTATTCCTATTGAGGAGGATGGATGGATTGATGTCAAACTTATTTCCAGCAAGATATGCATATTGAAAAATCAGGGACTGGTGCTTCACAAGTTGTTGCATACAAATGTCAACATGGTAGATGCAGTTTGTTATGCTTTGCAAGAGGACTTCGTTGCAGATCAACTCTTTCAAAGTTCTGAACATTCTTCGGATGACCTTCTTTTGATAACTCATTCAATATTTTCATCTTCAAAGGATCATATTCTACCCGTTGTATCTTCTATTTTCTTACGTAGGCTGCTTCTTCCTGGCATTCATCATAATGCTGCTTTGCGCACAACTTTGTTGGATTATAATAGGCACTGGACTGAGTCAGATTTCCACTCCTTAACTGCTGACGGGTTGAAGAAGGAAATTCTTTCCCTGATTGAACATGAGGGTCTGACTGGTAATTCATCGTCAATATTTTGCTGCTGGAAAATTTTTTGTGCTCGCTATTTCCAGAACTGGTGCAAGAGCAATGCACCATGTGGCCTGCTTGTTGATTCCTCAACCGGCACTGTTGGTTTAATTAGAAAGAGTTCAGTATCACTTTTTCGTTCTTTGGAAGATATTGAGCGGGTTAATGATGGCTCTTTGGATGAACTTGGCAATTTTCCAAGCTTTGGGTTGGATTCATTTGATGAGGCTCTTGATTGTGAGCTACTTGCTGAAATGCTCAGATGTGTCATTAACGTCAGCCAGCAATTGGGCAAAACAGCTTCTGCTATATTTTATGAATCACTCATTAGTGCACCACCAGTTATCTCATCTGAAGACATTATTCCGCGCCTATTGAAGATATTAGAAACTGGATATAGTTCAACAGCCGCAGTGCTTCATATATCAGATCTTGGACCTGATGTTGCCTGGGAGAAAAATCTAGCAGATCACAAAAATTTGAGGAAATTTTCAATTGACATGATGTTGTCTCTTCATGCTTTGCACGAGAAATCTGGCACATGGAGCCGTATTTTGAGTGTGATTGAGAACTATCTAAAGTATCTCATACCTCGGAAAATTATACAAAAATTTGATGCTGTAGTAGCATTGGATATCAATGCCTCCATCTTGGTCCAGGCTATGTCTCAAGTTGCAAAGGTTATGTTTGAGTCTGCACTGGATATTCATCTGTTTCTAAGCTATCTAGTAAGCATTAGTGGGCAGATCAATATGCTACATGATGATATATCCAAAATACAGCTTGAGTTGGTTCCGATGATTCAAGAAATCATTTATGAGTGGCTTCTCTTACATTTCTTTGCCACCACACCATCTGAATCAGCTGCAATTGAAGATTTCAGCTCTCAACTTTCATTGTTACAAATTGATAGCAACACAGGCAGAAGATCATGGAATGAGAAGCTTGGGAAGTGCGAGTTCACTCTGGCTTTTATATTCTTACTTAATGTTAGAAGTTCCTCCAAAGACCAGAGCCACTTTTGTTCAAGAAGCATACCAAACGTTCAGGACATAATTGATTCAATACGAGAATTTGCTAGCTGGATCATGTGGGGCCAGAATGGGGAATCCCTTACTGTCCTGAGTCGTGCAGCGGATCTTGCATTGATCCTGCTAAGGCACGGGCAGTATGATGCTGTTGAGCACCTACTCACTATTGTGGAGGCACATTTACAAAAGGAGAAGACTTCTCATTGTATTCAAGCTCCAGATGGTGGCTGGTGCATACTGCATCATCTTTTAGGATGCTGTTTCCTTGCTCAAGCACATCGTGGATTACATGGGGTCCTGAAAGAGAGGAAAGTTCAAGAAGCTGTATGTTGTTTCTTCAGAGCTGCATCTGGAAACGGCTCAGCTCAGGCTTTACAAAGCTTGCCTCAGGAAGCGGGGTTGCCACATCTTGGTATCGATGGTAGCGTATCAGATGCTGCATGGAGGCTGCATTACTATCAGTGGGCAATGCAGATATTTGAGCAATATAATATTAGTGAAGGTGCATGTCAGTTTGCTCTTGCTGCGCTTGAGCAAGTTGAGGAAGCGTATAGTGCAAACAATGAGTCCAGAGCTCCATTTGATGAATCAGTATCTACCATTAAAGGAAGACTTTGGGCACATGTTTGCAAGTTTACTTTAGATCTCAATCTCTTTTATGATGCGTACTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAGCACATCTGGTTGAGGCGTCTTATAATTGTTCTTTATGAACGTGGTGCCATAAAGATTCTTTGTGGTGGTCAGCTACCATTCATTGGTCTTACAGAGAAGGTAGAACAAGAGCTTGCATGGAAGGCAGAGCGGTCAGACATTTTAGCAAAGCCAAACTTATATAAGTTGCTTTATGCATTTGAAATGCATCGGCATAACTGGCGAAAAGCAGCAAGCTACATGTACCTTTATTCTGCTCGTTTGAGAACTGAAACATCTCTGAAAGGGTACCAGCAATTGTGGCGAGCACTGAAGGAGATACTGAATGGGCTGTCTGCTGCTATTAACGCACTTCATCTTGTTCATCCAACATATGCTTGGATTGATCCTCTCCTTGAGAGAAATGCTATTCACAATGAGCAGTATCCAAGTAAAAAGGCTAGAATAACAATTGAAGACCAGCCAGCAAGCAATGATGTTGATCCTCAAAGTTGGAAATCTTATATAGATATTCAGAAAATTGAAAACGAGTTTGTGCTTACTTCAGCAGAATATTTGCTTTCACTGGCACATGTCAAATGGACAAATACAGGAACCCAGAAAGCACCATTGGAGTTGGTTGATCTCTTGATCCAGACAAATCTATATGATATGGCATTTACAGTTCTCTTAAGATTCTTCAAAGGTTCAGAGTTAAAGAGGGGATTGGAAAGAGTTTTCTCTGCTATGTCACTAAAATGCTGTCCGCATATAGTTAATTCTTCAAGGGTCGGGGATGATTCCACAACACAGGGTCTTCTGTTGACTTCTTCAAAGGATGAAGTGATCGTTCATGGTTCACCAGATACAAGTTCAGCAAATCAACAATCCAGTGGAATTAATCAATGGGGAACTCTCGAGCTCTATCTTGACCGATATAAAGTCTTCCATGCACGTCTACCATTTATTGTTGCTGAAACTCTTCTTCGTACGGATTCTCAAATCGAACTACCTCTTTGGTTGGTTAAATTATTCAAGGATGGCAGGAGGGAAAATACATTGGGGATGACTGGCCAAGAATCAAGTCCGGCATTATTATTTCAACTATATGTTGATAATGGTCGATATAGAGAAGCTACGAATCTGTTGCTTGAGTACATAGGTTCTTTAGCATCCATGAGACCAGCCAACATCATGAATCGTAAAAGACCATTTGGAGTTTGGTTTCCATATACAACAATTCAGCGCCTCTGGTGCCGACTTGAGGAAATGATAAATTCAGGTCACATGGTAGATCAATGTAAGCAGCTCAAGGATTTGCTACATGGAGCTTTGCTGAAACATCTCCAACTGGTAAAAGTGGACTCAGAAGATGCACTCGAGTCATTTCAGAAAATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

1488

Amino Acids

167.05

Weight (kDa)

5.91

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	51 - 509	3.1e-55	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	526 - 720	1.7e-90	NUP160, helical domain
TPR_NUP160_120_M	PF23354	899 - 1148	5.3e-35	NUP160/120 middle TPR
HEAT_Nup120	PF23300	900 - 1047	2.6e-12	Nucleoporin Nup120, HEAT repeats
TPR_Nup160_C	PF23347	1200 - 1480	2.8e-12	Nup160 C-terminal TPR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1263, 3128
Acc16I	TGCGCA	1 cut(s)	1244
Acc65I	GGTACC	1 cut(s)	3372
AccB1I	GGYRCC	3 cut(s)	3149, 3372, 4317
AccB7I	CCANNNNNTGG	5 cut(s)	1574, 1657, 2624, 2810, 3188
AccBSI	CCGCTC	2 cut(s)	1528, 3235
AccI	GTMKAC	1 cut(s)	4021
AccII	CGCG	1 cut(s)	1738
AclI	AACGTT	1 cut(s)	2412
AcoI	YGGCCR	1 cut(s)	4135
AcsI	RAATTY	8 cut(s)	218, 1323, 1389, 1846, 1856, 1979, 2441, 4339
AcuI	CTGAAG	5 cut(s)	903, 1743, 2722, 3416, 3612
AcyI	GRCGYC	1 cut(s)	3121
AdeI	CACNNNGTG	2 cut(s)	1439, 2681
AfaI	GTAC	6 cut(s)	827, 3068, 3329, 3374, 4054, 4220
AflII	CTTAAG	1 cut(s)	3754
AflIII	ACRYGT	3 cut(s)	3022, 3324, 3655
AjiI	CACGTC	1 cut(s)	4019
AjnI	CCWGG	6 cut(s)	305, 532, 562, 1216, 1817, 2025
AjuI	GAANNNNNNNTTGG	2 cut(s)	3677, 3709
AleI	CACNNNNGTG	1 cut(s)	2567
Alw21I	GWGCWC	8 cut(s)	204, 851, 1402, 1705, 2556, 2977, 3394, 3987
Alw26I	GTCTC	7 cut(s)	358, 382, 848, 885, 1884, 2040, 4237
Alw44I	GTGCAC	1 cut(s)	1701
AlwNI	CAGNNNCTG	4 cut(s)	758, 1006, 1673, 2837
Ama87I	CYCGRG	2 cut(s)	3980, 4442
AoxI	GGCC	3 cut(s)	1441, 2464, 4135
ApaLI	GTGCAC	1 cut(s)	1701
ApoI	RAATTY	8 cut(s)	218, 1323, 1389, 1846, 1856, 1979, 2441, 4339
ArsI	GACNNNNNNTTYG	2 cut(s)	2951, 2983
AseI	ATTAAT	1 cut(s)	3963
Asp700I	GAANNNNTTC	2 cut(s)	1489, 4044
Asp718I	GGTACC	1 cut(s)	3372
AspLEI	GCGC	6 cut(s)	116, 614, 1245, 1740, 2929, 4311
AspS9I	GGNCC	5 cut(s)	431, 1805, 2023, 2464, 2695
AsuHPI	GGTGA	1 cut(s)	3915
AsuNHI	GCTAGC	1 cut(s)	2447
AvaI	CYCGRG	2 cut(s)	3980, 4442
AvaII	GGWCC	4 cut(s)	431, 1805, 2023, 2695
AxyI	CCTNAGG	1 cut(s)	2787
BaeGI	GKGCMC	3 cut(s)	97, 1705, 3022
BalI	TGGCCA	1 cut(s)	4137
BamHI	GGATCC	1 cut(s)	913
BanI	GGYRCC	3 cut(s)	3149, 3372, 4317
BanII	GRGCYC	4 cut(s)	204, 851, 2977, 3987
BauI	CACGAG	1 cut(s)	1895
BbsI	GAAGAC	6 cut(s)	1731, 2600, 3016, 3546, 3872, 4000
Bbv12I	GWGCWC	8 cut(s)	204, 851, 1402, 1705, 2556, 2977, 3394, 3987
BceAI	ACGGC	3 cut(s)	505, 1902, 2773
BcgI	CGANNNNNNTGC	2 cut(s)	4192, 4226
BciT130I	CCWGG	6 cut(s)	307, 534, 564, 1218, 1819, 2027
BciVI	GTATCC	1 cut(s)	3519
BcoDI	GTCTC	7 cut(s)	358, 382, 848, 885, 1884, 2040, 4237
BfaI	CTAG	5 cut(s)	381, 1832, 2096, 2448, 3525
BfmI	CTRYAG	1 cut(s)	1989
BfoI	RGCGCY	2 cut(s)	615, 4312
BfrI	CTTAAG	1 cut(s)	3754
BfuI	GTATCC	1 cut(s)	3519
BglII	AGATCT	2 cut(s)	1798, 3043
BlpI	GCTNAGC	1 cut(s)	2761
Bme1390I	CCNGG	6 cut(s)	307, 534, 564, 1218, 1819, 2027
Bme18I	GGWCC	4 cut(s)	431, 1805, 2023, 2695
BmeT110I	CYCGRG	2 cut(s)	3980, 4442
BmgBI	CACGTC	1 cut(s)	4019
BmgT120I	GGNCC	5 cut(s)	431, 1805, 2023, 2464, 2695
BmrFI	CCNGG	6 cut(s)	307, 534, 564, 1218, 1819, 2027
BmtI	GCTAGC	1 cut(s)	2451
BpiI	GAAGAC	6 cut(s)	1731, 2600, 3016, 3546, 3872, 4000
BpmI	CTGGAG	1 cut(s)	2601
Bpu10I	CCTNAGC	2 cut(s)	2525, 2766
Bpu1102I	GCTNAGC	1 cut(s)	2761
BpuEI	CTTGAG	9 cut(s)	218, 2022, 2174, 2655, 2951, 3500, 4235, 4346, 4358
Bsa29I	ATCGAT	2 cut(s)	908, 2817
BsaAI	YACGTR	2 cut(s)	865, 1202
BsaBI	GATNNNNATC	3 cut(s)	2076, 3048, 3564
BsaHI	GRCGYC	1 cut(s)	3121
BsaI	GGTCTC	1 cut(s)	4237
BsaJI	CCNNGG	3 cut(s)	16, 1818, 1961
Bse118I	RCCGGY	1 cut(s)	1463
Bse21I	CCTNAGG	1 cut(s)	2787
Bse3DI	GCAATG	4 cut(s)	459, 1435, 2874, 3562
Bse8I	GATNNNNATC	3 cut(s)	2076, 3048, 3564
BseBI	CCWGG	6 cut(s)	307, 534, 564, 1218, 1819, 2027
BseCI	ATCGAT	2 cut(s)	908, 2817
BseDI	CCNNGG	3 cut(s)	16, 1818, 1961
BseJI	GATNNNNATC	3 cut(s)	2076, 3048, 3564
BseMI	GCAATG	4 cut(s)	459, 1435, 2874, 3562
BseMII	CTCAG	8 cut(s)	864, 1269, 1642, 2483, 2775, 2780, 2801, 4443
BseRI	GAGGAG	2 cut(s)	956, 3110
BseSI	GKGCMC	3 cut(s)	97, 1705, 3022
BsgI	GTGCAG	3 cut(s)	638, 2049, 2520
Bsh1236I	CGCG	1 cut(s)	1738
BshFI	GGCC	3 cut(s)	1443, 2466, 4137
BshNI	GGYRCC	3 cut(s)	3149, 3372, 4317
BshVI	ATCGAT	2 cut(s)	908, 2817
BsiHKAI	GWGCWC	8 cut(s)	204, 851, 1402, 1705, 2556, 2977, 3394, 3987
BsiHKCI	CYCGRG	2 cut(s)	3980, 4442
BsiSI	CCGG	3 cut(s)	345, 1464, 4151
BsiWI	CGTACG	1 cut(s)	4052
BslFI	GGGAC	1 cut(s)	1017
BsmAI	GTCTC	7 cut(s)	358, 382, 848, 885, 1884, 2040, 4237
BsmBI	CGTCTC	2 cut(s)	382, 848
BsmFI	GGGAC	1 cut(s)	1017
BsmI	GAATGC	1 cut(s)	1221
BsnI	GGCC	3 cut(s)	1443, 2466, 4137
Bso31I	GGTCTC	1 cut(s)	4237
BsoBI	CYCGRG	2 cut(s)	3980, 4442
Bsp1407I	TGTACA	1 cut(s)	825
Bsp1720I	GCTNAGC	1 cut(s)	2761
BspANI	GGCC	3 cut(s)	1443, 2466, 4137
BspCNI	CTCAG	8 cut(s)	863, 1270, 1641, 2484, 2774, 2779, 2800, 4442
BspDI	ATCGAT	2 cut(s)	908, 2817
BspFNI	CGCG	1 cut(s)	1738
BspHI	TCATGA	1 cut(s)	4257
BspOI	GCTAGC	1 cut(s)	2451
BspT107I	GGYRCC	3 cut(s)	3149, 3372, 4317
BspTI	CTTAAG	1 cut(s)	3754
BspTNI	GGTCTC	1 cut(s)	4237
BsrBI	CCGCTC	2 cut(s)	1528, 3235
BsrDI	GCAATG	4 cut(s)	459, 1435, 2874, 3562
BsrFI	RCCGGY	1 cut(s)	1463
BsrGI	TGTACA	1 cut(s)	825
BssAI	RCCGGY	1 cut(s)	1463
BssECI	CCNNGG	3 cut(s)	16, 1818, 1961
BssNI	GRCGYC	1 cut(s)	3121
BssSI	CACGAG	1 cut(s)	1895
Bst2BI	CACGAG	1 cut(s)	1895
Bst2UI	CCWGG	6 cut(s)	307, 534, 564, 1218, 1819, 2027
Bst4CI	ACNGT	7 cut(s)	340, 376, 740, 1471, 2488, 3071, 3748
Bst6I	CTCTTC	3 cut(s)	268, 1887, 4050
BstACI	GRCGYC	1 cut(s)	3121
BstAFI	CTTAAG	1 cut(s)	3754
BstAPI	GCANNNNNTGC	2 cut(s)	758, 984
BstAUI	TGTACA	1 cut(s)	825
BstBAI	YACGTR	2 cut(s)	865, 1202
BstFNI	CGCG	1 cut(s)	1738
BstH2I	RGCGCY	2 cut(s)	615, 4312
BstHHI	GCGC	6 cut(s)	116, 614, 1245, 1740, 2929, 4311
BstMAI	GTCTC	7 cut(s)	358, 382, 848, 885, 1884, 2040, 4237
BstNI	CCWGG	6 cut(s)	307, 534, 564, 1218, 1819, 2027
BstNSI	RCATGY	4 cut(s)	2910, 3026, 3328, 3659
BstSCI	CCNGG	6 cut(s)	305, 532, 562, 1216, 1817, 2025
BstSFI	CTRYAG	1 cut(s)	1989
BstSLI	GKGCMC	3 cut(s)	97, 1705, 3022
BstSNI	TACGTA	2 cut(s)	865, 1202
BstUI	CGCG	1 cut(s)	1738
BstV2I	GAAGAC	6 cut(s)	1731, 2600, 3016, 3546, 3872, 4000
BstX2I	RGATCY	4 cut(s)	913, 1798, 2506, 3043
BstYI	RGATCY	4 cut(s)	913, 1798, 2506, 3043
Bsu15I	ATCGAT	2 cut(s)	908, 2817
Bsu36I	CCTNAGG	1 cut(s)	2787
BsuI	GTATCC	1 cut(s)	3519
BsuRI	GGCC	3 cut(s)	1443, 2466, 4137
BsuTUI	ATCGAT	2 cut(s)	908, 2817
BtgZI	GCGATG	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	4019
BtsI	GCAGTG	2 cut(s)	525, 1788
CaiI	CAGNNNCTG	4 cut(s)	758, 1006, 1673, 2837
CciI	TCATGA	1 cut(s)	4257
CfoI	GCGC	6 cut(s)	116, 614, 1245, 1740, 2929, 4311
Cfr10I	RCCGGY	1 cut(s)	1463
Cfr13I	GGNCC	5 cut(s)	431, 1805, 2023, 2464, 2695
ClaI	ATCGAT	2 cut(s)	908, 2817
CseI	GACGC	1 cut(s)	3110
Csp6I	GTAC	6 cut(s)	826, 3067, 3328, 3373, 4053, 4219
CviQI	GTAC	6 cut(s)	826, 3067, 3328, 3373, 4053, 4219
DraIII	CACNNNGTG	2 cut(s)	1439, 2681
EaeI	YGGCCR	1 cut(s)	4135
Eam1104I	CTCTTC	3 cut(s)	268, 1887, 4050
EarI	CTCTTC	3 cut(s)	268, 1887, 4050
Ecl136II	GAGCTC	4 cut(s)	202, 849, 2975, 3985
Eco105I	TACGTA	2 cut(s)	865, 1202
Eco24I	GRGCYC	4 cut(s)	204, 851, 2977, 3987
Eco31I	GGTCTC	1 cut(s)	4237
Eco32I	GATATC	1 cut(s)	2005
Eco47I	GGWCC	4 cut(s)	431, 1805, 2023, 2695
Eco53kI	GAGCTC	4 cut(s)	202, 849, 2975, 3985
Eco57I	CTGAAG	5 cut(s)	903, 1743, 2722, 3416, 3612
Eco81I	CCTNAGG	1 cut(s)	2787
Eco88I	CYCGRG	2 cut(s)	3980, 4442
EcoICRI	GAGCTC	4 cut(s)	202, 849, 2975, 3985
EcoO109I	RGGNCCY	1 cut(s)	2695
EcoRII	CCWGG	6 cut(s)	305, 532, 562, 1216, 1817, 2025
EcoRV	GATATC	1 cut(s)	2005
EcoT22I	ATGCAT	4 cut(s)	334, 989, 3283, 3294
EcoT38I	GRGCYC	4 cut(s)	204, 851, 2977, 3987
Esp3I	CGTCTC	2 cut(s)	382, 848
FalI	AAGNNNNNCTT	4 cut(s)	2997, 3029, 3245, 3277
FaqI	GGGAC	1 cut(s)	1017
FauI	CCCGC	2 cut(s)	1521, 2788
FauNDI	CATATG	2 cut(s)	155, 3457
FblI	GTMKAC	1 cut(s)	4021
FriOI	GRGCYC	4 cut(s)	204, 851, 2977, 3987
FspBI	CTAG	5 cut(s)	381, 1832, 2096, 2448, 3525
FspI	TGCGCA	1 cut(s)	1244
GlaI	GCGC	6 cut(s)	115, 613, 1244, 1739, 2928, 4310
GsuI	CTGGAG	1 cut(s)	2601
HaeII	RGCGCY	2 cut(s)	615, 4312
HaeIII	GGCC	3 cut(s)	1443, 2466, 4137
HapII	CCGG	3 cut(s)	345, 1464, 4151
HgaI	GACGC	1 cut(s)	3110
HhaI	GCGC	6 cut(s)	116, 614, 1245, 1740, 2929, 4311
Hin1I	GRCGYC	1 cut(s)	3121
Hin6I	GCGC	6 cut(s)	114, 612, 1243, 1738, 2927, 4309
HinP1I	GCGC	6 cut(s)	114, 612, 1243, 1738, 2927, 4309
HincII	GTYRAC	2 cut(s)	1039, 3888
HindII	GTYRAC	2 cut(s)	1039, 3888
HindIII	AAGCTT	3 cut(s)	1570, 2312, 2779
HpaII	CCGG	3 cut(s)	345, 1464, 4151
HphI	GGTGA	1 cut(s)	3915
Hpy166II	GTNNAC	8 cut(s)	1039, 1703, 2331, 3036, 3888, 3923, 4022, 4426
Hpy8I	GTNNAC	8 cut(s)	1039, 1703, 2331, 3036, 3888, 3923, 4022, 4426
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	8 cut(s)	66, 927, 1136, 1312, 2894, 3196, 3220, 3391
HpyCH4III	ACNGT	7 cut(s)	340, 376, 740, 1471, 2488, 3071, 3748
HpyCH4IV	ACGT	7 cut(s)	864, 885, 1201, 1644, 2412, 3145, 4018
HpySE526I	ACGT	7 cut(s)	864, 885, 1201, 1644, 2412, 3145, 4018
Hsp92I	GRCGYC	1 cut(s)	3121
HspAI	GCGC	6 cut(s)	114, 612, 1243, 1738, 2927, 4309
KpnI	GGTACC	1 cut(s)	3376
LmnI	GCTCC	7 cut(s)	309, 535, 755, 1914, 2620, 2980, 4391
MaeI	CTAG	5 cut(s)	381, 1832, 2096, 2448, 3525
MaeII	ACGT	7 cut(s)	864, 885, 1201, 1644, 2412, 3145, 4018
MaeIII	GTNAC	5 cut(s)	684, 881, 2268, 3813, 4346
MbiI	CCGCTC	2 cut(s)	1528, 3235
MfeI	CAATTG	5 cut(s)	1655, 1863, 2238, 3380, 3534
MflI	RGATCY	4 cut(s)	913, 1798, 2506, 3043
MlsI	TGGCCA	1 cut(s)	4137
MluNI	TGGCCA	1 cut(s)	4137
MlyI	GAGTC	7 cut(s)	357, 1289, 2069, 2503, 2975, 4421, 4454
MmeI	TCCRAC	7 cut(s)	417, 461, 1236, 1560, 3476, 3557, 4435
Mox20I	TGGCCA	1 cut(s)	4137
Mph1103I	ATGCAT	4 cut(s)	334, 989, 3283, 3294
MroXI	GAANNNNTTC	2 cut(s)	1489, 4044
MscI	TGGCCA	1 cut(s)	4137
MslI	CAYNNNNRTG	5 cut(s)	34, 1032, 1230, 2567, 3820
Msp20I	TGGCCA	1 cut(s)	4137
MspA1I	CMGCKG	2 cut(s)	2234, 2504
MspCI	CTTAAG	1 cut(s)	3754
MspI	CCGG	3 cut(s)	345, 1464, 4151
MspR9I	CCNGG	6 cut(s)	307, 534, 564, 1218, 1819, 2027
MunI	CAATTG	5 cut(s)	1655, 1863, 2238, 3380, 3534
Mva1269I	GAATGC	1 cut(s)	1221
MvaI	CCWGG	6 cut(s)	307, 534, 564, 1218, 1819, 2027
MvnI	CGCG	1 cut(s)	1738
NdeI	CATATG	2 cut(s)	155, 3457
NheI	GCTAGC	1 cut(s)	2447
NmuCI	GTSAC	2 cut(s)	3813, 4346
NsbI	TGCGCA	1 cut(s)	1244
NsiI	ATGCAT	4 cut(s)	334, 989, 3283, 3294
NspI	RCATGY	4 cut(s)	2910, 3026, 3328, 3659
OliI	CACNNNNGTG	1 cut(s)	2567
PaeR7I	CTCGAG	2 cut(s)	3980, 4442
PagI	TCATGA	1 cut(s)	4257
PciI	ACATGT	3 cut(s)	3022, 3324, 3655
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 2823
PctI	GAATGC	1 cut(s)	1221
PdmI	GAANNNNTTC	2 cut(s)	1489, 4044
Pfl23II	CGTACG	1 cut(s)	4052
PflFI	GACNNNGTC	1 cut(s)	1279
PflMI	CCANNNNNTGG	5 cut(s)	1574, 1657, 2624, 2810, 3188
PfoI	TCCNGGA	2 cut(s)	305, 562
PleI	GAGTC	7 cut(s)	356, 1288, 2068, 2502, 2974, 4421, 4453
PpsI	GAGTC	7 cut(s)	356, 1288, 2068, 2502, 2974, 4421, 4453
Ppu21I	YACGTR	2 cut(s)	865, 1202
PpuMI	RGGWCCY	1 cut(s)	2695
PscI	ACATGT	3 cut(s)	3022, 3324, 3655
PshBI	ATTAAT	1 cut(s)	3963
PsiI	TTATAA	2 cut(s)	1263, 3128
Psp124BI	GAGCTC	4 cut(s)	204, 851, 2977, 3987
Psp1406I	AACGTT	1 cut(s)	2412
Psp5II	RGGWCCY	1 cut(s)	2695
Psp6I	CCWGG	6 cut(s)	305, 532, 562, 1216, 1817, 2025
PspGI	CCWGG	6 cut(s)	305, 532, 562, 1216, 1817, 2025
PspLI	CGTACG	1 cut(s)	4052
PspPI	GGNCC	5 cut(s)	431, 1805, 2023, 2464, 2695
PspPPI	RGGWCCY	1 cut(s)	2695
PspXI	VCTCGAGB	1 cut(s)	4442
PstNI	CAGNNNCTG	4 cut(s)	758, 1006, 1673, 2837
PsuI	RGATCY	4 cut(s)	913, 1798, 2506, 3043
PsyI	GACNNNGTC	1 cut(s)	1279
PvuII	CAGCTG	1 cut(s)	2234
RsaI	GTAC	6 cut(s)	827, 3068, 3329, 3374, 4054, 4220
RsaNI	GTAC	6 cut(s)	826, 3067, 3328, 3373, 4053, 4219
RseI	CAYNNNNRTG	5 cut(s)	34, 1032, 1230, 2567, 3820
SacI	GAGCTC	4 cut(s)	204, 851, 2977, 3987
Sau96I	GGNCC	5 cut(s)	431, 1805, 2023, 2464, 2695
SchI	GAGTC	7 cut(s)	357, 1289, 2069, 2503, 2975, 4421, 4454
ScrFI	CCNGG	6 cut(s)	307, 534, 564, 1218, 1819, 2027
SfcI	CTRYAG	1 cut(s)	1989
Sfr274I	CTCGAG	2 cut(s)	3980, 4442
SinI	GGWCC	4 cut(s)	431, 1805, 2023, 2695
SlaI	CTCGAG	2 cut(s)	3980, 4442
SmiMI	CAYNNNNRTG	5 cut(s)	34, 1032, 1230, 2567, 3820
SnaBI	TACGTA	2 cut(s)	865, 1202
SspI	AATATT	4 cut(s)	1149, 1374, 2893, 3638
SspMI	CTAG	5 cut(s)	381, 1832, 2096, 2448, 3525
SstI	GAGCTC	4 cut(s)	204, 851, 2977, 3987
StyD4I	CCNGG	6 cut(s)	305, 532, 562, 1216, 1817, 2025
TaaI	ACNGT	7 cut(s)	340, 376, 740, 1471, 2488, 3071, 3748
TaiI	ACGT	7 cut(s)	867, 888, 1204, 1647, 2415, 3148, 4021
TaqI	TCGA	8 cut(s)	189, 800, 908, 2817, 3981, 4068, 4186, 4443
TaqII	GACCGA	1 cut(s)	4011
TatI	WGTACW	2 cut(s)	825, 4218
TauI	GCSGC	3 cut(s)	71, 449, 1781
TseFI	GTSAC	2 cut(s)	3813, 4346
Tsp45I	GTSAC	2 cut(s)	3813, 4346
TspGWI	ACGGA	4 cut(s)	259, 444, 689, 4070
Tth111I	GACNNNGTC	1 cut(s)	1279
Van91I	CCANNNNNTGG	5 cut(s)	1574, 1657, 2624, 2810, 3188
Vha464I	CTTAAG	1 cut(s)	3754
VneI	GTGCAC	1 cut(s)	1701
VpaK11BI	GGWCC	4 cut(s)	431, 1805, 2023, 2695
VspI	ATTAAT	1 cut(s)	3963
XapI	RAATTY	8 cut(s)	218, 1323, 1389, 1846, 1856, 1979, 2441, 4339
XceI	RCATGY	4 cut(s)	2910, 3026, 3328, 3659
XcmI	CCANNNNNNNNNTGG	3 cut(s)	2625, 3459, 4281
XhoI	CTCGAG	2 cut(s)	3980, 4442
XmiI	GTMKAC	1 cut(s)	4021
XmnI	GAANNNNTTC	2 cut(s)	1489, 4044
XspI	CTAG	5 cut(s)	381, 1832, 2096, 2448, 3525
Zsp2I	ATGCAT	4 cut(s)	334, 989, 3283, 3294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.