Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

17777644 .. 17778828

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1158600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATGAATGTATATTGTGCGGTTATTTCAAACCCAGATGAGGAGAGCAAGTACATCTGCTTGAGGCGTCTGATAAACGTTCTTTATGAACGTGGTGCCATAAATATATTTCAGATGCTTTGTGGTGGTCAGCTACCATTAATTGGTCTTACAGAGAAGGTCAAGCAAGCGCTTGCTAGAAAGGCAGATAGTTCAGATATTTTAAAGCCAAATCTATGTAAGTTGCTTTATGCGTTTGGAATGCATCGACATAACTGGAAAAGAGCACACACATCAATGGTACTGAAGGAGATTCTGAACGGGCTCTCTGCTGCCATCAATGCACTTCATCTGATACATCCTGCCTGTGCTTGGATTGGTCCTCTATTCGAGAGAAGTTCTCTTCACAATGAGCTGTATCCGAGTAAAATAGCTAAATTTAAAATAGACAGACAAGCTTCCAGCGACGATGGTTATCCTCAAACACGGAAATCTTATATTGATATTGAGAAACTTGAGGACGAGTTTGTGCTTACTTCAGCAGAATATTTGCTTTCACCGGCACATGTCAAATCTACACCTAGTGGAACCCAGAAAGCACCACTAGAGGTTGTTGATCTCCTTATCCAGACAAATTTATATGATTTGGCATTTACAGTCCTTTTAAGATTCTTTAAAGGTTCACAGTTAAAGAGGGGATTGGAAAGAGCTTTCTTTGCCACGGCACTGAAATGTTGTTCAAATGGAGTTGATTCTTCACTGGTTGGGGACGGTCACAGAGCACCAAATGCTCCGAATGAATATGTTAATTATGGTCGATACAGAGAAGCTAGGAATCTTTTGCTCGAGTACAAGATCATTTGCAAAGATGAGACGGCATTTGCAGTTTGGTGTCCCTACACATCAGTTGAGCTTCTTTGGTGCCAACTTGAGGAATGTATCAGTTCAGGGCACATGATATATCGATGTAACATGCTAAAAAATCTGCTACATGGAGCGTTGCTGAGCCAAAGAAGACTCAGAAGACGAAATGGTAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

341

Amino Acids

38.63

Weight (kDa)

9.1

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_NUP160_120_M	PF23354	4 - 93	2e-13	NUP160/120 middle TPR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	95, 900
AccB7I	CCANNNNNTGG	1 cut(s)	143
AciI	CCGC	1 cut(s)	20
AclI	AACGTT	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	416, 613
AcuI	CTGAAG	2 cut(s)	305, 501
AcyI	GRCGYC	1 cut(s)	67
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	3 cut(s)	53, 282, 830
AfeI	AGCGCT	1 cut(s)	171
AfiI	CCNNNNNNNGG	4 cut(s)	40, 143, 351, 910
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	2 cut(s)	30, 720
AluBI	AGCT	7 cut(s)	133, 394, 413, 437, 689, 809, 892
AluI	AGCT	7 cut(s)	133, 394, 413, 437, 689, 809, 892
Alw21I	GWGCWC	2 cut(s)	268, 763
Alw26I	GTCTC	1 cut(s)	845
Ama87I	CYCGRG	1 cut(s)	824
Aor51HI	AGCGCT	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	2 cut(s)	416, 613
AseI	ATTAAT	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	528
AvaI	CYCGRG	1 cut(s)	824
AvaII	GGWCC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	933
BanI	GGYRCC	2 cut(s)	95, 900
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	2 cut(s)	1000, 1009
Bbv12I	GWGCWC	2 cut(s)	268, 763
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	323, 443
BceAI	ACGGC	2 cut(s)	717, 870
BciVI	GTATCC	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	845
BfaI	CTAG	4 cut(s)	177, 561, 584, 810
BfoI	RGCGCY	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	983
BlsI	GCNGC	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	3 cut(s)	97, 568, 902
BmsI	GCATC	2 cut(s)	105, 253
BpiI	GAAGAC	2 cut(s)	1000, 1009
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
Bpu1102I	GCTNAGC	1 cut(s)	983
BpuEI	CTTGAG	3 cut(s)	82, 515, 929
Bsa29I	ATCGAT	1 cut(s)	943
BsaBI	GATNNNNATC	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	699
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 143, 351, 910
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	2 cut(s)	260, 744
Bse8I	GATNNNNATC	1 cut(s)	453
BseCI	ATCGAT	1 cut(s)	943
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	1 cut(s)	337
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	4 cut(s)	40, 143, 351, 910
BseMII	CTCAG	2 cut(s)	974, 1012
BseNI	ACTGG	2 cut(s)	260, 744
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	933
BseXI	GCAGC	1 cut(s)	298
BshNI	GGYRCC	2 cut(s)	95, 900
BshVI	ATCGAT	1 cut(s)	943
BsiHKAI	GWGCWC	2 cut(s)	268, 763
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	2 cut(s)	761, 858
BslI	CCNNNNNNNGG	4 cut(s)	40, 143, 351, 910
BsmAI	GTCTC	1 cut(s)	845
BsmBI	CGTCTC	1 cut(s)	845
BsmFI	GGGAC	2 cut(s)	761, 858
BsmI	GAATGC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	824
Bsp1286I	GDGCHC	4 cut(s)	268, 306, 763, 933
Bsp143I	GATC	2 cut(s)	595, 834
Bsp1720I	GCTNAGC	1 cut(s)	983
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	2 cut(s)	975, 1011
BspDI	ATCGAT	1 cut(s)	943
BspLI	GGNNCC	3 cut(s)	97, 568, 902
BspT107I	GGYRCC	2 cut(s)	95, 900
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	260, 744
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	2 cut(s)	595, 834
BssNI	GRCGYC	1 cut(s)	67
Bst4CI	ACNGT	3 cut(s)	637, 666, 752
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	2 cut(s)	168, 174
BstDEI	CTNAG	2 cut(s)	983, 998
BstDSI	CCRYGG	1 cut(s)	699
BstF5I	GGATG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	598, 837
BstMAI	GTCTC	1 cut(s)	845
BstMBI	GATC	2 cut(s)	595, 834
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 320, 695, 767
BstNSI	RCATGY	2 cut(s)	548, 955
BstSLI	GKGCMC	1 cut(s)	933
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	2 cut(s)	1000, 1009
Bsu15I	ATCGAT	1 cut(s)	943
BsuI	GTATCC	1 cut(s)	408
BsuTUI	ATCGAT	1 cut(s)	943
BtgI	CCRYGG	1 cut(s)	699
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	2 cut(s)	704, 737
Cac8I	GCNNGC	2 cut(s)	168, 174
CfoI	GCGC	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	359
ClaI	ATCGAT	1 cut(s)	943
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	3 cut(s)	52, 281, 829
CviAII	CATG	4 cut(s)	545, 934, 952, 971
CviQI	GTAC	3 cut(s)	52, 281, 829
DdeI	CTNAG	2 cut(s)	983, 998
DpnI	GATC	2 cut(s)	597, 836
DpnII	GATC	2 cut(s)	595, 834
DraI	TTTAAA	3 cut(s)	204, 421, 655
DraIII	CACNNNGTG	1 cut(s)	563
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	359
Eco47III	AGCGCT	1 cut(s)	171
Eco57I	CTGAAG	2 cut(s)	305, 501
Eco88I	CYCGRG	1 cut(s)	824
EcoT22I	ATGCAT	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	845
FaeI	CATG	4 cut(s)	548, 937, 955, 974
FaqI	GGGAC	2 cut(s)	761, 858
FatI	CATG	4 cut(s)	544, 933, 951, 970
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	324
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	4 cut(s)	177, 561, 584, 810
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	173
HapII	CCGG	1 cut(s)	539
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	4 cut(s)	548, 937, 955, 974
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	5 cut(s)	292, 648, 731, 814, 996
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	1 cut(s)	528
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	8 cut(s)	72, 114, 196, 297, 333, 402, 774, 1001
Hpy188III	TCNNGA	2 cut(s)	370, 607
Hpy8I	GTNNAC	1 cut(s)	662
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	2 cut(s)	151, 280
HpyCH4III	ACNGT	3 cut(s)	637, 666, 752
HpyCH4IV	ACGT	2 cut(s)	78, 91
HpyCH4V	TGCA	4 cut(s)	244, 323, 843, 863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 320, 695, 767
HpyF3I	CTNAG	2 cut(s)	983, 998
HpySE526I	ACGT	2 cut(s)	78, 91
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	548, 937, 955, 974
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	595, 834
LmnI	GCTCC	2 cut(s)	775, 974
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	105, 253
MaeI	CTAG	4 cut(s)	177, 561, 584, 810
MaeII	ACGT	2 cut(s)	78, 91
MaeIII	GTNAC	2 cut(s)	752, 947
MalI	GATC	2 cut(s)	597, 836
MboI	GATC	2 cut(s)	595, 834
MboII	GAAGA	4 cut(s)	374, 726, 1005, 1014
MhlI	GDGCHC	4 cut(s)	268, 306, 763, 933
MluCI	AATT	4 cut(s)	141, 416, 613, 787
MlyI	GAGTC	1 cut(s)	990
MnlI	CCTC	8 cut(s)	34, 57, 372, 468, 490, 580, 666, 904
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	7 cut(s)	140, 203, 420, 644, 654, 668, 786
MslI	CAYNNNNRTG	2 cut(s)	275, 709
MspI	CCGG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	4 cut(s)	182, 320, 695, 767
NdeII	GATC	2 cut(s)	595, 834
NlaIII	CATG	4 cut(s)	548, 937, 955, 974
NlaIV	GGNNCC	3 cut(s)	97, 568, 902
NmuCI	GTSAC	1 cut(s)	752
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	2 cut(s)	548, 955
PaeR7I	CTCGAG	1 cut(s)	824
PciI	ACATGT	1 cut(s)	544
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	4 cut(s)	292, 648, 731, 814
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	990
PpsI	GAGTC	1 cut(s)	990
PscI	ACATGT	1 cut(s)	544
PshBI	ATTAAT	1 cut(s)	140
Psp1406I	AACGTT	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	97, 568, 902
PspPI	GGNCC	1 cut(s)	359
PspXI	VCTCGAGB	1 cut(s)	824
RsaI	GTAC	3 cut(s)	53, 282, 830
RsaNI	GTAC	3 cut(s)	52, 281, 829
RseI	CAYNNNNRTG	2 cut(s)	275, 709
SaqAI	TTAA	7 cut(s)	140, 203, 420, 644, 654, 668, 786
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	595, 834
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	990
SduI	GDGCHC	4 cut(s)	268, 306, 763, 933
SfaNI	GCATC	2 cut(s)	105, 253
Sfr274I	CTCGAG	1 cut(s)	824
SinI	GGWCC	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	824
SmiMI	CAYNNNNRTG	2 cut(s)	275, 709
SmlI	CTYRAG	4 cut(s)	61, 494, 824, 908
SmoI	CTYRAG	4 cut(s)	61, 494, 824, 908
Sse9I	AATT	4 cut(s)	141, 416, 613, 787
SsiI	CCGC	1 cut(s)	20
SspI	AATATT	1 cut(s)	527
SspMI	CTAG	4 cut(s)	177, 561, 584, 810
TaaI	ACNGT	3 cut(s)	637, 666, 752
TaiI	ACGT	2 cut(s)	81, 94
TaqI	TCGA	5 cut(s)	247, 369, 796, 825, 943
TasI	AATT	4 cut(s)	141, 416, 613, 787
TatI	WGTACW	2 cut(s)	51, 828
TfiI	GAWTC	4 cut(s)	292, 648, 731, 814
Tru1I	TTAA	7 cut(s)	140, 203, 420, 644, 654, 668, 786
Tru9I	TTAA	7 cut(s)	140, 203, 420, 644, 654, 668, 786
TscAI	CASTG	2 cut(s)	711, 744
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	4 cut(s)	20, 102, 317, 792
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	2 cut(s)	711, 744
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	359
VspI	ATTAAT	1 cut(s)	140
XapI	RAATTY	2 cut(s)	416, 613
XceI	RCATGY	2 cut(s)	548, 955
XhoI	CTCGAG	1 cut(s)	824
XspI	CTAG	4 cut(s)	177, 561, 584, 810
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.