Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001405.1

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

218328 .. 226493

Gene Structure 8166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001405.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2490 bp

atgctcaggtgtgtcactaatgtcagccagcaattgggaaaaacagcttctgctatattttacgaatcactcattagtgcaccaccagttatctcatctaaagaaattattccacgcctattgaagatattagaaactggatatagttcaacagcagcagagcttcggatagcagatcttggaactgatcttgcctgggagaaaaatctagcagatcacaaaaatttgaggaaattttctattgacatgatgaagtctcttcatgctttgcacgagaaatctggcacatggagccgtattttaagtgtgattgagaagtatcttaagtatctcatacctcgaaaaattatacaaaaatttgatgctgaagtagcattggatattaatgcctccatcttggtctcggctacgtttcaagttgcaaaggttatgtttgagtctgcattggatattcatctgtttctaagctatctagtgagcattagcaggcagatcaatatgctacatgatgatatatccaaaatacaacttgagttggtgccaatgattcaagaagtcatttatgagtggcttctcctgcatttctttgccaccacaccatctgaatcagctgcaattgaagatttcagctctcaactttcattgttacaaattgatagcaacactggtagaagattatggaatgagaagcttgggaagtgcgagttcactctggcttttatattcttacttaatgttagaagttcctccaaagaccagaaccacttttctccaagaagcataccaagcgttgaggacataattgattcagtacgagagtttgatagctggatcatgtggggccaggatggggaatcccttactttcctgaagcgtgcagcggatcttgcattgatcctgctaaggcacgggcagtatgatgctgttgagcacttactcactattgtggaggcacatttagaaaaggaggagacttctcacggtattagagctacagatggtggatggtgcatacttcatcatcttttaggatgctgcttccttgctcaggcacatcgtggagtacatggggttctgaaagagaggaaagttcatgaagctattcgttatttcttcagagccgcatctggaaacgggtcatctcatgctttacaaagcttgcctcaggaagcgtggttgccacatcttggtatcgatggtagcgtatcagatgctgcatggaggctccattactatcagtgggcaatgcagatatgtgagcattataatattagtgaaggtgcatgtcagtttgctcttgctgcgcttgagcaagttgaggaagcttacagtgcaaataatgagtcccatgacagagctccatttaatgaatcagtatctaccatcaaaggaagactttgggcaaatgtttgcaaatttactttagatctcaatctctattatgatgcatattgtgcaatagtttcaaatccagatgaggagagcaagtacatctgcttgaggcgtcttataaatgttctttatgaacgtgattctatgtggtggtcagctaccattcattggtcttacagagaaggtagaacaagagcttgcatggaaggtataactaagcggtcagacattttagcaaagacaaacttatataagttgctttatgcatttgaaatgcatcggcataactggcgacaagcagcaagctacatgtacctttattctgcccgtttgagaactgaagcatctctgaaaggttaccaacaattgtggcgagtactgaaggagatacagaatgggctctctgctgctatcaacgcacttcatcttgttcatccagcatatgcttggattgatcctctgcttgcgagaagtgctcttcacaacgagcagtatccaggtagagaggctaggataacaattgaagaccagccagcaaacaatgatgttcatcctcgaagttggaaatcttttatagatattcagaaaattgagaacgagtttgtgcttacttcagcagaacatctgctttcactggcacatgtcaaatggacaaatacaggaacccagacagcaccattagagttggttgatcttttgatccagacaaatctatatgatatggcatttacagttcttgtaagattcttcaaaggttcagagttaaagagggatgatcccacaacacaaggtcttctgttgacttcgccaaaggatgatgtgatcgttcatggttcaccagatatgtcttcagcaaatcaacaatccaatggaataaatcaatggggaactctcgagctttatcttgatggcaggagggaaaagactttggggatgactggccacgaatcaaatccggcatcgttgtttcaattatatgttgattatggtcgatatggagaagctataaatctgttgcttgagcacaaagggtgttttggatccatggtaaagtccagcctttttctatcttatgtttctgaattcttgctcagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

829

Amino Acids

94.42

Weight (kDa)

6.13

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1266, 1511
AccB1I	GGYRCC	1 cut(s)	538
AccB7I	CCANNNNNTGG	3 cut(s)	34, 1187, 1560
AciI	CCGC	3 cut(s)	881, 1122, 1612
AclWI	GGATC	8 cut(s)	839, 889, 891, 1841, 2086, 2162, 2427, 2440
AcoI	YGGCCR	1 cut(s)	2332
AcsI	RAATTY	5 cut(s)	223, 233, 356, 1415, 2474
AcuI	CTGAAG	7 cut(s)	387, 890, 1099, 1752, 1793, 1989, 2226
AcyI	GRCGYC	1 cut(s)	1504
AdeI	CACNNNGTG	1 cut(s)	1058
AfaI	GTAC	5 cut(s)	813, 1065, 1490, 1706, 1770
AfiI	CCNNNNNNNGG	5 cut(s)	34, 850, 1048, 1187, 1560
AflII	CTTAAG	1 cut(s)	323
AflIII	ACRYGT	2 cut(s)	1701, 2032
AjnI	CCWGG	3 cut(s)	194, 843, 1888
AleI	CACNNNNGTG	1 cut(s)	944
Alw21I	GWGCWC	5 cut(s)	82, 933, 1360, 1870, 2418
Alw26I	GTCTC	3 cut(s)	261, 406, 965
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	8 cut(s)	839, 889, 891, 1841, 2086, 2162, 2427, 2440
AlwNI	CAGNNNCTG	2 cut(s)	50, 1214
Ama87I	CYCGRG	1 cut(s)	2285
AoxI	GGCC	2 cut(s)	841, 2332
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	8 cut(s)	155, 611, 878, 1035, 1214, 1301, 1691, 1799
ApoI	RAATTY	5 cut(s)	223, 233, 356, 1415, 2474
ArsI	GACNNNNNNTTYG	2 cut(s)	1328, 1360
AseI	ATTAAT	1 cut(s)	384
Asp700I	GAANNNNTTC	2 cut(s)	108, 1101
AspLEI	GCGC	1 cut(s)	1306
AspS9I	GGNCC	1 cut(s)	841
AsuHPI	GGTGA	1 cut(s)	2220
AvaI	CYCGRG	1 cut(s)	2285
AxyI	CCTNAGG	1 cut(s)	1164
BaeGI	GKGCMC	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	2334
BamHI	GGATCC	1 cut(s)	2432
BanI	GGYRCC	1 cut(s)	538
BanII	GRGCYC	2 cut(s)	1360, 1794
BauI	CACGAG	1 cut(s)	272
BbsI	GAAGAC	4 cut(s)	1399, 1923, 2177, 2232
Bbv12I	GWGCWC	5 cut(s)	82, 933, 1360, 1870, 2418
BbvI	GCAGC	8 cut(s)	167, 598, 890, 1022, 1201, 1288, 1703, 1786
BccI	CCATC	8 cut(s)	401, 607, 842, 992, 999, 1190, 1391, 2294
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	3 cut(s)	196, 845, 1890
BciVI	GTATCC	1 cut(s)	1896
BcoDI	GTCTC	3 cut(s)	261, 406, 965
BfaI	CTAG	3 cut(s)	209, 473, 1902
BfmI	CTRYAG	1 cut(s)	993
BfrI	CTTAAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	1896
BglII	AGATCT	2 cut(s)	175, 1426
BisI	GCNGC	9 cut(s)	156, 612, 879, 1036, 1122, 1215, 1302, 1692, 1800
BlpI	GCTNAGC	1 cut(s)	2483
BlsI	GCNGC	9 cut(s)	157, 613, 880, 1037, 1123, 1216, 1303, 1693, 1801
BmcAI	AGTACT	1 cut(s)	1770
Bme1390I	CCNGG	3 cut(s)	196, 845, 1890
BmeT110I	CYCGRG	1 cut(s)	2285
BmgT120I	GGNCC	1 cut(s)	841
BmiI	GGNNCC	6 cut(s)	293, 540, 842, 1226, 2056, 2434
BmrFI	CCNGG	3 cut(s)	196, 845, 1890
BmsI	GCATC	9 cut(s)	352, 910, 1022, 1133, 1201, 1435, 1678, 1745, 2360
BpiI	GAAGAC	4 cut(s)	1399, 1923, 2177, 2232
BplI	GAGNNNNNCTC	2 cut(s)	1852, 1884
Bpu10I	CCTNAGC	3 cut(s)	5, 902, 1047
Bpu1102I	GCTNAGC	1 cut(s)	2483
BpuEI	CTTGAG	4 cut(s)	551, 1328, 1519, 2432
Bsa29I	ATCGAT	1 cut(s)	1194
BsaBI	GATNNNNATC	3 cut(s)	453, 1431, 1941
BsaHI	GRCGYC	1 cut(s)	1504
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	195, 2436
BsaXI	ACNNNNNCTCC	2 cut(s)	1472, 1502
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 850, 1048, 1187, 1560
Bse1I	ACTGG	6 cut(s)	86, 142, 670, 1685, 2031, 2335
Bse21I	CCTNAGG	1 cut(s)	1164
Bse3DI	GCAATG	1 cut(s)	1251
Bse8I	GATNNNNATC	3 cut(s)	453, 1431, 1941
BseBI	CCWGG	3 cut(s)	196, 845, 1890
BseCI	ATCGAT	1 cut(s)	1194
BseDI	CCNNGG	2 cut(s)	195, 2436
BseGI	GGATG	8 cut(s)	853, 1010, 1037, 1825, 1942, 2170, 2212, 2331
BseJI	GATNNNNATC	3 cut(s)	453, 1431, 1941
BseLI	CCNNNNNNNGG	5 cut(s)	34, 850, 1048, 1187, 1560
BseMI	GCAATG	1 cut(s)	1251
BseMII	CTCAG	3 cut(s)	19, 1061, 1178
BseNI	ACTGG	6 cut(s)	86, 142, 670, 1685, 2031, 2335
BseRI	GAGGAG	2 cut(s)	983, 1493
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	8 cut(s)	167, 598, 890, 1022, 1201, 1288, 1703, 1786
BsgI	GTGCAG	1 cut(s)	897
BshFI	GGCC	2 cut(s)	843, 2334
BshNI	GGYRCC	1 cut(s)	538
BshVI	ATCGAT	1 cut(s)	1194
BsiHKAI	GWGCWC	5 cut(s)	82, 933, 1360, 1870, 2418
BsiHKCI	CYCGRG	1 cut(s)	2285
BsiSI	CCGG	1 cut(s)	2348
BslFI	GGGAC	1 cut(s)	1330
BslI	CCNNNNNNNGG	5 cut(s)	34, 850, 1048, 1187, 1560
BsmAI	GTCTC	3 cut(s)	261, 406, 965
BsmFI	GGGAC	1 cut(s)	1330
BsnI	GGCC	2 cut(s)	843, 2334
Bso31I	GGTCTC	1 cut(s)	406
BsoBI	CYCGRG	1 cut(s)	2285
Bsp1286I	GDGCHC	6 cut(s)	82, 933, 1360, 1794, 1870, 2418
Bsp1720I	GCTNAGC	1 cut(s)	2483
Bsp19I	CCATGG	1 cut(s)	2436
BspACI	CCGC	3 cut(s)	881, 1122, 1612
BspANI	GGCC	2 cut(s)	843, 2334
BspCNI	CTCAG	3 cut(s)	18, 1060, 1177
BspDI	ATCGAT	1 cut(s)	1194
BspHI	TCATGA	1 cut(s)	1093
BspLI	GGNNCC	6 cut(s)	293, 540, 842, 1226, 2056, 2434
BspPI	GGATC	8 cut(s)	839, 889, 891, 1841, 2086, 2162, 2427, 2440
BspQI	GCTCTTC	1 cut(s)	1875
BspT107I	GGYRCC	1 cut(s)	538
BspTI	CTTAAG	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	1251
BsrI	ACTGG	6 cut(s)	86, 142, 670, 1685, 2031, 2335
BssECI	CCNNGG	2 cut(s)	195, 2436
BssNI	GRCGYC	1 cut(s)	1504
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	2436
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	3 cut(s)	196, 845, 1890
Bst4CI	ACNGT	3 cut(s)	983, 1331, 2125
Bst6I	CTCTTC	2 cut(s)	264, 1875
BstACI	GRCGYC	1 cut(s)	1504
BstAFI	CTTAAG	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	1454
BstC8I	GCNNGC	8 cut(s)	29, 488, 876, 1160, 1591, 1696, 1857, 1926
BstDEI	CTNAG	7 cut(s)	5, 464, 902, 1047, 1164, 1608, 2483
BstDSI	CCRYGG	1 cut(s)	2436
BstEII	GGTNACC	1 cut(s)	1748
BstENI	CCTNNNNNAGG	1 cut(s)	1046
BstF5I	GGATG	8 cut(s)	853, 1010, 1037, 1825, 1942, 2170, 2212, 2331
BstHHI	GCGC	1 cut(s)	1306
BstMAI	GTCTC	3 cut(s)	261, 406, 965
BstNI	CCWGG	3 cut(s)	196, 845, 1890
BstNSI	RCATGY	3 cut(s)	1287, 1705, 2036
BstPI	GGTNACC	1 cut(s)	1748
BstSCI	CCNGG	3 cut(s)	194, 843, 1888
BstSFI	CTRYAG	1 cut(s)	993
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	8 cut(s)	167, 598, 890, 1022, 1201, 1288, 1703, 1786
BstV2I	GAAGAC	4 cut(s)	1399, 1923, 2177, 2232
BstX2I	RGATCY	4 cut(s)	175, 883, 1426, 2432
BstYI	RGATCY	4 cut(s)	175, 883, 1426, 2432
Bsu15I	ATCGAT	1 cut(s)	1194
Bsu36I	CCTNAGG	1 cut(s)	1164
BsuI	GTATCC	1 cut(s)	1896
BsuRI	GGCC	2 cut(s)	843, 2334
BsuTUI	ATCGAT	1 cut(s)	1194
BtgI	CCRYGG	1 cut(s)	2436
BtsCI	GGATG	8 cut(s)	853, 1010, 1037, 1825, 1942, 2170, 2212, 2331
BtsIMutI	CAGTG	4 cut(s)	663, 1244, 1336, 2024
Cac8I	GCNNGC	8 cut(s)	29, 488, 876, 1160, 1591, 1696, 1857, 1926
CaiI	CAGNNNCTG	2 cut(s)	50, 1214
CciI	TCATGA	1 cut(s)	1093
CfoI	GCGC	1 cut(s)	1306
Cfr13I	GGNCC	1 cut(s)	841
ClaI	ATCGAT	1 cut(s)	1194
CseI	GACGC	1 cut(s)	1493
Csp6I	GTAC	5 cut(s)	812, 1064, 1489, 1705, 1769
CspCI	CAANNNNNGTGG	4 cut(s)	102, 137, 1742, 1777
CviQI	GTAC	5 cut(s)	812, 1064, 1489, 1705, 1769
DdeI	CTNAG	7 cut(s)	5, 464, 902, 1047, 1164, 1608, 2483
DraIII	CACNNNGTG	1 cut(s)	1058
EaeI	YGGCCR	1 cut(s)	2332
Eam1104I	CTCTTC	2 cut(s)	264, 1875
EarI	CTCTTC	2 cut(s)	264, 1875
Ecl136II	GAGCTC	1 cut(s)	1358
Eco130I	CCWWGG	1 cut(s)	2436
Eco24I	GRGCYC	2 cut(s)	1360, 1794
Eco31I	GGTCTC	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	1358
Eco57I	CTGAAG	7 cut(s)	387, 890, 1099, 1752, 1793, 1989, 2226
Eco81I	CCTNAGG	1 cut(s)	1164
Eco88I	CYCGRG	1 cut(s)	2285
Eco91I	GGTNACC	1 cut(s)	1748
EcoICRI	GAGCTC	1 cut(s)	1358
EcoNI	CCTNNNNNAGG	1 cut(s)	1046
EcoO65I	GGTNACC	1 cut(s)	1748
EcoRI	GAATTC	1 cut(s)	2474
EcoRII	CCWGG	3 cut(s)	194, 843, 1888
EcoT14I	CCWWGG	1 cut(s)	2436
EcoT22I	ATGCAT	3 cut(s)	1450, 1660, 1671
EcoT38I	GRGCYC	2 cut(s)	1360, 1794
ErhI	CCWWGG	1 cut(s)	2436
FalI	AAGNNNNNCTT	4 cut(s)	1380, 1412, 1622, 1654
FaqI	GGGAC	1 cut(s)	1330
FauNDI	CATATG	1 cut(s)	1834
Fnu4HI	GCNGC	9 cut(s)	156, 612, 879, 1036, 1122, 1215, 1302, 1692, 1800
FokI	GGATG	8 cut(s)	860, 1017, 1044, 1812, 1929, 2177, 2219, 2338
FriOI	GRGCYC	2 cut(s)	1360, 1794
Fsp4HI	GCNGC	9 cut(s)	156, 612, 879, 1036, 1122, 1215, 1302, 1692, 1800
FspBI	CTAG	3 cut(s)	209, 473, 1902
GlaI	GCGC	1 cut(s)	1305
GluI	GCNGC	9 cut(s)	156, 612, 879, 1036, 1122, 1215, 1302, 1692, 1800
HaeIII	GGCC	2 cut(s)	843, 2334
HapII	CCGG	1 cut(s)	2348
HgaI	GACGC	1 cut(s)	1493
HhaI	GCGC	1 cut(s)	1306
Hin1I	GRCGYC	1 cut(s)	1504
Hin6I	GCGC	1 cut(s)	1304
HinP1I	GCGC	1 cut(s)	1304
HincII	GTYRAC	1 cut(s)	2193
HindII	GTYRAC	1 cut(s)	2193
HindIII	AAGCTT	3 cut(s)	689, 1156, 1323
HpaII	CCGG	1 cut(s)	2348
HphI	GGTGA	1 cut(s)	2220
Hpy166II	GTNNAC	4 cut(s)	80, 708, 2193, 2228
Hpy188III	TCNNGA	9 cut(s)	551, 868, 1094, 1128, 1166, 1472, 2095, 2285, 2297
Hpy8I	GTNNAC	4 cut(s)	80, 708, 2193, 2228
HpyAV	CCTTC	4 cut(s)	1271, 1568, 1592, 1768
HpyCH4III	ACNGT	3 cut(s)	983, 1331, 2125
HpyCH4IV	ACGT	2 cut(s)	410, 1528
HpyF3I	CTNAG	7 cut(s)	5, 464, 902, 1047, 1164, 1608, 2483
HpySE526I	ACGT	2 cut(s)	410, 1528
Hsp92I	GRCGYC	1 cut(s)	1504
HspAI	GCGC	1 cut(s)	1304
LguI	GCTCTTC	1 cut(s)	1875
LmnI	GCTCC	3 cut(s)	291, 1230, 1363
Lsp1109I	GCAGC	8 cut(s)	167, 598, 890, 1022, 1201, 1288, 1703, 1786
LweI	GCATC	9 cut(s)	352, 910, 1022, 1133, 1201, 1435, 1678, 1745, 2360
MaeI	CTAG	3 cut(s)	209, 473, 1902
MaeII	ACGT	2 cut(s)	410, 1528
MaeIII	GTNAC	3 cut(s)	13, 645, 1748
MfeI	CAATTG	4 cut(s)	32, 615, 1757, 1911
MflI	RGATCY	4 cut(s)	175, 883, 1426, 2432
MhlI	GDGCHC	6 cut(s)	82, 933, 1360, 1794, 1870, 2418
MlsI	TGGCCA	1 cut(s)	2334
MluNI	TGGCCA	1 cut(s)	2334
MlyI	GAGTC	2 cut(s)	446, 1352
MmeI	TCCRAC	1 cut(s)	1934
Mox20I	TGGCCA	1 cut(s)	2334
Mph1103I	ATGCAT	3 cut(s)	1450, 1660, 1671
MroXI	GAANNNNTTC	2 cut(s)	108, 1101
MscI	TGGCCA	1 cut(s)	2334
MseI	TTAA	6 cut(s)	302, 324, 384, 732, 1365, 2156
MslI	CAYNNNNRTG	1 cut(s)	944
Msp20I	TGGCCA	1 cut(s)	2334
MspA1I	CMGCKG	3 cut(s)	611, 881, 2487
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	1 cut(s)	2348
MspR9I	CCNGG	3 cut(s)	196, 845, 1890
MunI	CAATTG	4 cut(s)	32, 615, 1757, 1911
MvaI	CCWGG	3 cut(s)	196, 845, 1890
NcoI	CCATGG	1 cut(s)	2436
NdeI	CATATG	1 cut(s)	1834
NlaIV	GGNNCC	6 cut(s)	293, 540, 842, 1226, 2056, 2434
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	13
NsiI	ATGCAT	3 cut(s)	1450, 1660, 1671
NspI	RCATGY	3 cut(s)	1287, 1705, 2036
OliI	CACNNNNGTG	1 cut(s)	944
PaeR7I	CTCGAG	1 cut(s)	2285
PagI	TCATGA	1 cut(s)	1093
PciI	ACATGT	2 cut(s)	1701, 2032
PciSI	GCTCTTC	1 cut(s)	1875
PcsI	WCGNNNNNNNCGW	1 cut(s)	1200
PdmI	GAANNNNTTC	2 cut(s)	108, 1101
PfeI	GAWTC	9 cut(s)	65, 547, 605, 806, 854, 1370, 1532, 2136, 2339
PflMI	CCANNNNNTGG	3 cut(s)	34, 1187, 1560
PkrI	GCNGC	9 cut(s)	157, 613, 880, 1037, 1123, 1216, 1303, 1693, 1801
PleI	GAGTC	2 cut(s)	445, 1351
PpsI	GAGTC	2 cut(s)	445, 1351
PscI	ACATGT	2 cut(s)	1701, 2032
PshBI	ATTAAT	1 cut(s)	384
PsiI	TTATAA	2 cut(s)	1266, 1511
Psp124BI	GAGCTC	1 cut(s)	1360
Psp6I	CCWGG	3 cut(s)	194, 843, 1888
PspEI	GGTNACC	1 cut(s)	1748
PspGI	CCWGG	3 cut(s)	194, 843, 1888
PspN4I	GGNNCC	6 cut(s)	293, 540, 842, 1226, 2056, 2434
PspPI	GGNCC	1 cut(s)	841
PsrI	GAACNNNNNNTAC	2 cut(s)	1056, 1088
PstNI	CAGNNNCTG	2 cut(s)	50, 1214
PsuI	RGATCY	4 cut(s)	175, 883, 1426, 2432
PvuII	CAGCTG	2 cut(s)	611, 2487
RsaI	GTAC	5 cut(s)	813, 1065, 1490, 1706, 1770
RsaNI	GTAC	5 cut(s)	812, 1064, 1489, 1705, 1769
RseI	CAYNNNNRTG	1 cut(s)	944
SacI	GAGCTC	1 cut(s)	1360
SapI	GCTCTTC	1 cut(s)	1875
SaqAI	TTAA	6 cut(s)	302, 324, 384, 732, 1365, 2156
SatI	GCNGC	9 cut(s)	156, 612, 879, 1036, 1122, 1215, 1302, 1692, 1800
Sau96I	GGNCC	1 cut(s)	841
ScaI	AGTACT	1 cut(s)	1770
SchI	GAGTC	2 cut(s)	446, 1352
ScrFI	CCNGG	3 cut(s)	196, 845, 1890
SduI	GDGCHC	6 cut(s)	82, 933, 1360, 1794, 1870, 2418
SfaNI	GCATC	9 cut(s)	352, 910, 1022, 1133, 1201, 1435, 1678, 1745, 2360
SfcI	CTRYAG	1 cut(s)	993
Sfr274I	CTCGAG	1 cut(s)	2285
SlaI	CTCGAG	1 cut(s)	2285
SmiMI	CAYNNNNRTG	1 cut(s)	944
SmlI	CTYRAG	6 cut(s)	323, 530, 1307, 1498, 2285, 2411
SmoI	CTYRAG	6 cut(s)	323, 530, 1307, 1498, 2285, 2411
SsiI	CCGC	3 cut(s)	881, 1122, 1612
SspI	AATATT	1 cut(s)	1270
SspMI	CTAG	3 cut(s)	209, 473, 1902
SstI	GAGCTC	1 cut(s)	1360
StyD4I	CCNGG	3 cut(s)	194, 843, 1888
StyI	CCWWGG	1 cut(s)	2436
TaaI	ACNGT	3 cut(s)	983, 1331, 2125
TaiI	ACGT	2 cut(s)	413, 1531
TaqI	TCGA	5 cut(s)	340, 1194, 1948, 2286, 2383
TatI	WGTACW	3 cut(s)	1063, 1488, 1768
TauI	GCSGC	1 cut(s)	1124
TfiI	GAWTC	9 cut(s)	65, 547, 605, 806, 854, 1370, 1532, 2136, 2339
Tru1I	TTAA	6 cut(s)	302, 324, 384, 732, 1365, 2156
Tru9I	TTAA	6 cut(s)	302, 324, 384, 732, 1365, 2156
TscAI	CASTG	4 cut(s)	670, 1244, 1336, 2031
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	8 cut(s)	155, 611, 878, 1035, 1214, 1301, 1691, 1799
Tsp45I	GTSAC	1 cut(s)	13
TspRI	CASTG	4 cut(s)	670, 1244, 1336, 2031
Van91I	CCANNNNNTGG	3 cut(s)	34, 1187, 1560
Vha464I	CTTAAG	1 cut(s)	323
VneI	GTGCAC	1 cut(s)	78
VspI	ATTAAT	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	1046
XapI	RAATTY	5 cut(s)	223, 233, 356, 1415, 2474
XceI	RCATGY	3 cut(s)	1287, 1705, 2036
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1836
XhoI	CTCGAG	1 cut(s)	2285
XmnI	GAANNNNTTC	2 cut(s)	108, 1101
XspI	CTAG	3 cut(s)	209, 473, 1902
ZrmI	AGTACT	1 cut(s)	1770
Zsp2I	ATGCAT	3 cut(s)	1450, 1660, 1671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.