Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

22588720 .. 22611052

Gene Structure 22333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG117900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4530 bp

ATGGAGGAATCGGTAGGCATGGAAGTGCCAATCCTCGGCAGCGATTCAGTGAAATGGATCGAGTTCTCTATTCTTTCATCTAATGAATTGGCCGCCACCGCCGATGCTGATACTTGTGCCCCTCTCACTCGCGATTGCGCTTCTTCCATCGCCATTGGAGACCCTCCTACATATCTCATATGGAGAATCCACAAGGATTTCCCCCGTACTCTCGAATTACTCGAGCTCTCTGCTAAGAAAGAATTTCCAAAAGTCGGACTGCGAATCACTTTTCCAGAAGCACTCTCTTCTTCAGTTTTTCTTTGCAAAAATGAGATTGATATCGGTTCCGGGAGCCACCCCTATTTGCTTTATGCATTGACCGTGGCCGGAGTCGCTTACCTTTTGAAACTTGGGACCACCTCTAGCTATGCACCCTGCTCTGTTATTAGAGAGTTTAACTTGCATCCCTACGGACCAATTAGCAGTGCCGCAGCAACGCCGACCGGATGTCTTGTTGTAGGTCGGAATGACGGCTCACTTGCTTGCTTTCAATTCACACTTGAATCCACTGCTCCTGGTTTTCTGCAAGAGCTACGGGATGATTCAGGAACTGGTAGTTTCTGGGGTTTCAAGTCAAGGGGTAGGACGGTAGGGGCTGTGCAGGACTTGGTTATATCTATGGTTCATGGGAAACCACTTATATTTGTGATTCATACGGATCGGGTGTTAAGAGTATGGGATCTTTCATTTCATGGCAGGCTCTTTGCCAATAAGATGAACGGTCCAACAGTGTCAGGAGCTGCATCGGTAAGGTTGTGGGTTGGTCAAGCTGACAATGACTCGAGCATAATTCCTGTGGCAATCTTGTACAGGCATAATTCGGATATTGGCTCAGAGACAATCTACGTATATAGGCTCCATTGTAACGTGAGAGACAGAATTGAATTATTGATATATCGTTCAAAACAAATAATTCATGTTGAGGATGGATGGATTGATGTCAAACTTATTTCCAACAAGATATGCATATTGAAAAATCACGGACTGGTGTTTCTCAAGTTGTTGGATATAAGTGCCGACACGGTAGATGCAGTTTGGGTAGATGCAGTTTGTTATCCTTTGCAAGAGGACTTTGTTGCAGATCAACTCTTTCAAAGTTCAAAACATTCTTCGGATGACCTTCTTTTGATAACTCATTCAATATTTTCATCTTCAAGGGATCATATTCTACCCGTTGTATCTTCTATTTTCTTACGTAGGCTGCTTCTTCCTGGCGTTCATCATAATGCTGCTTTGCGCACAACTTTGTTGGATTATAATAGGCACTGGACAGAGTCAGATTTCCACTCCTTAACTGCTGATGGGTTGAAGAAGGAAATTCTTTCCCTGATTGAACATGAGGCTCTGACTGGTAATTCATCGTCAATATTTTGCTGCTGGGAAATTTTTTGTGCTCGCTATTTCGAAAACTGGTGCAAGAGCAATGCACCATGTGGCCTGCTTGTTGATTCCTCAACCGGCACTGTTGGTTTAATTAGAAAGAGTTCAGTATCTTTTTTTCGTTCTTTGGAGGATATTGAGCGGGTTAATGATGGCTCTTTGGATGAACTTGGCAATATTCCAAGCTTTGGGTTGGATTCATTTTGCAAGGCTGATCGTAAGCTACTTGCTGAAATGCTCAGGTGTGTCACTAATGTCAGCCAGCAATTGGGAAAAACAGCTTCTGCTATATTTTACGAATCACTCATTAGTGCACCACCAGTTATCTCATCTAAAGAAATTATTCCACGCCTATTGAAGATATTAGAAACTGGATATAGTTCAACAGCAGCAGAGCTTCGGATAGCAGATCTTGGAACTGATCTTGCCTGGGAGAAAAATCTAGCAGATCACAAAAATTTGAGGAAATTTTCTATTGACATGATGAAGTCTCTTCATGCTTTGCACGAGAAATCTGGCACATGGAGCCGTATTTTAAGTGTGATTGAGAAGTATCTTAAGTATCTCATACCTCGAAAAATTATACAAAAATTTGATGCTGAAGTAGCATTGGATATTAATGCCTCCATCTTGGTCTCGGCTACGTTTCAAGTTGCAAAGGTTATGTTTGAGTCTGCATTGGATATTCATCTGTTTCTAAGCTATCTAGTGAGCATTAGCAGGCAGATCAATATGCTACATGATGATATATCCAAAATACAACTTGAGTTGGTGCCAATGATTCAAGAAGTCATTTATGAGTGGCTTCTCCTGCATTTCTTTGCCACCACACCATCTGAATCAGCTGCAATTGAAGATTTCAGCTCTCAACTTTCATTGTTACAAATTGATAGCAACACTGGTAGAAGATTATGGAATGAGAAGCTTGGGAAGTGCGAGTTCACTCTGGCTTTTATATTCTTACTTAATGTTAGAAGTTCCTCCAAAGACCAGAACCACTTTTCTCCAAGAAGCATACCAAGCGTTGAGGACATAATTGATTCAGTACGAGAGTTTGATAGCTGGATCATGTGGGGCCAGGATGGGGAATCCCTTACTTTCCTGAAGCGTGCAGCGGATCTTGCATTGATCCTGCTAAGGCACGGGCAGTATGATGCTGTTGAGCACTTACTCACTATTGTGGAGGCACATTTAGAAAAGGAGGAGACTTCTCACGGTATTAGAGCTACAGATGGTGGATGGTGCATACTTCATCATCTTTTAGGATGCTGCTTCCTTGCTCAGGCACATCGTGGAGTACATGGGGTTCTGAAAGAGAGGAAAGTTCATGAAGCTATTCGTTGTTTCTTCAGAGCCGCATCTGGAAACGGGTCATCTCATGCTTTACAAAGCTTGCCTCAGGAAGCGTGGTTGCCACATCTTGGTATCGATGGTAGCGTATCAGATGCTGCATGGAGGCTCCATTACTATCAGTGGGCAATGCAGATATGTGAGCATTATAATATTAGTGAAGGTGCATGTCAGTTTGCTCTTGCTGCGCTTGAGCAAGTTGAGGAAGCTTACAGTGCAAATAATGAGTCCCATGACAGAGCTCCATTTAATGAATCAGTATCTACCATCAAAGGAAGACTTTGGGCAAATGTTTGCAAATTTACTTTAGATCTCAATCTCTATTATGATGCATATTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAGTACATCTGCTTGAGGCGTCTTATAAATGTTCTTTATGAACGTGGTGCCATAAAGATTCTATGTGGTGGTCAGCTACCATTCATTGGTCTTACAGAGAAGGTAGAACAAGAGCTTGCATGGAAGGCAGAGCGGTCAGACATTTTAGCAAAGACAAACTTATATAAGTTGCTTTATGCATTTGAAATGCATCGGCATAACTGGCGACAAGCAGCAAGCTACATGTACCTTTATTCTGCCCGTATGAGAACTGAAGCATCTCTGAAAGGTTACCAACAATTGTGGCGAGTACTGAAGGAGATACAGAATGGGCTCTCTGCTGCTATCAACGCACTTCATCTTGTTCATCCAGCATATGCTTGGATTGATCCTCTGCTTGCGAGAAGTGCTCTTCACAACGAGCAGTATCCAGGTAGAGAGGCTAGGATAACAATTGAAGACCAGCCAGCAAACAATGATGTTCATCCTCGAAGTTGGAAATCTTTTATAGATATTCAGAAAATTGAGGACGAGTTTGTGCTTACTTCAGCAGAACATCTGCTTTCACTGGCAGATGTCAAATGGACAAATACAGGAACCCAGACAGCACCATTAGAGTTGGTTGATCTTTTGATCCAGACAAATCTATATGATATGGCATTTACAGTTCTTGTAAGATTCTTCAAAGGTTCAGAGTTAAAGAGGGGATTGGAAAGAGTTTTCTCAGCTATGTCACTAAAATGCTTTCCACATTTAGTTGATTCTTCAAGGGTTGGGGATGATCCCACAACACAAGGTCTTCTGTTGACTTCTCCAAAGGATGATGTGATCGTTCATGGTTCACCAGATATGTCTTCAGCAAATCAACAATCCAATGGAATAAATCAATGGGGAACTCTCGAGCTTTATCTTGACCGGTATAAAGTGTTCCATACACGTCTACCACTAATTGTTGCCGAAACTCTTCTTCGTACGGATTCTCAAATCCAACTGCCTCTTTGGTTGGTTAAATTATTCAAGGATGGCAGGAGGGAAAAGACTTTGGGGATGACTAGCCACGAATCAAATCCGGCATCGTTGTTTCAATTATATGTTGATTATGGTCGATATGGAGAAGCTATAAATCTGTTGCTTGAGCACAAAGGGTGTTTTGGATCCATGAGAGCAGCCAATATCATGAATCGTAAAAGACCATTTGGAGTTTGGTTTCCGTATACAATGATTCAGCGCCTCTGGTGCAAACTTGAGGAAATGATAAATTCCGGTCACATGGTAGATCAATGTAAGCAGTTCAAAGATTTGCTACACAGAGCTTTGCTGAAACATCTCCAACTGGTAAAGATGGACTCGGAAGAAGCACTTAGTTTTATTTCAGAAAATAAGATGGAAACACTTCGGATGCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

1509

Amino Acids

170.29

Weight (kDa)

6.12

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	58 - 521	1.3e-53	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	544 - 731	1.8e-86	NUP160, helical domain
TPR_NUP160_120_M	PF23354	910 - 1161	5.3e-34	NUP160/120 middle TPR
HEAT_Nup120	PF23300	911 - 1061	1.4e-12	Nucleoporin Nup120, HEAT repeats
TPR_Nup160_C	PF23347	1213 - 1477	1.7e-10	Nup160 C-terminal TPR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1299, 2922, 3167
Acc16I	TGCGCA	1 cut(s)	1280
AccB1I	GGYRCC	2 cut(s)	2194, 3188
AccB7I	CCANNNNNTGG	4 cut(s)	1610, 1690, 2843, 3227
AccBSI	CCGCTC	2 cut(s)	1564, 3274
AccI	GTMKAC	2 cut(s)	4060, 4334
AccII	CGCG	1 cut(s)	132
AciI	CCGC	7 cut(s)	93, 99, 471, 1564, 2537, 2778, 3274
AcoI	YGGCCR	2 cut(s)	90, 366
AcsI	RAATTY	8 cut(s)	242, 1359, 1425, 1879, 1889, 2012, 3071, 4378
AcuI	CTGAAG	8 cut(s)	276, 2043, 2546, 2755, 3414, 3455, 3651, 3960
AcyI	GRCGYC	1 cut(s)	3160
AdeI	CACNNNGTG	2 cut(s)	1475, 2714
AfaI	GTAC	8 cut(s)	208, 851, 2469, 2721, 3146, 3368, 3432, 4093
AfiI	CCNNNNNNNGG	8 cut(s)	35, 254, 1610, 1690, 2506, 2704, 2843, 3227
AflII	CTTAAG	1 cut(s)	1979
AflIII	ACRYGT	2 cut(s)	3363, 4055
AgeI	ACCGGT	1 cut(s)	4035
AhdI	GACNNNNNGTC	1 cut(s)	489
AjiI	CACGTC	1 cut(s)	4058
AjnI	CCWGG	5 cut(s)	556, 1252, 1850, 2499, 3550
AleI	CACNNNNGTG	1 cut(s)	2600
Alw21I	GWGCWC	7 cut(s)	228, 1438, 1738, 2589, 3016, 3532, 4260
Alw26I	GTCTC	6 cut(s)	153, 872, 909, 1917, 2062, 2621
Alw44I	GTGCAC	1 cut(s)	1734
AlwNI	CAGNNNCTG	4 cut(s)	593, 782, 1706, 2870
Ama87I	CYCGRG	3 cut(s)	221, 823, 4019
AoxI	GGCC	4 cut(s)	90, 366, 1477, 2497
ApaLI	GTGCAC	1 cut(s)	1734
ApoI	RAATTY	8 cut(s)	242, 1359, 1425, 1879, 1889, 2012, 3071, 4378
ArsI	GACNNNNNNTTYG	2 cut(s)	2984, 3016
AseI	ATTAAT	1 cut(s)	2040
AsiGI	ACCGGT	1 cut(s)	4035
Asp700I	GAANNNNTTC	5 cut(s)	1525, 1764, 2757, 4083, 4512
AspLEI	GCGC	4 cut(s)	140, 1281, 2962, 4350
AspS9I	GGNCC	4 cut(s)	396, 455, 764, 2497
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	3954
AsuII	TTCGAA	1 cut(s)	1446
AvaI	CYCGRG	3 cut(s)	221, 823, 4019
AvaII	GGWCC	3 cut(s)	396, 455, 764
AxyI	CCTNAGG	1 cut(s)	2820
BaeGI	GKGCMC	2 cut(s)	121, 1738
BamHI	GGATCC	1 cut(s)	4274
BanI	GGYRCC	2 cut(s)	2194, 3188
BanII	GRGCYC	3 cut(s)	228, 3016, 3456
BauI	CACGAG	1 cut(s)	1928
BbsI	GAAGAC	4 cut(s)	3055, 3585, 3911, 3966
Bbv12I	GWGCWC	7 cut(s)	228, 1438, 1738, 2589, 3016, 3532, 4260
BceAI	ACGGC	2 cut(s)	529, 1935
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	5 cut(s)	558, 1254, 1852, 2501, 3552
BciVI	GTATCC	1 cut(s)	3558
BcnI	CCSGG	1 cut(s)	331
BcoDI	GTCTC	6 cut(s)	153, 872, 909, 1917, 2062, 2621
BfaI	CTAG	5 cut(s)	405, 1865, 2129, 3564, 4173
BfmI	CTRYAG	1 cut(s)	2649
BfoI	RGCGCY	1 cut(s)	4351
BfrI	CTTAAG	1 cut(s)	1979
BfuI	GTATCC	1 cut(s)	3558
BglII	AGATCT	2 cut(s)	1831, 3082
BmcAI	AGTACT	1 cut(s)	3432
Bme1390I	CCNGG	6 cut(s)	331, 558, 1254, 1852, 2501, 3552
Bme18I	GGWCC	3 cut(s)	396, 455, 764
BmeRI	GACNNNNNGTC	1 cut(s)	489
BmeT110I	CYCGRG	3 cut(s)	221, 823, 4019
BmgBI	CACGTC	1 cut(s)	4058
BmgT120I	GGNCC	4 cut(s)	396, 455, 764, 2497
BmrFI	CCNGG	6 cut(s)	331, 558, 1254, 1852, 2501, 3552
BpiI	GAAGAC	4 cut(s)	3055, 3585, 3911, 3966
BplI	GAGNNNNNCTC	2 cut(s)	3514, 3546
Bpu10I	CCTNAGC	3 cut(s)	1661, 2558, 2703
Bpu14I	TTCGAA	1 cut(s)	1446
BpuEI	CTTGAG	6 cut(s)	1022, 2207, 2984, 3175, 4274, 4385
BpuMI	CCSGG	1 cut(s)	331
Bsa29I	ATCGAT	1 cut(s)	2850
BsaAI	YACGTR	2 cut(s)	889, 1238
BsaBI	GATNNNNATC	4 cut(s)	320, 2109, 3087, 3603
BsaHI	GRCGYC	1 cut(s)	3160
BsaI	GGTCTC	2 cut(s)	153, 2062
BsaJI	CCNNGG	3 cut(s)	34, 363, 1851
BsaWI	WCCGGW	3 cut(s)	485, 4035, 4382
BsaXI	ACNNNNNCTCC	2 cut(s)	3128, 3158
Bsc4I	CCNNNNNNNGG	8 cut(s)	35, 254, 1610, 1690, 2506, 2704, 2843, 3227
Bse118I	RCCGGY	2 cut(s)	1499, 4035
Bse21I	CCTNAGG	1 cut(s)	2820
Bse3DI	GCAATG	2 cut(s)	1471, 2907
Bse8I	GATNNNNATC	4 cut(s)	320, 2109, 3087, 3603
BseBI	CCWGG	5 cut(s)	558, 1254, 1852, 2501, 3552
BseCI	ATCGAT	1 cut(s)	2850
BseDI	CCNNGG	3 cut(s)	34, 363, 1851
BseJI	GATNNNNATC	4 cut(s)	320, 2109, 3087, 3603
BseLI	CCNNNNNNNGG	8 cut(s)	35, 254, 1610, 1690, 2506, 2704, 2843, 3227
BseMI	GCAATG	2 cut(s)	1471, 2907
BseMII	CTCAG	5 cut(s)	888, 1675, 2717, 2834, 3858
BseRI	GAGGAG	2 cut(s)	2639, 3149
BseSI	GKGCMC	2 cut(s)	121, 1738
BseYI	CCCAGC	1 cut(s)	1419
BsgI	GTGCAG	2 cut(s)	662, 2553
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	4 cut(s)	92, 368, 1479, 2499
BshNI	GGYRCC	2 cut(s)	2194, 3188
BshTI	ACCGGT	1 cut(s)	4035
BshVI	ATCGAT	1 cut(s)	2850
BsiEI	CGRYCG	1 cut(s)	486
BsiHKAI	GWGCWC	7 cut(s)	228, 1438, 1738, 2589, 3016, 3532, 4260
BsiHKCI	CYCGRG	3 cut(s)	221, 823, 4019
BsiSI	CCGG	7 cut(s)	330, 369, 486, 1500, 4036, 4190, 4383
BsiWI	CGTACG	1 cut(s)	4091
BslFI	GGGAC	2 cut(s)	409, 2986
BslI	CCNNNNNNNGG	8 cut(s)	35, 254, 1610, 1690, 2506, 2704, 2843, 3227
BsmAI	GTCTC	6 cut(s)	153, 872, 909, 1917, 2062, 2621
BsmFI	GGGAC	2 cut(s)	409, 2986
BsnI	GGCC	4 cut(s)	92, 368, 1479, 2499
Bso31I	GGTCTC	2 cut(s)	153, 2062
BsoBI	CYCGRG	3 cut(s)	221, 823, 4019
Bsp119I	TTCGAA	1 cut(s)	1446
Bsp1286I	GDGCHC	9 cut(s)	121, 228, 1438, 1738, 2589, 3016, 3456, 3532, 4260
Bsp1407I	TGTACA	1 cut(s)	849
Bsp68I	TCGCGA	1 cut(s)	132
BspACI	CCGC	7 cut(s)	93, 99, 471, 1564, 2537, 2778, 3274
BspANI	GGCC	4 cut(s)	92, 368, 1479, 2499
BspCNI	CTCAG	5 cut(s)	887, 1674, 2716, 2833, 3857
BspDI	ATCGAT	1 cut(s)	2850
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	2 cut(s)	2749, 4296
BspQI	GCTCTTC	1 cut(s)	3537
BspT104I	TTCGAA	1 cut(s)	1446
BspT107I	GGYRCC	2 cut(s)	2194, 3188
BspTI	CTTAAG	1 cut(s)	1979
BspTNI	GGTCTC	2 cut(s)	153, 2062
BsrBI	CCGCTC	2 cut(s)	1564, 3274
BsrDI	GCAATG	2 cut(s)	1471, 2907
BsrFI	RCCGGY	2 cut(s)	1499, 4035
BsrGI	TGTACA	1 cut(s)	849
BssAI	RCCGGY	2 cut(s)	1499, 4035
BssECI	CCNNGG	3 cut(s)	34, 363, 1851
BssNAI	GTATAC	1 cut(s)	4335
BssNI	GRCGYC	1 cut(s)	3160
BssSI	CACGAG	1 cut(s)	1928
Bst1107I	GTATAC	1 cut(s)	4335
Bst2BI	CACGAG	1 cut(s)	1928
Bst2UI	CCWGG	5 cut(s)	558, 1254, 1852, 2501, 3552
Bst4CI	ACNGT	9 cut(s)	364, 631, 764, 772, 1066, 1507, 2639, 2987, 3787
Bst6I	CTCTTC	4 cut(s)	292, 1920, 3537, 4089
BstACI	GRCGYC	1 cut(s)	3160
BstAFI	CTTAAG	1 cut(s)	1979
BstAPI	GCANNNNNTGC	1 cut(s)	3110
BstAUI	TGTACA	1 cut(s)	849
BstBAI	YACGTR	2 cut(s)	889, 1238
BstBI	TTCGAA	1 cut(s)	1446
BstDEI	CTNAG	9 cut(s)	234, 874, 1661, 2120, 2558, 2703, 2820, 3844, 4481
BstDSI	CCRYGG	1 cut(s)	363
BstEII	GGTNACC	1 cut(s)	3410
BstENI	CCTNNNNNAGG	1 cut(s)	2702
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	4351
BstHHI	GCGC	4 cut(s)	140, 1281, 2962, 4350
BstMAI	GTCTC	6 cut(s)	153, 872, 909, 1917, 2062, 2621
BstMCI	CGRYCG	1 cut(s)	486
BstNI	CCWGG	5 cut(s)	558, 1254, 1852, 2501, 3552
BstNSI	RCATGY	2 cut(s)	2943, 3367
BstPI	GGTNACC	1 cut(s)	3410
BstSCI	CCNGG	6 cut(s)	329, 556, 1252, 1850, 2499, 3550
BstSFI	CTRYAG	1 cut(s)	2649
BstSLI	GKGCMC	2 cut(s)	121, 1738
BstSNI	TACGTA	2 cut(s)	889, 1238
BstUI	CGCG	1 cut(s)	132
BstV2I	GAAGAC	4 cut(s)	3055, 3585, 3911, 3966
BstX2I	RGATCY	5 cut(s)	721, 1831, 2539, 3082, 4274
BstYI	RGATCY	5 cut(s)	721, 1831, 2539, 3082, 4274
BstZ17I	GTATAC	1 cut(s)	4335
Bsu15I	ATCGAT	1 cut(s)	2850
Bsu36I	CCTNAGG	1 cut(s)	2820
BsuI	GTATCC	1 cut(s)	3558
BsuRI	GGCC	4 cut(s)	92, 368, 1479, 2499
BsuTUI	ATCGAT	1 cut(s)	2850
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	133
BtrI	CACGTC	1 cut(s)	4058
BtsI	GCAGTG	2 cut(s)	472, 549
BtuMI	TCGCGA	1 cut(s)	132
CaiI	CAGNNNCTG	4 cut(s)	593, 782, 1706, 2870
CciI	TCATGA	2 cut(s)	2749, 4296
CfoI	GCGC	4 cut(s)	140, 1281, 2962, 4350
Cfr10I	RCCGGY	2 cut(s)	1499, 4035
Cfr13I	GGNCC	4 cut(s)	396, 455, 764, 2497
ClaI	ATCGAT	1 cut(s)	2850
CseI	GACGC	1 cut(s)	3149
Csp6I	GTAC	8 cut(s)	207, 850, 2468, 2720, 3145, 3367, 3431, 4092
CspAI	ACCGGT	1 cut(s)	4035
CspCI	CAANNNNNGTGG	4 cut(s)	1758, 1793, 3404, 3439
CviQI	GTAC	8 cut(s)	207, 850, 2468, 2720, 3145, 3367, 3431, 4092
DdeI	CTNAG	9 cut(s)	234, 874, 1661, 2120, 2558, 2703, 2820, 3844, 4481
DraIII	CACNNNGTG	2 cut(s)	1475, 2714
DriI	GACNNNNNGTC	1 cut(s)	489
EaeI	YGGCCR	2 cut(s)	90, 366
Eam1104I	CTCTTC	4 cut(s)	292, 1920, 3537, 4089
Eam1105I	GACNNNNNGTC	1 cut(s)	489
EarI	CTCTTC	4 cut(s)	292, 1920, 3537, 4089
Ecl136II	GAGCTC	2 cut(s)	226, 3014
Eco105I	TACGTA	2 cut(s)	889, 1238
Eco24I	GRGCYC	3 cut(s)	228, 3016, 3456
Eco31I	GGTCTC	2 cut(s)	153, 2062
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	3 cut(s)	396, 455, 764
Eco53kI	GAGCTC	2 cut(s)	226, 3014
Eco57I	CTGAAG	8 cut(s)	276, 2043, 2546, 2755, 3414, 3455, 3651, 3960
Eco81I	CCTNAGG	1 cut(s)	2820
Eco88I	CYCGRG	3 cut(s)	221, 823, 4019
Eco91I	GGTNACC	1 cut(s)	3410
EcoICRI	GAGCTC	2 cut(s)	226, 3014
EcoNI	CCTNNNNNAGG	1 cut(s)	2702
EcoO65I	GGTNACC	1 cut(s)	3410
EcoRII	CCWGG	5 cut(s)	556, 1252, 1850, 2499, 3550
EcoRV	GATATC	1 cut(s)	322
EcoT22I	ATGCAT	5 cut(s)	358, 1010, 3106, 3322, 3333
EcoT38I	GRGCYC	3 cut(s)	228, 3016, 3456
FalI	AAGNNNNNCTT	6 cut(s)	3036, 3068, 3284, 3316, 4464, 4496
FaqI	GGGAC	2 cut(s)	409, 2986
FauI	CCCGC	1 cut(s)	1557
FauNDI	CATATG	2 cut(s)	179, 3496
FblI	GTMKAC	2 cut(s)	4060, 4334
FriOI	GRGCYC	3 cut(s)	228, 3016, 3456
FspBI	CTAG	5 cut(s)	405, 1865, 2129, 3564, 4173
FspI	TGCGCA	1 cut(s)	1280
GlaI	GCGC	4 cut(s)	139, 1280, 2961, 4349
GsaI	CCCAGC	1 cut(s)	1423
HaeII	RGCGCY	1 cut(s)	4351
HaeIII	GGCC	4 cut(s)	92, 368, 1479, 2499
HapII	CCGG	7 cut(s)	330, 369, 486, 1500, 4036, 4190, 4383
HgaI	GACGC	1 cut(s)	3149
HhaI	GCGC	4 cut(s)	140, 1281, 2962, 4350
Hin1I	GRCGYC	1 cut(s)	3160
Hin6I	GCGC	4 cut(s)	138, 1279, 2960, 4348
HinP1I	GCGC	4 cut(s)	138, 1279, 2960, 4348
HincII	GTYRAC	1 cut(s)	3927
HindII	GTYRAC	1 cut(s)	3927
HindIII	AAGCTT	4 cut(s)	1606, 2345, 2812, 2979
HpaII	CCGG	7 cut(s)	330, 369, 486, 1500, 4036, 4190, 4383
HphI	GGTGA	1 cut(s)	3954
Hpy166II	GTNNAC	6 cut(s)	1736, 2364, 3927, 3962, 4061, 4335
Hpy8I	GTNNAC	6 cut(s)	1736, 2364, 3927, 3962, 4061, 4335
HpyAV	CCTTC	6 cut(s)	1172, 1348, 2927, 3235, 3259, 3430
HpyCH4III	ACNGT	9 cut(s)	364, 631, 764, 772, 1066, 1507, 2639, 2987, 3787
HpyCH4IV	ACGT	6 cut(s)	888, 909, 1237, 2066, 3184, 4057
HpyF3I	CTNAG	9 cut(s)	234, 874, 1661, 2120, 2558, 2703, 2820, 3844, 4481
HpySE526I	ACGT	6 cut(s)	888, 909, 1237, 2066, 3184, 4057
Hsp92I	GRCGYC	1 cut(s)	3160
HspAI	GCGC	4 cut(s)	138, 1279, 2960, 4348
LguI	GCTCTTC	1 cut(s)	3537
LmnI	GCTCC	7 cut(s)	333, 559, 779, 903, 1947, 2886, 3019
MaeI	CTAG	5 cut(s)	405, 1865, 2129, 3564, 4173
MaeII	ACGT	6 cut(s)	888, 909, 1237, 2066, 3184, 4057
MaeIII	GTNAC	6 cut(s)	905, 1669, 2301, 3410, 3852, 4385
MbiI	CCGCTC	2 cut(s)	1564, 3274
MfeI	CAATTG	4 cut(s)	1688, 2271, 3419, 3573
MflI	RGATCY	5 cut(s)	721, 1831, 2539, 3082, 4274
MhlI	GDGCHC	9 cut(s)	121, 228, 1438, 1738, 2589, 3016, 3456, 3532, 4260
MlyI	GAGTC	6 cut(s)	381, 815, 1325, 2102, 3008, 4460
Mph1103I	ATGCAT	5 cut(s)	358, 1010, 3106, 3322, 3333
MroXI	GAANNNNTTC	5 cut(s)	1525, 1764, 2757, 4083, 4512
MslI	CAYNNNNRTG	4 cut(s)	23, 1266, 2600, 3859
MspA1I	CMGCKG	2 cut(s)	2267, 2537
MspCI	CTTAAG	1 cut(s)	1979
MspI	CCGG	7 cut(s)	330, 369, 486, 1500, 4036, 4190, 4383
MspR9I	CCNGG	6 cut(s)	331, 558, 1254, 1852, 2501, 3552
MunI	CAATTG	4 cut(s)	1688, 2271, 3419, 3573
MvaI	CCWGG	5 cut(s)	558, 1254, 1852, 2501, 3552
MvnI	CGCG	1 cut(s)	132
NciI	CCSGG	1 cut(s)	331
NdeI	CATATG	2 cut(s)	179, 3496
NmeAIII	GCCGAG	2 cut(s)	15, 2039
NmuCI	GTSAC	3 cut(s)	1669, 3852, 4385
NruI	TCGCGA	1 cut(s)	132
NsbI	TGCGCA	1 cut(s)	1280
NsiI	ATGCAT	5 cut(s)	358, 1010, 3106, 3322, 3333
NspI	RCATGY	2 cut(s)	2943, 3367
NspV	TTCGAA	1 cut(s)	1446
OliI	CACNNNNGTG	1 cut(s)	2600
PaeR7I	CTCGAG	3 cut(s)	221, 823, 4019
PagI	TCATGA	2 cut(s)	2749, 4296
PciI	ACATGT	1 cut(s)	3363
PciSI	GCTCTTC	1 cut(s)	3537
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 2856
PdmI	GAANNNNTTC	5 cut(s)	1525, 1764, 2757, 4083, 4512
Pfl23II	CGTACG	1 cut(s)	4091
PflFI	GACNNNGTC	1 cut(s)	1315
PflMI	CCANNNNNTGG	4 cut(s)	1610, 1690, 2843, 3227
PfoI	TCCNGGA	1 cut(s)	329
PinAI	ACCGGT	1 cut(s)	4035
PleI	GAGTC	6 cut(s)	380, 815, 1324, 2101, 3007, 4460
PpsI	GAGTC	6 cut(s)	380, 815, 1324, 2101, 3007, 4460
Ppu21I	YACGTR	2 cut(s)	889, 1238
PscI	ACATGT	1 cut(s)	3363
PshBI	ATTAAT	1 cut(s)	2040
PsiI	TTATAA	3 cut(s)	1299, 2922, 3167
Psp124BI	GAGCTC	2 cut(s)	228, 3016
Psp6I	CCWGG	5 cut(s)	556, 1252, 1850, 2499, 3550
PspEI	GGTNACC	1 cut(s)	3410
PspFI	CCCAGC	1 cut(s)	1419
PspGI	CCWGG	5 cut(s)	556, 1252, 1850, 2499, 3550
PspLI	CGTACG	1 cut(s)	4091
PspPI	GGNCC	4 cut(s)	396, 455, 764, 2497
PspXI	VCTCGAGB	2 cut(s)	221, 823
PsrI	GAACNNNNNNTAC	4 cut(s)	2712, 2744, 4031, 4063
PstNI	CAGNNNCTG	4 cut(s)	593, 782, 1706, 2870
PsuI	RGATCY	5 cut(s)	721, 1831, 2539, 3082, 4274
PsyI	GACNNNGTC	1 cut(s)	1315
PvuII	CAGCTG	1 cut(s)	2267
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	8 cut(s)	208, 851, 2469, 2721, 3146, 3368, 3432, 4093
RsaNI	GTAC	8 cut(s)	207, 850, 2468, 2720, 3145, 3367, 3431, 4092
RseI	CAYNNNNRTG	4 cut(s)	23, 1266, 2600, 3859
SacI	GAGCTC	2 cut(s)	228, 3016
SapI	GCTCTTC	1 cut(s)	3537
Sau96I	GGNCC	4 cut(s)	396, 455, 764, 2497
ScaI	AGTACT	1 cut(s)	3432
SchI	GAGTC	6 cut(s)	381, 815, 1325, 2102, 3008, 4460
ScrFI	CCNGG	6 cut(s)	331, 558, 1254, 1852, 2501, 3552
SduI	GDGCHC	9 cut(s)	121, 228, 1438, 1738, 2589, 3016, 3456, 3532, 4260
SfcI	CTRYAG	1 cut(s)	2649
Sfr274I	CTCGAG	3 cut(s)	221, 823, 4019
SfuI	TTCGAA	1 cut(s)	1446
SinI	GGWCC	3 cut(s)	396, 455, 764
SlaI	CTCGAG	3 cut(s)	221, 823, 4019
SmiMI	CAYNNNNRTG	4 cut(s)	23, 1266, 2600, 3859
SnaBI	TACGTA	2 cut(s)	889, 1238
SsiI	CCGC	7 cut(s)	93, 99, 471, 1564, 2537, 2778, 3274
SspI	AATATT	4 cut(s)	1185, 1410, 1600, 2926
SspMI	CTAG	5 cut(s)	405, 1865, 2129, 3564, 4173
SstI	GAGCTC	2 cut(s)	228, 3016
StyD4I	CCNGG	6 cut(s)	329, 556, 1252, 1850, 2499, 3550
TaaI	ACNGT	9 cut(s)	364, 631, 764, 772, 1066, 1507, 2639, 2987, 3787
TaiI	ACGT	6 cut(s)	891, 912, 1240, 2069, 3187, 4060
TatI	WGTACW	4 cut(s)	849, 2719, 3144, 3430
TauI	GCSGC	3 cut(s)	95, 473, 2780
TseFI	GTSAC	3 cut(s)	1669, 3852, 4385
Tsp45I	GTSAC	3 cut(s)	1669, 3852, 4385
TspGWI	ACGGA	5 cut(s)	468, 713, 1038, 4109, 4320
Tth111I	GACNNNGTC	1 cut(s)	1315
Van91I	CCANNNNNTGG	4 cut(s)	1610, 1690, 2843, 3227
Vha464I	CTTAAG	1 cut(s)	1979
VneI	GTGCAC	1 cut(s)	1734
VpaK11BI	GGWCC	3 cut(s)	396, 455, 764
VspI	ATTAAT	1 cut(s)	2040
XagI	CCTNNNNNAGG	1 cut(s)	2702
XapI	RAATTY	8 cut(s)	242, 1359, 1425, 1879, 1889, 2012, 3071, 4378
XceI	RCATGY	2 cut(s)	2943, 3367
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3498, 4320
XhoI	CTCGAG	3 cut(s)	221, 823, 4019
XmiI	GTMKAC	2 cut(s)	4060, 4334
XmnI	GAANNNNTTC	5 cut(s)	1525, 1764, 2757, 4083, 4512
XspI	CTAG	5 cut(s)	405, 1865, 2129, 3564, 4173
ZrmI	AGTACT	1 cut(s)	3432
Zsp2I	ATGCAT	5 cut(s)	358, 1010, 3106, 3322, 3333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.