Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

41539092 .. 41555166

Gene Structure 16075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49886

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4539 bp

ATGGAAGTGCCAATCCTCGGCAGCGATTCACTGAAATGGATTGAGTTCCCTATTCCTTCTTCTAATGCCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCGTTGCTGATACTTGTGCCCCTCTCACTCACGATTGCGCTTCTTCCATCGCCATTGGCGACCCTCCTACACATCTCATATGGAGAATCCACAAGCATCTCCCTCACTCTCTCGAATTACTTGAGCTCTCTGCTAACAAAGAATTTCCAAAACTCGGACTGCGAATCACTTTTCCACAAGCACTCTCTTCCTCCGTTTTTCTTTGCAAAAATGAGATTGATGTCGGTTCCAGGAGCCACCCCTATTTGCTCTATGCATTGACCGTTGCCGGAGTCGCTTACCTTTTGAGACTTGGAACCGTCTCCAGTTATGCTTCCAACTCTGTTATTAGAGAGTTTAGCTTGCATCCCTACGGACCTATAACCAGTGCCGCAGCAACGCCAACCGGATGTCTTGTTGTAGGTCGGAATGATGGCTCACTTGCTTGCTTTCAACTCACACTTGAATCCACTGCTCCTGGTTTTCTGCAAGAGCTACGGGATGATCCAGGAATCGGTAGTTTGTGGGGTTTCATGTCAAGGGGTAGGATGGTAGGCGCTGTGCAGGACTTGGCTATATCTATGGTTCATGGGAAACCACTTATATTCGTTATTCATACGGACGGGGTGTTACGAGTATGGGATATATCATTTCATAGCAGGCTCTTTTCCCATAAGATGAACAGTCTAACAATGGCAGGAGCTGCATTGGTAAGGTTGTGGGTTGGTCAAGCTGACAATGATTCGAGCATAATTCCTTTGGCAATCTTGTACAGACATGATTCGGAAATGAGCTCAGAGACGATCTACGTATATAGCCTCCATTGTAACGTGGGAGACAGAATTGTTTTATCGATGGATCCTTCAGAACAAATTATTCCTATTGAGGAGGATGGATGGATTGATGTCAAACTTATTTCCAACAAGATATGCATATTGAAAAATCAGGGACTGGTGCTTCACAAGTTGTTGCATACAAATGTCAACATGGTAGATGCAGTTTGTTATGCTTTGCAAGAGGACTTCGTTGCAGATCAACTCTTTCAAAGTTCTGAACATTCTTCGGATGACCTTCTTTTGATAACTCATTCAATATTTTCATCTTCAAAGGATCATATTCTACCCGTTGTATCTTCTATTTTCTTACGTAGGCTGCTTCTTCCTGGCATTCATCATAATGCTGCTTTGCGCACAACTTTGTTGGATTATAATAGGCACTGGACTGAGTCAGATTTCCACTCCTTAACTGCTGACGGTTTGAAGAAGGAAATTCTTTCCCTGATTGAACATGAGGGTCTGACTGGTAATTCATCGTCAATATTTTGCTGCTGGAAAATTTTTTGTGCTCGCTATTTCCAGAACTGGTGCAAGAGCAATGCACCATGTGGCCTACTTGTTGATTCCTCAACCGGCACTGTTGGTTTAATTAGAAAGAGTTCAGTATCTCTTTTTCGTTCTTTGGAAGATATTGAGCGGGTTAATGATGGCTCTTTGGATGAACTTGGCAATTTTCCAAGCTTTGGGTTGGATTCATTTGATGAGGCTCGTGATTGTGAGCTACTTGCTGAAATGCTCAGATGTGTCATTAACGTCAGCCAGCAATTGGGCAAAACAGCTTCTGCTATATTTTATGAATCACTCATTAGTGCACCACCAGTTATCTCATCTGAAGACATTATTCCGCGCCTATTGAAGATATTAGAAACTGGATATAGTTCAACAGCCGCAGTGCTTCATATATCAGATCTTGGACCTGATGTTGCCTGGGAGAAAAATCTAGCAGATCACAAAAATTTGAGGAAATTTTCAATTGACATGATGTTGTCTCTTCATGCTTTGCACGAGAAATCTGGCACATGGAGCCGTATTTTGAGTGTGATTGAGAACTATCTAAAGTATCTCATACCTCGGAAAATTATACAAAAATTTGATGCTGTAGTAGCATTGGATATCAATGCCTCCATCTTGGTCCAGGCCATGTCTCAAGTTGCAAAGGTTATGTTTGAGTCTGCACTGGATATTCATCTGTTTCTAAGCTATCTAGTAAGCATTAGTGGGCAGATCAATATGCTACATGATGATATATCCAAAATACAGCTTGAGTTGGTTCCGATGATTCAAGAAATCATTTATGAGTGGCTTCTCTTACATTTCTTTGCCACCACACCATCTGAATCAGCTGCAATTGAAGATTTCAGCTCTCAACTTTCATTGTTACAAATTGATAGCAACACAGGCAGAAGATCATGGAATGAGAAGCTTGGGAAGTGCGAGTTCACTCTGGCTTTTATATTCTTACTTAATGTTAGAAGTTCCTCCAAAGACCAGAGCCACTTTTGTTCAAGAAGCATATCAAATGTTCAGGACATAATTGATTCAATACGAGAATTTGCTAGCTGGATCATGTGGGGCCAGAATAGGGAATCCCTTACTGTCCTGAGGCGTGCAGCGGATCTTGCATTGATCCTGCTAAGGCACGGGCAGTATGATGCTGTTGAGCACCTACTCACTATTGTGGAGGCACATTTACAAAAGGAGAAGACTTCTCATCGTGTTCAAGCTACAGATGGCGGATGGTGCATACTGCATCATCTTTTAGGATGCTGTTATCTTGCTCAAGCACATCGTGGATTACATGGGGTCCTGAAAGAGAGGAAAGTTCATGAAGCTGTATGTTGTTTCTTCAGAGCTGCATCTGGAAATGGCTCAGCTCAGGCTTTACAAAGCTTGCCTCAGGAAGCGGGGTTGCCACATCTTGGCATCGATGGTAGCATATCAGATGCTGCATGGAAGCTCCATTACTATCAGTGGGCAATGCAGATATTTGAGCAATATAATATTAGTGAAGGTGCATGTCAGTTTGCTCTTGCTGCGCTTGAGCAAGTTGAGGAAGCGTATAGTGCAAACACTGAGTCCCATGACAGAGCTCCATTTGATGAATCAGTATCTACCATTAAAGGAAGACTTTGGGCACATGTTTGCAAGTTTACTTTAGATCTCAATCTCTTTTATGATGCGTACTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAGCACATCTGGTTGAGGCGTCTTATAATTGTTCTTTATGAACGTGGTGCCATAAAGATTCTTTGTGGTGGTCAGCTACCATTCATTGGTCTTACAGAGAAGGTAGAACAAGAGCTTCCATGGAAGGCAGAGCGGTCAGACATTTTAGCGAGGCCAAACTTATATAAGTTGCTTTATGCATTTGAAATGCATCGGCATAACTGGCGAAAAGCAGCAAGCTACATGTACCTTTATTCTGCTCGTTTGAGAACTGAAACATCTCTGAAAGGGTACCAGCAATTGTGGCGAGCACTGAAGGAGATACTGAATGGGCTCTCTGCTGCTATCAACGCACTTCATCTTGTTCATCCAGCATATGCTTGGATTGATCCTCTCCTTGAGAGAAATGCTATTCACAATGAGCAGTATCCAAGTAAAAAGGCTAGAATAACAATTGAAGACCAGTCAGCAAGCAATGATGTTGATCCTCAAAGTTGGAAATCTTATATAGATATTCAGAAAATTGAAAACGAGTTTGTGCTTACTTCAGCAGAATATTTGCTTTCACTAGCACATGTCAAATGGACAAATACAGGAACCCAGAAAGCACCATTGGAGTTGGTTGATCTCTTGATCCAGACAAATCTATATGATATGGCATTTACAGTTCTCTTAAGATTCTTCAAAGGTTCAGAGTTAAAGAGGGGATTGGAAAGAGTTTTCTCTGCTATGTCACTAAAATGCTGTCCGCATATAGTTAATTCGTCAAGGGTCGGGGATGATTCCACAACACAGGGTCTTCTGTTGACTTCTTCAAAGGATGAAGTGATCGTTCATGGTTCACCAGATACAAGTTCAGCAAATCAACAATCCAGTGGAATTAATCAATGGGGAACTCTCGAGCTCTATCTTGACCGATATAAAGTCTTCCATGCACGTCTACCATTTATTGTTGCTGAAACTCTTCTTCGTACGGATTCTCAAATCGAACTGCCTCTTTGGTTGGTTAAATTATTCAAGGATGGCAGGAGGGAAAAGACATTGGGGATGACTGGCCAAGAATCAAGTCCGGCATTATTATTTCAACTATATGTTGATTATGGTCGATATAGAGAAGCTACGAATCTGTTGCTTGAGTACATAGGTTCTTTAGCATCCATGAGACCAGCCAACATCATTAATCGTAAAAGACCATTTGGAGTTTGGTTTCCATATACAACAATTCAGCGCCTCTGGTGCCGACTCGAGGAAATGATAAATTCAGGTCACATGGTAGATCAATGTAAGCAGCTCAAGGATTTGCTACATGGAGCTTTGCTGAAACATCTCCAACTGGTAAAAGTGGACTCGGAAGATGCACTCGAGTCATTTCAGAAAATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

1512

Amino Acids

169.5

Weight (kDa)

6.1

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	73 - 531	2.2e-55	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	548 - 742	6.1e-91	NUP160, helical domain
TPR_NUP160_120_M	PF23354	921 - 1172	4.6e-34	NUP160/120 middle TPR
HEAT_Nup120	PF23300	922 - 1071	4.4e-12	Nucleoporin Nup120, HEAT repeats
TPR_Nup160_C	PF23347	1224 - 1504	6e-13	Nup160 C-terminal TPR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1329, 3200
Acc16I	TGCGCA	1 cut(s)	1310
Acc65I	GGTACC	1 cut(s)	3444
AccB1I	GGYRCC	3 cut(s)	3221, 3444, 4389
AccB7I	CCANNNNNTGG	4 cut(s)	1640, 1723, 2876, 3260
AccBSI	CCGCTC	2 cut(s)	1594, 3307
AccI	GTMKAC	1 cut(s)	4093
AccII	CGCG	1 cut(s)	1804
AcoI	YGGCCR	1 cut(s)	4207
AcsI	RAATTY	8 cut(s)	284, 1389, 1455, 1912, 1922, 2045, 2507, 4411
AcuI	CTGAAG	5 cut(s)	969, 1809, 2788, 3488, 3684
AcyI	GRCGYC	1 cut(s)	3193
AdeI	CACNNNGTG	2 cut(s)	1505, 2747
AfaI	GTAC	6 cut(s)	893, 3140, 3401, 3446, 4126, 4292
AfiI	CCNNNNNNNGG	9 cut(s)	17, 296, 635, 1640, 1723, 2539, 2876, 3260, 4399
AflII	CTTAAG	1 cut(s)	3826
AflIII	ACRYGT	3 cut(s)	3094, 3396, 3727
AjiI	CACGTC	1 cut(s)	4091
AjnI	CCWGG	6 cut(s)	371, 598, 628, 1282, 1883, 2091
AjuI	GAANNNNNNNTTGG	2 cut(s)	3749, 3781
AleI	CACNNNNGTG	1 cut(s)	2633
Alw21I	GWGCWC	8 cut(s)	270, 917, 1468, 1771, 2622, 3049, 3466, 4059
Alw26I	GTCTC	7 cut(s)	424, 448, 914, 951, 1950, 2106, 4309
Alw44I	GTGCAC	1 cut(s)	1767
AlwNI	CAGNNNCTG	4 cut(s)	824, 1072, 1739, 2903
Ama87I	CYCGRG	3 cut(s)	4052, 4397, 4514
AoxI	GGCC	5 cut(s)	1507, 2094, 2530, 3326, 4207
ApaLI	GTGCAC	1 cut(s)	1767
ApoI	RAATTY	8 cut(s)	284, 1389, 1455, 1912, 1922, 2045, 2507, 4411
ArsI	GACNNNNNNTTYG	2 cut(s)	3017, 3049
AseI	ATTAAT	2 cut(s)	4035, 4332
Asp700I	GAANNNNTTC	2 cut(s)	1555, 4116
Asp718I	GGTACC	1 cut(s)	3444
AspLEI	GCGC	6 cut(s)	182, 680, 1311, 1806, 2995, 4383
AspS9I	GGNCC	5 cut(s)	497, 1871, 2089, 2530, 2761
AsuHPI	GGTGA	1 cut(s)	3987
AsuNHI	GCTAGC	1 cut(s)	2513
AvaI	CYCGRG	3 cut(s)	4052, 4397, 4514
AvaII	GGWCC	4 cut(s)	497, 1871, 2089, 2761
AxyI	CCTNAGG	2 cut(s)	2558, 2853
BaeGI	GKGCMC	3 cut(s)	163, 1771, 3094
BalI	TGGCCA	1 cut(s)	4209
BamHI	GGATCC	1 cut(s)	979
BanI	GGYRCC	3 cut(s)	3221, 3444, 4389
BanII	GRGCYC	5 cut(s)	270, 917, 3049, 3489, 4059
BarI	GAAGNNNNNNTAC	2 cut(s)	2903, 2935
BauI	CACGAG	2 cut(s)	1665, 1961
BbsI	GAAGAC	6 cut(s)	1797, 2666, 3088, 3618, 3944, 4072
Bbv12I	GWGCWC	8 cut(s)	270, 917, 1468, 1771, 2622, 3049, 3466, 4059
BceAI	ACGGC	2 cut(s)	128, 1968
BcgI	CGANNNNNNTGC	2 cut(s)	4264, 4298
BciT130I	CCWGG	6 cut(s)	373, 600, 630, 1284, 1885, 2093
BciVI	GTATCC	1 cut(s)	3591
BcoDI	GTCTC	7 cut(s)	424, 448, 914, 951, 1950, 2106, 4309
BfaI	CTAG	5 cut(s)	1898, 2162, 2514, 3597, 3722
BfmI	CTRYAG	2 cut(s)	2055, 2682
BfoI	RGCGCY	2 cut(s)	681, 4384
BfrI	CTTAAG	1 cut(s)	3826
BfuI	GTATCC	1 cut(s)	3591
BglII	AGATCT	2 cut(s)	1864, 3115
BlpI	GCTNAGC	1 cut(s)	2827
Bme1390I	CCNGG	6 cut(s)	373, 600, 630, 1284, 1885, 2093
Bme18I	GGWCC	4 cut(s)	497, 1871, 2089, 2761
BmeT110I	CYCGRG	3 cut(s)	4052, 4397, 4514
BmgBI	CACGTC	1 cut(s)	4091
BmgT120I	GGNCC	5 cut(s)	497, 1871, 2089, 2530, 2761
BmrFI	CCNGG	6 cut(s)	373, 600, 630, 1284, 1885, 2093
BmtI	GCTAGC	1 cut(s)	2517
BpiI	GAAGAC	6 cut(s)	1797, 2666, 3088, 3618, 3944, 4072
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	2 cut(s)	2591, 2832
Bpu1102I	GCTNAGC	1 cut(s)	2827
BpuEI	CTTGAG	8 cut(s)	284, 2088, 2240, 2721, 3017, 3572, 4307, 4430
Bsa29I	ATCGAT	2 cut(s)	974, 2883
BsaAI	YACGTR	2 cut(s)	931, 1268
BsaBI	GATNNNNATC	3 cut(s)	2142, 3120, 3636
BsaHI	GRCGYC	1 cut(s)	3193
BsaI	GGTCTC	1 cut(s)	4309
BsaJI	CCNNGG	4 cut(s)	16, 1884, 2027, 3293
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	9 cut(s)	17, 296, 635, 1640, 1723, 2539, 2876, 3260, 4399
Bse118I	RCCGGY	1 cut(s)	1529
Bse21I	CCTNAGG	2 cut(s)	2558, 2853
Bse3DI	GCAATG	3 cut(s)	1501, 2940, 3634
Bse8I	GATNNNNATC	3 cut(s)	2142, 3120, 3636
BseBI	CCWGG	6 cut(s)	373, 600, 630, 1284, 1885, 2093
BseCI	ATCGAT	2 cut(s)	974, 2883
BseDI	CCNNGG	4 cut(s)	16, 1884, 2027, 3293
BseJI	GATNNNNATC	3 cut(s)	2142, 3120, 3636
BseLI	CCNNNNNNNGG	9 cut(s)	17, 296, 635, 1640, 1723, 2539, 2876, 3260, 4399
BseMI	GCAATG	3 cut(s)	1501, 2940, 3634
BseMII	CTCAG	8 cut(s)	930, 1335, 1708, 2549, 2841, 2846, 2867, 3021
BseRI	GAGGAG	2 cut(s)	1022, 3182
BseSI	GKGCMC	3 cut(s)	163, 1771, 3094
BsgI	GTGCAG	3 cut(s)	704, 2115, 2586
Bsh1236I	CGCG	1 cut(s)	1804
BshFI	GGCC	5 cut(s)	1509, 2096, 2532, 3328, 4209
BshNI	GGYRCC	3 cut(s)	3221, 3444, 4389
BshVI	ATCGAT	2 cut(s)	974, 2883
BsiHKAI	GWGCWC	8 cut(s)	270, 917, 1468, 1771, 2622, 3049, 3466, 4059
BsiHKCI	CYCGRG	3 cut(s)	4052, 4397, 4514
BsiSI	CCGG	4 cut(s)	411, 528, 1530, 4223
BsiWI	CGTACG	1 cut(s)	4124
BslFI	GGGAC	2 cut(s)	1083, 3019
BslI	CCNNNNNNNGG	9 cut(s)	17, 296, 635, 1640, 1723, 2539, 2876, 3260, 4399
BsmAI	GTCTC	7 cut(s)	424, 448, 914, 951, 1950, 2106, 4309
BsmBI	CGTCTC	2 cut(s)	448, 914
BsmFI	GGGAC	2 cut(s)	1083, 3019
BsmI	GAATGC	1 cut(s)	1287
BsnI	GGCC	5 cut(s)	1509, 2096, 2532, 3328, 4209
Bso31I	GGTCTC	1 cut(s)	4309
BsoBI	CYCGRG	3 cut(s)	4052, 4397, 4514
Bsp1407I	TGTACA	1 cut(s)	891
Bsp1720I	GCTNAGC	1 cut(s)	2827
Bsp19I	CCATGG	1 cut(s)	3293
BspANI	GGCC	5 cut(s)	1509, 2096, 2532, 3328, 4209
BspCNI	CTCAG	8 cut(s)	929, 1336, 1707, 2550, 2840, 2845, 2866, 3022
BspDI	ATCGAT	2 cut(s)	974, 2883
BspFNI	CGCG	1 cut(s)	1804
BspHI	TCATGA	1 cut(s)	2782
BspOI	GCTAGC	1 cut(s)	2517
BspT107I	GGYRCC	3 cut(s)	3221, 3444, 4389
BspTI	CTTAAG	1 cut(s)	3826
BspTNI	GGTCTC	1 cut(s)	4309
BsrBI	CCGCTC	2 cut(s)	1594, 3307
BsrDI	GCAATG	3 cut(s)	1501, 2940, 3634
BsrFI	RCCGGY	1 cut(s)	1529
BsrGI	TGTACA	1 cut(s)	891
BssAI	RCCGGY	1 cut(s)	1529
BssECI	CCNNGG	4 cut(s)	16, 1884, 2027, 3293
BssNI	GRCGYC	1 cut(s)	3193
BssSI	CACGAG	2 cut(s)	1665, 1961
BssT1I	CCWWGG	1 cut(s)	3293
Bst2BI	CACGAG	2 cut(s)	1665, 1961
Bst2UI	CCWGG	6 cut(s)	373, 600, 630, 1284, 1885, 2093
Bst4CI	ACNGT	8 cut(s)	406, 442, 806, 1376, 1537, 2554, 3143, 3820
Bst6I	CTCTTC	3 cut(s)	334, 1953, 4122
BstACI	GRCGYC	1 cut(s)	3193
BstAFI	CTTAAG	1 cut(s)	3826
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstAUI	TGTACA	1 cut(s)	891
BstBAI	YACGTR	2 cut(s)	931, 1268
BstDSI	CCRYGG	1 cut(s)	3293
BstFNI	CGCG	1 cut(s)	1804
BstH2I	RGCGCY	2 cut(s)	681, 4384
BstHHI	GCGC	6 cut(s)	182, 680, 1311, 1806, 2995, 4383
BstMAI	GTCTC	7 cut(s)	424, 448, 914, 951, 1950, 2106, 4309
BstNI	CCWGG	6 cut(s)	373, 600, 630, 1284, 1885, 2093
BstNSI	RCATGY	4 cut(s)	2976, 3098, 3400, 3731
BstSCI	CCNGG	6 cut(s)	371, 598, 628, 1282, 1883, 2091
BstSFI	CTRYAG	2 cut(s)	2055, 2682
BstSLI	GKGCMC	3 cut(s)	163, 1771, 3094
BstSNI	TACGTA	2 cut(s)	931, 1268
BstUI	CGCG	1 cut(s)	1804
BstV2I	GAAGAC	6 cut(s)	1797, 2666, 3088, 3618, 3944, 4072
BstX2I	RGATCY	4 cut(s)	979, 1864, 2572, 3115
BstYI	RGATCY	4 cut(s)	979, 1864, 2572, 3115
Bsu15I	ATCGAT	2 cut(s)	974, 2883
Bsu36I	CCTNAGG	2 cut(s)	2558, 2853
BsuI	GTATCC	1 cut(s)	3591
BsuRI	GGCC	5 cut(s)	1509, 2096, 2532, 3328, 4209
BsuTUI	ATCGAT	2 cut(s)	974, 2883
BtgI	CCRYGG	1 cut(s)	3293
BtgZI	GCGATG	1 cut(s)	175
BtrI	CACGTC	1 cut(s)	4091
BtsI	GCAGTG	2 cut(s)	591, 1854
CaiI	CAGNNNCTG	4 cut(s)	824, 1072, 1739, 2903
CciI	TCATGA	1 cut(s)	2782
CfoI	GCGC	6 cut(s)	182, 680, 1311, 1806, 2995, 4383
Cfr10I	RCCGGY	1 cut(s)	1529
Cfr13I	GGNCC	5 cut(s)	497, 1871, 2089, 2530, 2761
ClaI	ATCGAT	2 cut(s)	974, 2883
CseI	GACGC	1 cut(s)	3182
Csp6I	GTAC	6 cut(s)	892, 3139, 3400, 3445, 4125, 4291
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviQI	GTAC	6 cut(s)	892, 3139, 3400, 3445, 4125, 4291
DraIII	CACNNNGTG	2 cut(s)	1505, 2747
EaeI	YGGCCR	1 cut(s)	4207
Eam1104I	CTCTTC	3 cut(s)	334, 1953, 4122
EarI	CTCTTC	3 cut(s)	334, 1953, 4122
EciI	GGCGGA	1 cut(s)	2706
Ecl136II	GAGCTC	4 cut(s)	268, 915, 3047, 4057
Eco105I	TACGTA	2 cut(s)	931, 1268
Eco130I	CCWWGG	1 cut(s)	3293
Eco24I	GRGCYC	5 cut(s)	270, 917, 3049, 3489, 4059
Eco31I	GGTCTC	1 cut(s)	4309
Eco32I	GATATC	1 cut(s)	2071
Eco47I	GGWCC	4 cut(s)	497, 1871, 2089, 2761
Eco53kI	GAGCTC	4 cut(s)	268, 915, 3047, 4057
Eco57I	CTGAAG	5 cut(s)	969, 1809, 2788, 3488, 3684
Eco81I	CCTNAGG	2 cut(s)	2558, 2853
Eco88I	CYCGRG	3 cut(s)	4052, 4397, 4514
EcoICRI	GAGCTC	4 cut(s)	268, 915, 3047, 4057
EcoO109I	RGGNCCY	1 cut(s)	2761
EcoRII	CCWGG	6 cut(s)	371, 598, 628, 1282, 1883, 2091
EcoRV	GATATC	1 cut(s)	2071
EcoT14I	CCWWGG	1 cut(s)	3293
EcoT22I	ATGCAT	4 cut(s)	400, 1055, 3355, 3366
EcoT38I	GRGCYC	5 cut(s)	270, 917, 3049, 3489, 4059
ErhI	CCWWGG	1 cut(s)	3293
Esp3I	CGTCTC	2 cut(s)	448, 914
FalI	AAGNNNNNCTT	2 cut(s)	3069, 3101
FaqI	GGGAC	2 cut(s)	1083, 3019
FauI	CCCGC	2 cut(s)	1587, 2854
FauNDI	CATATG	2 cut(s)	221, 3529
FblI	GTMKAC	1 cut(s)	4093
FriOI	GRGCYC	5 cut(s)	270, 917, 3049, 3489, 4059
FspBI	CTAG	5 cut(s)	1898, 2162, 2514, 3597, 3722
FspI	TGCGCA	1 cut(s)	1310
GlaI	GCGC	6 cut(s)	181, 679, 1310, 1805, 2994, 4382
GsuI	CTGGAG	1 cut(s)	430
HaeII	RGCGCY	2 cut(s)	681, 4384
HaeIII	GGCC	5 cut(s)	1509, 2096, 2532, 3328, 4209
HapII	CCGG	4 cut(s)	411, 528, 1530, 4223
HgaI	GACGC	1 cut(s)	3182
HhaI	GCGC	6 cut(s)	182, 680, 1311, 1806, 2995, 4383
Hin1I	GRCGYC	1 cut(s)	3193
Hin6I	GCGC	6 cut(s)	180, 678, 1309, 1804, 2993, 4381
HinP1I	GCGC	6 cut(s)	180, 678, 1309, 1804, 2993, 4381
HincII	GTYRAC	2 cut(s)	1105, 3960
HindII	GTYRAC	2 cut(s)	1105, 3960
HindIII	AAGCTT	3 cut(s)	1636, 2378, 2845
HpaII	CCGG	4 cut(s)	411, 528, 1530, 4223
HphI	GGTGA	1 cut(s)	3987
Hpy166II	GTNNAC	8 cut(s)	1105, 1769, 2397, 3108, 3960, 3995, 4094, 4498
Hpy8I	GTNNAC	8 cut(s)	1105, 1769, 2397, 3108, 3960, 3995, 4094, 4498
HpyAV	CCTTC	8 cut(s)	66, 993, 1202, 1378, 2960, 3268, 3292, 3463
HpyCH4III	ACNGT	8 cut(s)	406, 442, 806, 1376, 1537, 2554, 3143, 3820
HpyCH4IV	ACGT	6 cut(s)	930, 951, 1267, 1710, 3217, 4090
HpySE526I	ACGT	6 cut(s)	930, 951, 1267, 1710, 3217, 4090
Hsp92I	GRCGYC	1 cut(s)	3193
HspAI	GCGC	6 cut(s)	180, 678, 1309, 1804, 2993, 4381
KpnI	GGTACC	1 cut(s)	3448
LmnI	GCTCC	7 cut(s)	375, 601, 821, 1980, 2919, 3052, 4463
MaeI	CTAG	5 cut(s)	1898, 2162, 2514, 3597, 3722
MaeII	ACGT	6 cut(s)	930, 951, 1267, 1710, 3217, 4090
MaeIII	GTNAC	5 cut(s)	750, 947, 2334, 3885, 4418
MbiI	CCGCTC	2 cut(s)	1594, 3307
MfeI	CAATTG	5 cut(s)	1721, 1929, 2304, 3452, 3606
MflI	RGATCY	4 cut(s)	979, 1864, 2572, 3115
MlsI	TGGCCA	1 cut(s)	4209
MluNI	TGGCCA	1 cut(s)	4209
MlyI	GAGTC	7 cut(s)	423, 1355, 2135, 3041, 4389, 4493, 4526
MmeI	TCCRAC	7 cut(s)	483, 527, 1065, 1302, 1626, 3629, 4507
Mox20I	TGGCCA	1 cut(s)	4209
Mph1103I	ATGCAT	4 cut(s)	400, 1055, 3355, 3366
MroXI	GAANNNNTTC	2 cut(s)	1555, 4116
MscI	TGGCCA	1 cut(s)	4209
MslI	CAYNNNNRTG	5 cut(s)	34, 1098, 1296, 2633, 3892
Msp20I	TGGCCA	1 cut(s)	4209
MspA1I	CMGCKG	2 cut(s)	2300, 2570
MspCI	CTTAAG	1 cut(s)	3826
MspI	CCGG	4 cut(s)	411, 528, 1530, 4223
MspR9I	CCNGG	6 cut(s)	373, 600, 630, 1284, 1885, 2093
MunI	CAATTG	5 cut(s)	1721, 1929, 2304, 3452, 3606
Mva1269I	GAATGC	1 cut(s)	1287
MvaI	CCWGG	6 cut(s)	373, 600, 630, 1284, 1885, 2093
MvnI	CGCG	1 cut(s)	1804
NcoI	CCATGG	1 cut(s)	3293
NdeI	CATATG	2 cut(s)	221, 3529
NheI	GCTAGC	1 cut(s)	2513
NmuCI	GTSAC	2 cut(s)	3885, 4418
NsbI	TGCGCA	1 cut(s)	1310
NsiI	ATGCAT	4 cut(s)	400, 1055, 3355, 3366
NspI	RCATGY	4 cut(s)	2976, 3098, 3400, 3731
OliI	CACNNNNGTG	1 cut(s)	2633
PaeR7I	CTCGAG	3 cut(s)	4052, 4397, 4514
PagI	TCATGA	1 cut(s)	2782
PciI	ACATGT	3 cut(s)	3094, 3396, 3727
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	1287
PdmI	GAANNNNTTC	2 cut(s)	1555, 4116
Pfl23II	CGTACG	1 cut(s)	4124
PflFI	GACNNNGTC	1 cut(s)	1345
PflMI	CCANNNNNTGG	4 cut(s)	1640, 1723, 2876, 3260
PfoI	TCCNGGA	2 cut(s)	371, 628
PleI	GAGTC	7 cut(s)	422, 1354, 2134, 3040, 4389, 4493, 4525
PpsI	GAGTC	7 cut(s)	422, 1354, 2134, 3040, 4389, 4493, 4525
Ppu21I	YACGTR	2 cut(s)	931, 1268
PpuMI	RGGWCCY	1 cut(s)	2761
PscI	ACATGT	3 cut(s)	3094, 3396, 3727
PshBI	ATTAAT	2 cut(s)	4035, 4332
PsiI	TTATAA	2 cut(s)	1329, 3200
Psp124BI	GAGCTC	4 cut(s)	270, 917, 3049, 4059
Psp5II	RGGWCCY	1 cut(s)	2761
Psp6I	CCWGG	6 cut(s)	371, 598, 628, 1282, 1883, 2091
PspGI	CCWGG	6 cut(s)	371, 598, 628, 1282, 1883, 2091
PspLI	CGTACG	1 cut(s)	4124
PspPI	GGNCC	5 cut(s)	497, 1871, 2089, 2530, 2761
PspPPI	RGGWCCY	1 cut(s)	2761
PspXI	VCTCGAGB	2 cut(s)	4397, 4514
PstNI	CAGNNNCTG	4 cut(s)	824, 1072, 1739, 2903
PsuI	RGATCY	4 cut(s)	979, 1864, 2572, 3115
PsyI	GACNNNGTC	1 cut(s)	1345
PvuII	CAGCTG	1 cut(s)	2300
RsaI	GTAC	6 cut(s)	893, 3140, 3401, 3446, 4126, 4292
RsaNI	GTAC	6 cut(s)	892, 3139, 3400, 3445, 4125, 4291
RseI	CAYNNNNRTG	5 cut(s)	34, 1098, 1296, 2633, 3892
SacI	GAGCTC	4 cut(s)	270, 917, 3049, 4059
Sau96I	GGNCC	5 cut(s)	497, 1871, 2089, 2530, 2761
SchI	GAGTC	7 cut(s)	423, 1355, 2135, 3041, 4389, 4493, 4526
ScrFI	CCNGG	6 cut(s)	373, 600, 630, 1284, 1885, 2093
SfcI	CTRYAG	2 cut(s)	2055, 2682
Sfr274I	CTCGAG	3 cut(s)	4052, 4397, 4514
SinI	GGWCC	4 cut(s)	497, 1871, 2089, 2761
SlaI	CTCGAG	3 cut(s)	4052, 4397, 4514
SmiMI	CAYNNNNRTG	5 cut(s)	34, 1098, 1296, 2633, 3892
SnaBI	TACGTA	2 cut(s)	931, 1268
SspI	AATATT	4 cut(s)	1215, 1440, 2959, 3710
SspMI	CTAG	5 cut(s)	1898, 2162, 2514, 3597, 3722
SstI	GAGCTC	4 cut(s)	270, 917, 3049, 4059
StyD4I	CCNGG	6 cut(s)	371, 598, 628, 1282, 1883, 2091
StyI	CCWWGG	1 cut(s)	3293
TaaI	ACNGT	8 cut(s)	406, 442, 806, 1376, 1537, 2554, 3143, 3820
TaiI	ACGT	6 cut(s)	933, 954, 1270, 1713, 3220, 4093
TaqI	TCGA	9 cut(s)	255, 866, 974, 2883, 4053, 4140, 4258, 4398, 4515
TaqII	GACCGA	1 cut(s)	4083
TatI	WGTACW	2 cut(s)	891, 4290
TauI	GCSGC	3 cut(s)	71, 515, 1847
TseFI	GTSAC	2 cut(s)	3885, 4418
Tsp45I	GTSAC	2 cut(s)	3885, 4418
TspGWI	ACGGA	4 cut(s)	325, 510, 755, 4142
Tth111I	GACNNNGTC	1 cut(s)	1345
Van91I	CCANNNNNTGG	4 cut(s)	1640, 1723, 2876, 3260
Vha464I	CTTAAG	1 cut(s)	3826
VneI	GTGCAC	1 cut(s)	1767
VpaK11BI	GGWCC	4 cut(s)	497, 1871, 2089, 2761
VspI	ATTAAT	2 cut(s)	4035, 4332
XapI	RAATTY	8 cut(s)	284, 1389, 1455, 1912, 1922, 2045, 2507, 4411
XceI	RCATGY	4 cut(s)	2976, 3098, 3400, 3731
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3531, 4353
XhoI	CTCGAG	3 cut(s)	4052, 4397, 4514
XmiI	GTMKAC	1 cut(s)	4093
XmnI	GAANNNNTTC	2 cut(s)	1555, 4116
XspI	CTAG	5 cut(s)	1898, 2162, 2514, 3597, 3722
Zsp2I	ATGCAT	4 cut(s)	400, 1055, 3355, 3366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.