Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

40297058 .. 40313309

Gene Structure 16252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4482 bp

ATGGAAGTGCCAATCCTCGGCAGCGATTCACTGAAATGGATTGAGTTCCCTATTCCTTCTTCTAATGCCGCCACCGCCACCGCCACCGCCGATGCTGATACTTGTGCCCCTCTCACTCACGATTGCGCTTCTTCCATCGCCATTGGCGACCCTCCTACACATCTCATATGGAGAATCCACAAGCATCTCCCTCACTCTCTCGAATTACTTGAGCTCTCTGCTGACAAAGAATTTCCAAAACTCGGACTGCGAATCACTTTTCCACAAGCACTCTCTTCCTCCGTTTTTCTTTGCAAAAATGAGATTGATGTCGGTTCCAGGAGCCACCCCTATTTGCTCTATGCATTGACCGTCGCCGGAGTCGCTTACCTTTTGAGACTTGGAACTGTCTCTAGTTATGCTTCCAACTCTGTTATTAGAGAGTTTAGCTTGCATCCCTACGGACCTATAACCAGTGCCGCAGCAACGCCAACCGGATGTCTTGTTGTAGGTCGGAATGACGGCTCACTTGCTTGCTTTCAACTCACACTTGAATCCACTGCTCCTGGTTTTCTGCAAGAGCTACGGGATGATCCAGGAATCGGTAGTTTGTGGGGTTTCATGTCAAGGGGTAGGATGGTAGGCGCTGTGCAGGACTTGGCTATATCTATGGTTCATGGGAAACCACTTATATTCGTTATTCATACGGACGGGGTGTTACGAGTATGGGATATATCATTTCATAGCAGGCTCTTTTCCCATAAGATGAACAGTCTAACAATGGCAGGAGCTGCATTGGTAAGGTTGTGGGTTGGTCAAGCTGACAATGATTCGAGCATAATTCCTTTGGCAATCTTGTACAGACATGATTCGGAAATGAGCTCAGAGACGATCTACGTATATAGCCTCCATTGTAACGTGGGAGACAGAATTGTTTTATCGATGGATCCTTCAGAACAAATTATTCCTATTGAGGAGGATGGATGGATTGATGTCAAACTTATTTCCAACAAGATATGCATATTGAAAAATCAGGGACTGGTGCTTCACAAGTTGTTGCATACAAATGTCAACATGGTAGATGCAGTTTGTTATGCTTTGCAAGAGGACTTCGTTGCAGATCAACTCTTTCAAAGTTCTGAACATTCTTCGGATGACCTTCTTTTGATAACTCATTCAATATTTTCATCTTCAAAGGATCATATTCTACCCGTTGTATCTTCTATTTTCTTACGTAGGCTGCTTCTTCCTGGCATTCATCATAATGCTGCTTTGCGCACAACTTTGTTGGATTATAATAGGCACTGGACTGAGTCAGATTTCCACTCCTTAACTGCTGACGGTTTGAAGAAGGAAATTCTTTCCCTGATTGAACATGAGGGTCTGACTGGTAATTCATCGTCAATATTTTGCTGCTGGAAAATTTTTTGTGCTCGCTATTTCCAGAACTGGTGCAAGAGCAATGCACCATGTGGCCTACTTGTTGATTCCTCAACCGGCACTGTTGGTTTAATTAGAAAGAGTTCAGTATCTTTTTTTCGTTCTTTGGAGGATATTGAGCGGGTTAATGATGGCTCTTTGGATGAACTTGGCAATATTCCAAGCTTTGGGTTGGATTCATTTGGCAAGGCTGATCGTAAGCTACTTGCTGAAATGCTCAGGTGTGTCACTAATGTCAGCCAGCAATTGGGCAAAACAGCTTCTGCCATATTTTATGAATCACTCATTAGTGCACCACCAGTTATCTCATCTGAAGACATTATTCCGCGCCTATTGAAGATATTAGAAACTGGATATAGTTCAACAGCCGCAGTGCTTCATATATCAGATCTTGGACCTGATGTTGCCTGGGAGAAAAATCTAGCAGATCACAAAAATTTGAGGAAATTTTCAATTGACATGATGTTGTCTCTTCATGCTTTGCACGAGAAATCTGGCACATGGAGCCGTATTTTGAGTGTGATTGAGAACTATCTAAAGTATCTCATACCTCGGAAAATTATACAAAAATTTGATGCTGTAGTAGCATTGGATATCAATGCCTCCATCTTGGTCCAGGCCATGTCTCAAGTTGCAAAGGTTATGTTTGAGTCTGCACTGGATATTCATCTGTTTCTAAGCTATCTAGTAAGCATTAGTGGGCAGATCAATATGCTACATGATGATATATCCAAAATACAGCTTGAGTTGGTTCCGATGATTCAAGAAATCATTTATGAGTGGCTTCTCTTACATTTCTTTGCCACCACACCATCTGAATCAGCTGCAATTGAAGATTTCAGCTCTCAACTTTCATTGTTACAAATTGATAACAACACAGGCAGAAGATCATGGAATGAGAAGCTTGGGAAGTGCGAGTTCACTCTGGCTTTTATATTCTTACTTAATGTTAGAAGTTCCTCCAAAGACCAGAGCCACTTTTGTTCAAGAAGCATATCAAATGTTCAGGACATAATTGATTCAATACGAGAATTTGCTAGCTGGATCATGTGGGGCCAGAATAGGGAATCCCTTACTGTCCTGAGGCGTGCAGCGGATCTTGCATTGATCCTGCTAAGGCACGGGCAGTATGATGCTGTTGAGCACTTACTCACTATTGTGGAGGCACATTTAGAAAAGGAGGAGACTTCTCACGGTATTAGAGCTACAGATGGTGGATGGTGCATACTTCATCATCTTTTAGGATGCTGCTTCCTTGCTCAGGCACATCGTGGAGTACATGGGGTTCTGAAAGAGAGGAAAGTTCATGAAGCTATTCGTTGTTTCTTCAGAGCTGCATCTGGAAATGGCTCAGCTCAGGCTTTACAAAGCTTGCCTCAGGAAGCGGGGTTGCCACATCTTGGCATCGATGGTAGCATATCAGATGCTGCATGGAAGCTCCATTACTATCAGTGGGCAATGCAGATATTTGAGCAATATAATATTAGTGAAGGTGCATGTCAGTTTGCTCTTGCTGCCCTTGAGCAAGTTGAGGAAGCGTATAGTGCAAACACTGAGTCCCATGACAGAGCTCCATTTGATGAATCAGTATCTACCATTAAAGGAAGACTTTGGGCACATGTTTGCAAGTTTACTTTAGATCTCAATCTCTTTTATGATGCGTACTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAGCACATCTGGTTGAGGCGTCTTATAATTGTTCTTTATGAACGTGGTGCCATAAAGATTCTTTGTGGTGGTCAGCTACCATTCATTGGTCTTACAGAGAAGGTAGAACAAGAGCTTGCATGGAAGGCAGAGCGGTCAGACATTTTAGCGAGGCCAAACTTATATAAGTTGCTTTATGCATTTGAAATGCATCGGCATAACTGGCGAAAAGCAGCAAGCTACATGTACCTTTATTCTGCTCGTTTGAGAACTGAAACATCTCTGAAAGGGTACCAGCAATTGTGGCGAGCACTGAAGGAGATACTGAATGGGCTCTCTGCTGCTATCAACGCACTTCATCTTGTTCATCCAGCATATGCTTGGATTGATCCTCTCCTTGAGAGAAATGCTATTCACAATGAGCAGTATCCAAGTAAAAAGGCTAGAATAACAATTGAAGACCAGTCAGCAAGCAATGATGTTGATGCTCAAAGTTGGAAATCTTATATAGATATTCAGAAAATTGAAAACGAGTTTGTGCTTACTTCAGCAGAATATTTGCTTTCACTAGCACATGTCAAATGGACAAATACAGGAACCCAGAAAGCACCATTGGAGTTGGTTGATCTCTTGATCCAGACAAATCTATATGATATGGCATTTACAGTTCTCTTAAGATTCTTCAAAGGTTCAGAGTTAAAGAGGGGATTGGAAAGAGTTTTCTCTGCTATGTCACTAAAATGCTGTCCGCATATAGTTAATTCTTCAAGGGTCGGGGATGATTCCACAACACAGGGTCTTCTGTTGACTTCTTCAAAGGATGAAGTGATCGTTCATGGTTCACCAGATACAAGTTCAGCAAATCAACAATCCAGTGGAATTAATCAATGGGGAACTCTCGAGCTCTATCTTGACCGATATAAAGTCTTCCATGCACGTCTACCATTTATTGTTGCTGAAACTCTTCTTCGTACGGATTCTCAAATCGAACTGCCTCTTTGGTTGGTTAAATTATTCAAGGATGGCAGGAGGGAAAAGACATTGGGGATGACTGGCCAAGAATCAAGTCCGGCATTATTATTTCAACTATATGTTGATTATGGTCGATATAGAGAAGCTACGAATATGTTGCTTGAGTACATAGGTTCTTTAGCATCCATGAGACCAGCCAACATCATTAATCGTAAAAGACCATTTGGAGTTTGGTTTCCATATACAACAATTCAGCGCCTCTGGTGCCGACTTGAGGAAATGATAAATTCAGGTCACATGGTAGATCAATGTAAGCAGCTCAAGGATTTGCTACATGGAGCTTTGCTGAAACATCTCCAACTGGTAAAAGTGGACTCGGAAGATGCACTTGAGTCATTTCAGAAAATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

1493

Amino Acids

167.77

Weight (kDa)

6.13

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	55 - 513	6.2e-56	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	536 - 723	1.2e-89	NUP160, helical domain
TPR_NUP160_120_M	PF23354	902 - 1153	1.5e-34	NUP160/120 middle TPR
HEAT_Nup120	PF23300	903 - 1052	1.2e-12	Nucleoporin Nup120, HEAT repeats
TPR_Nup160_C	PF23347	1205 - 1485	1.7e-12	Nup160 C-terminal TPR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1275, 3143
Acc16I	TGCGCA	1 cut(s)	1256
Acc65I	GGTACC	1 cut(s)	3387
AccB1I	GGYRCC	3 cut(s)	3164, 3387, 4332
AccB7I	CCANNNNNTGG	4 cut(s)	1586, 1666, 2819, 3203
AccBSI	CCGCTC	2 cut(s)	1540, 3250
AccI	GTMKAC	1 cut(s)	4036
AccII	CGCG	1 cut(s)	1747
AclWI	GGATC	9 cut(s)	566, 920, 933, 1185, 2471, 2521, 2523, 3479, 3724
AcoI	YGGCCR	1 cut(s)	4150
AcsI	RAATTY	8 cut(s)	230, 1335, 1401, 1855, 1865, 1988, 2450, 4354
AcuI	CTGAAG	5 cut(s)	915, 1752, 2731, 3431, 3627
AcyI	GRCGYC	1 cut(s)	3136
AdeI	CACNNNGTG	2 cut(s)	1451, 2690
AfaI	GTAC	7 cut(s)	839, 2697, 3083, 3344, 3389, 4069, 4235
AflII	CTTAAG	1 cut(s)	3769
AflIII	ACRYGT	3 cut(s)	3037, 3339, 3670
AjiI	CACGTC	1 cut(s)	4034
AjnI	CCWGG	6 cut(s)	317, 544, 574, 1228, 1826, 2034
AjuI	GAANNNNNNNTTGG	2 cut(s)	3692, 3724
AleI	CACNNNNGTG	1 cut(s)	2576
Alw21I	GWGCWC	8 cut(s)	216, 863, 1414, 1714, 2565, 2992, 3409, 4002
Alw26I	GTCTC	8 cut(s)	370, 394, 860, 897, 1893, 2049, 2597, 4252
Alw44I	GTGCAC	1 cut(s)	1710
AlwI	GGATC	9 cut(s)	566, 920, 933, 1185, 2471, 2521, 2523, 3479, 3724
AlwNI	CAGNNNCTG	4 cut(s)	770, 1018, 1682, 2846
Ama87I	CYCGRG	1 cut(s)	3995
AoxI	GGCC	5 cut(s)	1453, 2037, 2473, 3269, 4150
ApaLI	GTGCAC	1 cut(s)	1710
ApoI	RAATTY	8 cut(s)	230, 1335, 1401, 1855, 1865, 1988, 2450, 4354
ArsI	GACNNNNNNTTYG	2 cut(s)	2960, 2992
AseI	ATTAAT	2 cut(s)	3978, 4275
Asp700I	GAANNNNTTC	3 cut(s)	1501, 2733, 4059
Asp718I	GGTACC	1 cut(s)	3387
AspLEI	GCGC	5 cut(s)	128, 626, 1257, 1749, 4326
AspS9I	GGNCC	4 cut(s)	443, 1814, 2032, 2473
AsuHPI	GGTGA	1 cut(s)	3930
AsuNHI	GCTAGC	1 cut(s)	2456
AvaI	CYCGRG	1 cut(s)	3995
AvaII	GGWCC	3 cut(s)	443, 1814, 2032
AxyI	CCTNAGG	2 cut(s)	2501, 2796
BaeGI	GKGCMC	3 cut(s)	109, 1714, 3037
BalI	TGGCCA	1 cut(s)	4152
BamHI	GGATCC	1 cut(s)	925
BanI	GGYRCC	3 cut(s)	3164, 3387, 4332
BanII	GRGCYC	5 cut(s)	216, 863, 2992, 3432, 4002
BarI	GAAGNNNNNNTAC	2 cut(s)	2846, 2878
BauI	CACGAG	1 cut(s)	1904
BbsI	GAAGAC	5 cut(s)	1740, 3031, 3561, 3887, 4015
Bbv12I	GWGCWC	8 cut(s)	216, 863, 1414, 1714, 2565, 2992, 3409, 4002
BceAI	ACGGC	2 cut(s)	517, 1911
BcgI	CGANNNNNNTGC	2 cut(s)	4207, 4241
BciT130I	CCWGG	6 cut(s)	319, 546, 576, 1230, 1828, 2036
BciVI	GTATCC	1 cut(s)	3534
BcoDI	GTCTC	8 cut(s)	370, 394, 860, 897, 1893, 2049, 2597, 4252
BfaI	CTAG	6 cut(s)	393, 1841, 2105, 2457, 3540, 3665
BfmI	CTRYAG	2 cut(s)	1998, 2625
BfoI	RGCGCY	2 cut(s)	627, 4327
BfrI	CTTAAG	1 cut(s)	3769
BfuI	GTATCC	1 cut(s)	3534
BglII	AGATCT	2 cut(s)	1807, 3058
BlpI	GCTNAGC	1 cut(s)	2770
Bme1390I	CCNGG	6 cut(s)	319, 546, 576, 1230, 1828, 2036
Bme18I	GGWCC	3 cut(s)	443, 1814, 2032
BmeT110I	CYCGRG	1 cut(s)	3995
BmgBI	CACGTC	1 cut(s)	4034
BmgT120I	GGNCC	4 cut(s)	443, 1814, 2032, 2473
BmrFI	CCNGG	6 cut(s)	319, 546, 576, 1230, 1828, 2036
BmtI	GCTAGC	1 cut(s)	2460
BpiI	GAAGAC	5 cut(s)	1740, 3031, 3561, 3887, 4015
Bpu10I	CCTNAGC	4 cut(s)	1637, 2534, 2679, 2775
Bpu1102I	GCTNAGC	1 cut(s)	2770
BpuEI	CTTGAG	9 cut(s)	230, 2031, 2183, 2960, 3515, 4250, 4361, 4373, 4478
Bsa29I	ATCGAT	2 cut(s)	920, 2826
BsaAI	YACGTR	2 cut(s)	877, 1214
BsaBI	GATNNNNATC	2 cut(s)	2085, 3063
BsaHI	GRCGYC	1 cut(s)	3136
BsaI	GGTCTC	1 cut(s)	4252
BsaJI	CCNNGG	3 cut(s)	16, 1827, 1970
BsaWI	WCCGGW	1 cut(s)	473
Bse118I	RCCGGY	1 cut(s)	1475
Bse21I	CCTNAGG	2 cut(s)	2501, 2796
Bse3DI	GCAATG	3 cut(s)	1447, 2883, 3577
Bse8I	GATNNNNATC	2 cut(s)	2085, 3063
BseBI	CCWGG	6 cut(s)	319, 546, 576, 1230, 1828, 2036
BseCI	ATCGAT	2 cut(s)	920, 2826
BseDI	CCNNGG	3 cut(s)	16, 1827, 1970
BseJI	GATNNNNATC	2 cut(s)	2085, 3063
BseMI	GCAATG	3 cut(s)	1447, 2883, 3577
BseMII	CTCAG	9 cut(s)	876, 1281, 1651, 2492, 2693, 2784, 2789, 2810, 2964
BseRI	GAGGAG	3 cut(s)	968, 2615, 3125
BseSI	GKGCMC	3 cut(s)	109, 1714, 3037
BsgI	GTGCAG	3 cut(s)	650, 2058, 2529
Bsh1236I	CGCG	1 cut(s)	1747
BshFI	GGCC	5 cut(s)	1455, 2039, 2475, 3271, 4152
BshNI	GGYRCC	3 cut(s)	3164, 3387, 4332
BshVI	ATCGAT	2 cut(s)	920, 2826
BsiHKAI	GWGCWC	8 cut(s)	216, 863, 1414, 1714, 2565, 2992, 3409, 4002
BsiHKCI	CYCGRG	1 cut(s)	3995
BsiSI	CCGG	4 cut(s)	357, 474, 1476, 4166
BsiWI	CGTACG	1 cut(s)	4067
BslFI	GGGAC	2 cut(s)	1029, 2962
BsmAI	GTCTC	8 cut(s)	370, 394, 860, 897, 1893, 2049, 2597, 4252
BsmBI	CGTCTC	1 cut(s)	860
BsmFI	GGGAC	2 cut(s)	1029, 2962
BsmI	GAATGC	1 cut(s)	1233
BsnI	GGCC	5 cut(s)	1455, 2039, 2475, 3271, 4152
Bso31I	GGTCTC	1 cut(s)	4252
BsoBI	CYCGRG	1 cut(s)	3995
Bsp1407I	TGTACA	1 cut(s)	837
Bsp1720I	GCTNAGC	1 cut(s)	2770
BspANI	GGCC	5 cut(s)	1455, 2039, 2475, 3271, 4152
BspCNI	CTCAG	9 cut(s)	875, 1282, 1650, 2493, 2692, 2783, 2788, 2809, 2965
BspDI	ATCGAT	2 cut(s)	920, 2826
BspFNI	CGCG	1 cut(s)	1747
BspHI	TCATGA	1 cut(s)	2725
BspOI	GCTAGC	1 cut(s)	2460
BspPI	GGATC	9 cut(s)	566, 920, 933, 1185, 2471, 2521, 2523, 3479, 3724
BspT107I	GGYRCC	3 cut(s)	3164, 3387, 4332
BspTI	CTTAAG	1 cut(s)	3769
BspTNI	GGTCTC	1 cut(s)	4252
BsrBI	CCGCTC	2 cut(s)	1540, 3250
BsrDI	GCAATG	3 cut(s)	1447, 2883, 3577
BsrFI	RCCGGY	1 cut(s)	1475
BsrGI	TGTACA	1 cut(s)	837
BssAI	RCCGGY	1 cut(s)	1475
BssECI	CCNNGG	3 cut(s)	16, 1827, 1970
BssNI	GRCGYC	1 cut(s)	3136
BssSI	CACGAG	1 cut(s)	1904
Bst2BI	CACGAG	1 cut(s)	1904
Bst2UI	CCWGG	6 cut(s)	319, 546, 576, 1230, 1828, 2036
Bst4CI	ACNGT	9 cut(s)	352, 388, 752, 1322, 1483, 2497, 2615, 3086, 3763
Bst6I	CTCTTC	3 cut(s)	280, 1896, 4065
BstACI	GRCGYC	1 cut(s)	3136
BstAFI	CTTAAG	1 cut(s)	3769
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstAUI	TGTACA	1 cut(s)	837
BstBAI	YACGTR	2 cut(s)	877, 1214
BstENI	CCTNNNNNAGG	1 cut(s)	2678
BstFNI	CGCG	1 cut(s)	1747
BstH2I	RGCGCY	2 cut(s)	627, 4327
BstHHI	GCGC	5 cut(s)	128, 626, 1257, 1749, 4326
BstMAI	GTCTC	8 cut(s)	370, 394, 860, 897, 1893, 2049, 2597, 4252
BstNI	CCWGG	6 cut(s)	319, 546, 576, 1230, 1828, 2036
BstNSI	RCATGY	4 cut(s)	2919, 3041, 3343, 3674
BstSCI	CCNGG	6 cut(s)	317, 544, 574, 1228, 1826, 2034
BstSFI	CTRYAG	2 cut(s)	1998, 2625
BstSLI	GKGCMC	3 cut(s)	109, 1714, 3037
BstSNI	TACGTA	2 cut(s)	877, 1214
BstUI	CGCG	1 cut(s)	1747
BstV2I	GAAGAC	5 cut(s)	1740, 3031, 3561, 3887, 4015
BstX2I	RGATCY	4 cut(s)	925, 1807, 2515, 3058
BstYI	RGATCY	4 cut(s)	925, 1807, 2515, 3058
Bsu15I	ATCGAT	2 cut(s)	920, 2826
Bsu36I	CCTNAGG	2 cut(s)	2501, 2796
BsuI	GTATCC	1 cut(s)	3534
BsuRI	GGCC	5 cut(s)	1455, 2039, 2475, 3271, 4152
BsuTUI	ATCGAT	2 cut(s)	920, 2826
BtgZI	GCGATG	1 cut(s)	121
BtrI	CACGTC	1 cut(s)	4034
BtsI	GCAGTG	2 cut(s)	537, 1797
CaiI	CAGNNNCTG	4 cut(s)	770, 1018, 1682, 2846
CciI	TCATGA	1 cut(s)	2725
CfoI	GCGC	5 cut(s)	128, 626, 1257, 1749, 4326
Cfr10I	RCCGGY	1 cut(s)	1475
Cfr13I	GGNCC	4 cut(s)	443, 1814, 2032, 2473
ClaI	ATCGAT	2 cut(s)	920, 2826
CseI	GACGC	1 cut(s)	3125
Csp6I	GTAC	7 cut(s)	838, 2696, 3082, 3343, 3388, 4068, 4234
CviQI	GTAC	7 cut(s)	838, 2696, 3082, 3343, 3388, 4068, 4234
DraIII	CACNNNGTG	2 cut(s)	1451, 2690
EaeI	YGGCCR	1 cut(s)	4150
Eam1104I	CTCTTC	3 cut(s)	280, 1896, 4065
EarI	CTCTTC	3 cut(s)	280, 1896, 4065
Ecl136II	GAGCTC	4 cut(s)	214, 861, 2990, 4000
Eco105I	TACGTA	2 cut(s)	877, 1214
Eco24I	GRGCYC	5 cut(s)	216, 863, 2992, 3432, 4002
Eco31I	GGTCTC	1 cut(s)	4252
Eco32I	GATATC	1 cut(s)	2014
Eco47I	GGWCC	3 cut(s)	443, 1814, 2032
Eco53kI	GAGCTC	4 cut(s)	214, 861, 2990, 4000
Eco57I	CTGAAG	5 cut(s)	915, 1752, 2731, 3431, 3627
Eco81I	CCTNAGG	2 cut(s)	2501, 2796
Eco88I	CYCGRG	1 cut(s)	3995
EcoICRI	GAGCTC	4 cut(s)	214, 861, 2990, 4000
EcoNI	CCTNNNNNAGG	1 cut(s)	2678
EcoRII	CCWGG	6 cut(s)	317, 544, 574, 1228, 1826, 2034
EcoRV	GATATC	1 cut(s)	2014
EcoT22I	ATGCAT	4 cut(s)	346, 1001, 3298, 3309
EcoT38I	GRGCYC	5 cut(s)	216, 863, 2992, 3432, 4002
Esp3I	CGTCTC	1 cut(s)	860
FalI	AAGNNNNNCTT	4 cut(s)	3012, 3044, 4440, 4472
FaqI	GGGAC	2 cut(s)	1029, 2962
FauI	CCCGC	2 cut(s)	1533, 2797
FauNDI	CATATG	2 cut(s)	167, 3472
FblI	GTMKAC	1 cut(s)	4036
FriOI	GRGCYC	5 cut(s)	216, 863, 2992, 3432, 4002
FspBI	CTAG	6 cut(s)	393, 1841, 2105, 2457, 3540, 3665
FspI	TGCGCA	1 cut(s)	1256
GlaI	GCGC	5 cut(s)	127, 625, 1256, 1748, 4325
HaeII	RGCGCY	2 cut(s)	627, 4327
HaeIII	GGCC	5 cut(s)	1455, 2039, 2475, 3271, 4152
HapII	CCGG	4 cut(s)	357, 474, 1476, 4166
HgaI	GACGC	1 cut(s)	3125
HhaI	GCGC	5 cut(s)	128, 626, 1257, 1749, 4326
Hin1I	GRCGYC	1 cut(s)	3136
Hin6I	GCGC	5 cut(s)	126, 624, 1255, 1747, 4324
HinP1I	GCGC	5 cut(s)	126, 624, 1255, 1747, 4324
HincII	GTYRAC	2 cut(s)	1051, 3903
HindII	GTYRAC	2 cut(s)	1051, 3903
HindIII	AAGCTT	3 cut(s)	1582, 2321, 2788
HpaII	CCGG	4 cut(s)	357, 474, 1476, 4166
HphI	GGTGA	1 cut(s)	3930
Hpy166II	GTNNAC	8 cut(s)	1051, 1712, 2340, 3051, 3903, 3938, 4037, 4441
Hpy8I	GTNNAC	8 cut(s)	1051, 1712, 2340, 3051, 3903, 3938, 4037, 4441
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	8 cut(s)	66, 939, 1148, 1324, 2903, 3211, 3235, 3406
HpyCH4III	ACNGT	9 cut(s)	352, 388, 752, 1322, 1483, 2497, 2615, 3086, 3763
HpyCH4IV	ACGT	5 cut(s)	876, 897, 1213, 3160, 4033
HpySE526I	ACGT	5 cut(s)	876, 897, 1213, 3160, 4033
Hsp92I	GRCGYC	1 cut(s)	3136
HspAI	GCGC	5 cut(s)	126, 624, 1255, 1747, 4324
KpnI	GGTACC	1 cut(s)	3391
LmnI	GCTCC	7 cut(s)	321, 547, 767, 1923, 2862, 2995, 4406
MaeI	CTAG	6 cut(s)	393, 1841, 2105, 2457, 3540, 3665
MaeII	ACGT	5 cut(s)	876, 897, 1213, 3160, 4033
MaeIII	GTNAC	6 cut(s)	696, 893, 1645, 2277, 3828, 4361
MbiI	CCGCTC	2 cut(s)	1540, 3250
MfeI	CAATTG	5 cut(s)	1664, 1872, 2247, 3395, 3549
MflI	RGATCY	4 cut(s)	925, 1807, 2515, 3058
MlsI	TGGCCA	1 cut(s)	4152
MluNI	TGGCCA	1 cut(s)	4152
MlyI	GAGTC	6 cut(s)	369, 1301, 2078, 2984, 4436, 4469
MmeI	TCCRAC	7 cut(s)	429, 473, 1011, 1248, 1572, 3572, 4450
Mox20I	TGGCCA	1 cut(s)	4152
Mph1103I	ATGCAT	4 cut(s)	346, 1001, 3298, 3309
MroXI	GAANNNNTTC	3 cut(s)	1501, 2733, 4059
MscI	TGGCCA	1 cut(s)	4152
MslI	CAYNNNNRTG	5 cut(s)	34, 1044, 1242, 2576, 3835
Msp20I	TGGCCA	1 cut(s)	4152
MspA1I	CMGCKG	2 cut(s)	2243, 2513
MspCI	CTTAAG	1 cut(s)	3769
MspI	CCGG	4 cut(s)	357, 474, 1476, 4166
MspR9I	CCNGG	6 cut(s)	319, 546, 576, 1230, 1828, 2036
MunI	CAATTG	5 cut(s)	1664, 1872, 2247, 3395, 3549
Mva1269I	GAATGC	1 cut(s)	1233
MvaI	CCWGG	6 cut(s)	319, 546, 576, 1230, 1828, 2036
MvnI	CGCG	1 cut(s)	1747
NdeI	CATATG	2 cut(s)	167, 3472
NheI	GCTAGC	1 cut(s)	2456
NmuCI	GTSAC	3 cut(s)	1645, 3828, 4361
NsbI	TGCGCA	1 cut(s)	1256
NsiI	ATGCAT	4 cut(s)	346, 1001, 3298, 3309
NspI	RCATGY	4 cut(s)	2919, 3041, 3343, 3674
OliI	CACNNNNGTG	1 cut(s)	2576
PaeR7I	CTCGAG	1 cut(s)	3995
PagI	TCATGA	1 cut(s)	2725
PciI	ACATGT	3 cut(s)	3037, 3339, 3670
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	1233
PdmI	GAANNNNTTC	3 cut(s)	1501, 2733, 4059
Pfl23II	CGTACG	1 cut(s)	4067
PflFI	GACNNNGTC	1 cut(s)	1291
PflMI	CCANNNNNTGG	4 cut(s)	1586, 1666, 2819, 3203
PfoI	TCCNGGA	2 cut(s)	317, 574
PleI	GAGTC	6 cut(s)	368, 1300, 2077, 2983, 4436, 4468
PpsI	GAGTC	6 cut(s)	368, 1300, 2077, 2983, 4436, 4468
Ppu21I	YACGTR	2 cut(s)	877, 1214
PscI	ACATGT	3 cut(s)	3037, 3339, 3670
PshBI	ATTAAT	2 cut(s)	3978, 4275
PsiI	TTATAA	2 cut(s)	1275, 3143
Psp124BI	GAGCTC	4 cut(s)	216, 863, 2992, 4002
Psp6I	CCWGG	6 cut(s)	317, 544, 574, 1228, 1826, 2034
PspGI	CCWGG	6 cut(s)	317, 544, 574, 1228, 1826, 2034
PspLI	CGTACG	1 cut(s)	4067
PspPI	GGNCC	4 cut(s)	443, 1814, 2032, 2473
PsrI	GAACNNNNNNTAC	2 cut(s)	2688, 2720
PstNI	CAGNNNCTG	4 cut(s)	770, 1018, 1682, 2846
PsuI	RGATCY	4 cut(s)	925, 1807, 2515, 3058
PsyI	GACNNNGTC	1 cut(s)	1291
PvuII	CAGCTG	1 cut(s)	2243
RsaI	GTAC	7 cut(s)	839, 2697, 3083, 3344, 3389, 4069, 4235
RsaNI	GTAC	7 cut(s)	838, 2696, 3082, 3343, 3388, 4068, 4234
RseI	CAYNNNNRTG	5 cut(s)	34, 1044, 1242, 2576, 3835
SacI	GAGCTC	4 cut(s)	216, 863, 2992, 4002
Sau96I	GGNCC	4 cut(s)	443, 1814, 2032, 2473
SchI	GAGTC	6 cut(s)	369, 1301, 2078, 2984, 4436, 4469
ScrFI	CCNGG	6 cut(s)	319, 546, 576, 1230, 1828, 2036
SfcI	CTRYAG	2 cut(s)	1998, 2625
Sfr274I	CTCGAG	1 cut(s)	3995
SinI	GGWCC	3 cut(s)	443, 1814, 2032
SlaI	CTCGAG	1 cut(s)	3995
SmiMI	CAYNNNNRTG	5 cut(s)	34, 1044, 1242, 2576, 3835
SnaBI	TACGTA	2 cut(s)	877, 1214
SspI	AATATT	5 cut(s)	1161, 1386, 1576, 2902, 3653
SspMI	CTAG	6 cut(s)	393, 1841, 2105, 2457, 3540, 3665
SstI	GAGCTC	4 cut(s)	216, 863, 2992, 4002
StyD4I	CCNGG	6 cut(s)	317, 544, 574, 1228, 1826, 2034
TaaI	ACNGT	9 cut(s)	352, 388, 752, 1322, 1483, 2497, 2615, 3086, 3763
TaiI	ACGT	5 cut(s)	879, 900, 1216, 3163, 4036
TaqI	TCGA	7 cut(s)	201, 812, 920, 2826, 3996, 4083, 4201
TaqII	GACCGA	1 cut(s)	4026
TatI	WGTACW	3 cut(s)	837, 2695, 4233
TauI	GCSGC	3 cut(s)	71, 461, 1790
TseFI	GTSAC	3 cut(s)	1645, 3828, 4361
Tsp45I	GTSAC	3 cut(s)	1645, 3828, 4361
TspGWI	ACGGA	4 cut(s)	271, 456, 701, 4085
Tth111I	GACNNNGTC	1 cut(s)	1291
Van91I	CCANNNNNTGG	4 cut(s)	1586, 1666, 2819, 3203
Vha464I	CTTAAG	1 cut(s)	3769
VneI	GTGCAC	1 cut(s)	1710
VpaK11BI	GGWCC	3 cut(s)	443, 1814, 2032
VspI	ATTAAT	2 cut(s)	3978, 4275
XagI	CCTNNNNNAGG	1 cut(s)	2678
XapI	RAATTY	8 cut(s)	230, 1335, 1401, 1855, 1865, 1988, 2450, 4354
XceI	RCATGY	4 cut(s)	2919, 3041, 3343, 3674
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3474, 4296
XhoI	CTCGAG	1 cut(s)	3995
XmiI	GTMKAC	1 cut(s)	4036
XmnI	GAANNNNTTC	3 cut(s)	1501, 2733, 4059
XspI	CTAG	6 cut(s)	393, 1841, 2105, 2457, 3540, 3665
Zsp2I	ATGCAT	4 cut(s)	346, 1001, 3298, 3309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.