Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

17925430 .. 17940878

Gene Structure 15449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG104100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3609 bp

ATGGAAGTGGATCCGGAATCGGTAGGCATGGAAGTGCCAATCCTCGGCAGCGATTCAGTGAAATGGATCGAGTTCTCTATTCTTTCATCTAATGAATTGGCTGCCACCGCCGATGCTGATACTTGTGCCCCTCTCACTCACGATTGCGCTTCTTCCATCGCCATTGGAGACCCTCCTACATATCTCATATGGAGAATCCACAAGGATTTTCCCCGTACTCTCGAATTACTTGAGCTCTCTGCTAAGAAAGAATTTCCAAAAGTCGGACTGCGAATCACTTTTCCAGAAGCACTCTCTTCTTCAGTTTTTCTTTGCAAAAATGAGATTGATATCGGTTCCAGGAGCCACCCCTATTTGCTTTATGCATTGACCGTGGCCGGAGTAGCTTACCTTTTGAAACTTGGGACCACCTCTAGCTATGCACCCAGCTCTGTTATTAGAGAGTTTAACTTGCATCCCTACGGACCAATTAGCAGTGCCGCAGCAACGCCGACCGGATGTCTTGTTGTAGGTCGGAATGACGGCTCACTTGCTTGCTTTCAACTCACACTTGAATCCACTGCTCCTGGTTTTCTGCAAGAGCTACGGGATGATTCAGGAACTGGTAGTTTCTGGGGTTTCATGTCAAGGGGTAGGACGGTAGGGGCTGTGCAGGACTTGGTTATATCTATGGTTCATGGGAAACCACTTATATTTGTGATTCATACGGATCGGGTGTTAAGAGTATGGGATCTTTCATTTCATGGCAGGCTCTTTGCCAATAAGATGAACGGTCCAACAGTGGCAGGAGCTGCATCGGTAAGGTTGTGGGTTGGTCAAGCTGTCAGCGACTCGAGCATAATTCCTGTGGCAATCTTGTACAGGCATAATTCGGATATTAGCTCAGAGACAATCTACGTATATAGGCTCCATTGTAACGTGAGAGACAGAATTGAATTATTGATATATCGTTCAAAACAAATAATTCCTATTGAGGAGGATGAATGGATTGATGTCAAACTTATTTCCAACAAGATATGCATATTGAAAAATCACGGACTGGTGTTTCTCAAGTTGTTGCATATAAGTGCCGAGACGGTAGATGCAGTTTGTTATCCTTTGCAAGAGGACTTTGTTGCAGATCAACTCTTTCAAAGTTCAGAGCATTCTTCGGATGACCTTCTTTTGATAACTCATTCAATATTTTCATCTTCAAGGGATCATATTCTACCCGTTGTATCTTCTATTTTCTTACGTAGGCTGCTTCTTCCTGGCATTCATCATAATGCTGCTTTGCGCACAACTTTGTTGGATTATAATAGGCACTGGACTGAGTCAGATTTCCACTCCTTAACTGCTGATGGGTTGAAGAAGGAAATTCTTTCCCTGATTGAACATGAGGCTCTGACTGGTAATTCATCGTCAATATTTTGGTGCTGGAAAATTTTTTGTGCTCGCTATTTCCAAAACTGGTGCAAGAGCAATGCACCATGTGGCCTGCTTGTTGATTCCTCAACCGGCACTGTTGGTTTAATTAGAAAGAGTTCAGTATCTTTTTTTCGTTCTTTGGAGGATATTGAGCGGGTTAATGATGGCTCTTTGGATGAACTTGGCAATATTCCAAGCTTTGGGTTGGATTCATTTGGCAAGGCTGATCGTAAGCTACTTGCTGAAATGCTCAGGTGTGTCACTAATGTCAGCCAGCAATTGGGAAAAACAGCTTCGGCTATATTTTACGAATCACTCATTAGTGCACCACCAGTTATCTCATCTAAAGAAATTATTCCATGCCTATTGAAGATATTAGAAACTGGATATAGTTCAACAGCAGCAGTGCTTCGGATAGCAGATCTTGGAACTGATCTTGCCTGGGAGAAAAATCTAGCAGATCACAAAAATTTGAGGAAATTTTCTATTGACATGATGAAGTCTCTTCATGCTTTGCATGAGAAATCTGGCACATGGAGCCGTATTTTAAGTGTGATTGAGAAGTATCTTAAGCATCTCATACCTCGAAAAATTATACAAAAATTTGATGCTGAAGTAGCATTGGATATTAATGCCTCCATCTTGGTCCCGGCTACGTTTCAAGTTGCAAAGGTTATGTTTGAGTCTGCATTGGATGTTCATCTGTTTCTAAGCTATCTAGTGAGCATTAGCAGGCAGATCAATATGCTACATGATGATATATCCAAAATACAACTTGAGTTGGTGCCAATGATTCAAGAAGTCATTTATGAGTGGCTTCTCCTGCATTTCTTTGCCACCACACCATCTGAATCAGCTGCAATTGAAGATTTCAGCTCTCAACTTTCATTGTTACAAATTGATAGCAACACTGGTAGAAGATTATGGAATGAGAAGCTTGGGAAGTGCGAGTTCACTCTGGCTTTTATATTCTTACTTAATGTTAGAAGTTCCTCCAAAGACCAGAACCACTTTTCTCCAAGAAGCATACCAAGCGTTGACGACATAATTGATTCAGTACGAGAGTTTGATAGCTGGACCATGTGGGGCCAGGATGGGGAATCCCTTACTTTCCTGAAGCGTGCAGCGGATCTTGCATTGATCCTGCTAAGGCACGGGCAGTATGATGCTGTTGAGCACTTACTCACTATTGTGGAGGCGCATTTAGAAAAGGAGGAGACTTCTCACGGTATTAGAGCTACAGATGGTGGATGGTGCATACTTCATCATCTTTTAGGATGCTGCTTCCTTGCTCAGGCACATCGTGGAGTACATGGGGTTCTGAAAGAGAGGAAAGTTCATGAAGCTGTTCGTTGTTTCTTCAGAGCCGCATCTGGAAACGGGTCAGCTCATGCTTTACAAAGCTTGCCTCAGGAAGCGTGGTTGCCACATCTTGGTATCGATGGTAGCGTATCAGATGCTGCATGGAGGCTCCATTACTATCAGTGGGCAATGCAGATATGTGAGCATTATAATATTAGTGAAGGTGCATGTCAGTTTGCTCTTGCTGCGCTTGAGCAACTTGAGGAAGCTTACAGTGCAAACAATGAGTCCCATGACAGAGCTCCATTTAATGAATCAGTATCTACCATCAAAGGAAGACTTTGGGCAAATGTTTGCAAATTTACTTTAGATCTCAATCTCTATTATGATGCATATTGTGCAATAATTTTAAATCCAGATGAGGAGAGCAAGTACATCTGCTTGAGGCGTCTTATAAATGTTCTTTATGAACGTGGTGCCATAAAGATTCTATGTGGTGGTCAGCTACCATTCATTGGTCTTACAGAGAAGGTAGAACAAGAGCTTGCATGGAAGGCAGAGCGGTCAGACATTTTAGCAAAGACAAACTTATACAAGTTGCTTTATGCATTTGAAATGCATCGGCATAACTGGCGAAAAGCAGCAAGCTACATGTACCTTTATTCTGCCCGTTTGAGAACTGAAGCATCTCTGAAAGGTTACCAACAATTGTGGCGAGTACTGAAGGAGATACTGAATGGGCTCTCTGCTGCTATCAACGCACTTCATCTTGTTCATCCAGCATATGCATGGATTGATCCTCTGCTTGCGAGAAGTGCTCTTCACAACGAGCAGTATCCAGGTAGAGAGGCTAGAATAACAATTGAAGACCAGCCAGCAAACAATGATGATCTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

1202

Amino Acids

134.94

Weight (kDa)

6.0

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	61 - 520	3.5e-56	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	543 - 730	1.1e-85	NUP160, helical domain
TPR_NUP160_120_M	PF23354	909 - 1160	8.5e-35	NUP160/120 middle TPR
HEAT_Nup120	PF23300	910 - 1060	3e-12	Nucleoporin Nup120, HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1296, 2919, 3164
Acc16I	TGCGCA	1 cut(s)	1277
AccB1I	GGYRCC	2 cut(s)	2191, 3185
AccB7I	CCANNNNNTGG	4 cut(s)	1607, 1687, 2840, 3224
AccBSI	CCGCTC	2 cut(s)	1561, 3271
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	6 cut(s)	108, 480, 1561, 2534, 2775, 3271
AclWI	GGATC	9 cut(s)	5, 18, 74, 717, 738, 1206, 2542, 2544, 3500
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	7 cut(s)	251, 1356, 1422, 1876, 1886, 2009, 3068
AcuI	CTGAAG	6 cut(s)	285, 2040, 2543, 2752, 3411, 3452
AcyI	GRCGYC	1 cut(s)	3157
AdeI	CACNNNGTG	2 cut(s)	1472, 2711
AfaI	GTAC	7 cut(s)	217, 860, 2466, 2718, 3143, 3365, 3429
AfiI	CCNNNNNNNGG	8 cut(s)	44, 263, 1607, 1687, 2503, 2701, 2840, 3224
AflII	CTTAAG	1 cut(s)	1976
AflIII	ACRYGT	1 cut(s)	3360
AhdI	GACNNNNNGTC	1 cut(s)	498
AjnI	CCWGG	6 cut(s)	338, 565, 1249, 1847, 2496, 3547
AleI	CACNNNNGTG	1 cut(s)	2597
Alw21I	GWGCWC	6 cut(s)	237, 1435, 1735, 2586, 3013, 3529
Alw26I	GTCTC	6 cut(s)	162, 881, 918, 1067, 1914, 2618
Alw44I	GTGCAC	1 cut(s)	1731
AlwI	GGATC	9 cut(s)	5, 18, 74, 717, 738, 1206, 2542, 2544, 3500
AlwNI	CAGNNNCTG	3 cut(s)	602, 791, 2867
Ama87I	CYCGRG	1 cut(s)	832
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	3 cut(s)	375, 1474, 2494
ApaLI	GTGCAC	1 cut(s)	1731
ApoI	RAATTY	7 cut(s)	251, 1356, 1422, 1876, 1886, 2009, 3068
ArsI	GACNNNNNNTTYG	2 cut(s)	2981, 3013
AseI	ATTAAT	1 cut(s)	2037
Asp700I	GAANNNNTTC	3 cut(s)	1522, 1761, 2754
AspLEI	GCGC	4 cut(s)	149, 1278, 2608, 2959
AspS9I	GGNCC	6 cut(s)	405, 464, 773, 2053, 2484, 2494
AsuC2I	CCSGG	1 cut(s)	2057
AvaI	CYCGRG	1 cut(s)	832
AvaII	GGWCC	5 cut(s)	405, 464, 773, 2053, 2484
AxyI	CCTNAGG	1 cut(s)	2817
BaeGI	GKGCMC	2 cut(s)	130, 1735
BamHI	GGATCC	1 cut(s)	10
BanI	GGYRCC	2 cut(s)	2191, 3185
BanII	GRGCYC	3 cut(s)	237, 3013, 3453
BbsI	GAAGAC	2 cut(s)	3052, 3582
Bbv12I	GWGCWC	6 cut(s)	237, 1435, 1735, 2586, 3013, 3529
BceAI	ACGGC	2 cut(s)	538, 1932
BciT130I	CCWGG	6 cut(s)	340, 567, 1251, 1849, 2498, 3549
BciVI	GTATCC	1 cut(s)	3555
BcnI	CCSGG	1 cut(s)	2057
BcoDI	GTCTC	6 cut(s)	162, 881, 918, 1067, 1914, 2618
BfaI	CTAG	4 cut(s)	414, 1862, 2126, 3561
BfmI	CTRYAG	1 cut(s)	2646
BfrI	CTTAAG	1 cut(s)	1976
BfuI	GTATCC	1 cut(s)	3555
BglII	AGATCT	2 cut(s)	1828, 3079
BmcAI	AGTACT	1 cut(s)	3429
Bme1390I	CCNGG	7 cut(s)	340, 567, 1251, 1849, 2057, 2498, 3549
Bme18I	GGWCC	5 cut(s)	405, 464, 773, 2053, 2484
BmeRI	GACNNNNNGTC	1 cut(s)	498
BmeT110I	CYCGRG	1 cut(s)	832
BmgT120I	GGNCC	6 cut(s)	405, 464, 773, 2053, 2484, 2494
BmrFI	CCNGG	7 cut(s)	340, 567, 1251, 1849, 2057, 2498, 3549
BpiI	GAAGAC	2 cut(s)	3052, 3582
BplI	GAGNNNNNCTC	2 cut(s)	3511, 3543
Bpu10I	CCTNAGC	3 cut(s)	1658, 2555, 2700
BpuEI	CTTGAG	6 cut(s)	251, 1034, 2204, 2981, 2990, 3172
BpuMI	CCSGG	1 cut(s)	2057
Bsa29I	ATCGAT	1 cut(s)	2847
BsaAI	YACGTR	2 cut(s)	898, 1235
BsaBI	GATNNNNATC	3 cut(s)	329, 2106, 3084
BsaHI	GRCGYC	1 cut(s)	3157
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	43, 372, 1848
BsaWI	WCCGGW	2 cut(s)	13, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	3125, 3155
Bsc4I	CCNNNNNNNGG	8 cut(s)	44, 263, 1607, 1687, 2503, 2701, 2840, 3224
Bse118I	RCCGGY	1 cut(s)	1496
Bse1I	ACTGG	9 cut(s)	607, 1044, 1310, 1393, 1454, 1739, 1795, 2323, 3344
Bse21I	CCTNAGG	1 cut(s)	2817
Bse3DI	GCAATG	2 cut(s)	1468, 2904
Bse8I	GATNNNNATC	3 cut(s)	329, 2106, 3084
BseAI	TCCGGA	1 cut(s)	13
BseBI	CCWGG	6 cut(s)	340, 567, 1251, 1849, 2498, 3549
BseCI	ATCGAT	1 cut(s)	2847
BseDI	CCNNGG	3 cut(s)	43, 372, 1848
BseJI	GATNNNNATC	3 cut(s)	329, 2106, 3084
BseLI	CCNNNNNNNGG	8 cut(s)	44, 263, 1607, 1687, 2503, 2701, 2840, 3224
BseMI	GCAATG	2 cut(s)	1468, 2904
BseMII	CTCAG	5 cut(s)	897, 1302, 1672, 2714, 2831
BseNI	ACTGG	9 cut(s)	607, 1044, 1310, 1393, 1454, 1739, 1795, 2323, 3344
BseRI	GAGGAG	3 cut(s)	989, 2636, 3146
BseSI	GKGCMC	2 cut(s)	130, 1735
BseYI	CCCAGC	1 cut(s)	425
BsgI	GTGCAG	2 cut(s)	671, 2550
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	3 cut(s)	377, 1476, 2496
BshNI	GGYRCC	2 cut(s)	2191, 3185
BshVI	ATCGAT	1 cut(s)	2847
BsiEI	CGRYCG	1 cut(s)	495
BsiHKAI	GWGCWC	6 cut(s)	237, 1435, 1735, 2586, 3013, 3529
BsiHKCI	CYCGRG	1 cut(s)	832
BsiSI	CCGG	5 cut(s)	14, 378, 495, 1497, 2057
BslFI	GGGAC	3 cut(s)	418, 2039, 2983
BslI	CCNNNNNNNGG	8 cut(s)	44, 263, 1607, 1687, 2503, 2701, 2840, 3224
BsmAI	GTCTC	6 cut(s)	162, 881, 918, 1067, 1914, 2618
BsmBI	CGTCTC	1 cut(s)	1067
BsmFI	GGGAC	3 cut(s)	418, 2039, 2983
BsmI	GAATGC	2 cut(s)	1144, 1254
BsnI	GGCC	3 cut(s)	377, 1476, 2496
Bso31I	GGTCTC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	832
Bsp1286I	GDGCHC	8 cut(s)	130, 237, 1435, 1735, 2586, 3013, 3453, 3529
Bsp13I	TCCGGA	1 cut(s)	13
Bsp1407I	TGTACA	1 cut(s)	858
BspACI	CCGC	6 cut(s)	108, 480, 1561, 2534, 2775, 3271
BspANI	GGCC	3 cut(s)	377, 1476, 2496
BspCNI	CTCAG	5 cut(s)	896, 1303, 1671, 2713, 2830
BspDI	ATCGAT	1 cut(s)	2847
BspEI	TCCGGA	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	2746
BspPI	GGATC	9 cut(s)	5, 18, 74, 717, 738, 1206, 2542, 2544, 3500
BspQI	GCTCTTC	1 cut(s)	3534
BspT107I	GGYRCC	2 cut(s)	2191, 3185
BspTI	CTTAAG	1 cut(s)	1976
BspTNI	GGTCTC	1 cut(s)	162
BsrBI	CCGCTC	2 cut(s)	1561, 3271
BsrDI	GCAATG	2 cut(s)	1468, 2904
BsrFI	RCCGGY	1 cut(s)	1496
BsrGI	TGTACA	1 cut(s)	858
BsrI	ACTGG	9 cut(s)	607, 1044, 1310, 1393, 1454, 1739, 1795, 2323, 3344
BssAI	RCCGGY	1 cut(s)	1496
BssECI	CCNNGG	3 cut(s)	43, 372, 1848
BssNI	GRCGYC	1 cut(s)	3157
Bst2UI	CCWGG	6 cut(s)	340, 567, 1251, 1849, 2498, 3549
Bst4CI	ACNGT	8 cut(s)	373, 640, 773, 781, 1078, 1504, 2636, 2984
Bst6I	CTCTTC	3 cut(s)	301, 1917, 3534
BstACI	GRCGYC	1 cut(s)	3157
BstAFI	CTTAAG	1 cut(s)	1976
BstAPI	GCANNNNNTGC	2 cut(s)	791, 3107
BstAUI	TGTACA	1 cut(s)	858
BstBAI	YACGTR	2 cut(s)	898, 1235
BstDEI	CTNAG	8 cut(s)	243, 883, 1311, 1658, 2117, 2555, 2700, 2817
BstDSI	CCRYGG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	3407
BstENI	CCTNNNNNAGG	1 cut(s)	2699
BstHHI	GCGC	4 cut(s)	149, 1278, 2608, 2959
BstMAI	GTCTC	6 cut(s)	162, 881, 918, 1067, 1914, 2618
BstMCI	CGRYCG	1 cut(s)	495
BstNI	CCWGG	6 cut(s)	340, 567, 1251, 1849, 2498, 3549
BstNSI	RCATGY	2 cut(s)	2940, 3364
BstPI	GGTNACC	1 cut(s)	3407
BstSCI	CCNGG	7 cut(s)	338, 565, 1249, 1847, 2055, 2496, 3547
BstSFI	CTRYAG	1 cut(s)	2646
BstSLI	GKGCMC	2 cut(s)	130, 1735
BstSNI	TACGTA	2 cut(s)	898, 1235
BstV2I	GAAGAC	2 cut(s)	3052, 3582
BstX2I	RGATCY	5 cut(s)	10, 730, 1828, 2536, 3079
BstYI	RGATCY	5 cut(s)	10, 730, 1828, 2536, 3079
Bsu15I	ATCGAT	1 cut(s)	2847
Bsu36I	CCTNAGG	1 cut(s)	2817
BsuI	GTATCC	1 cut(s)	3555
BsuRI	GGCC	3 cut(s)	377, 1476, 2496
BsuTUI	ATCGAT	1 cut(s)	2847
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	142
BtsI	GCAGTG	3 cut(s)	481, 558, 1818
CaiI	CAGNNNCTG	3 cut(s)	602, 791, 2867
CciI	TCATGA	1 cut(s)	2746
CfoI	GCGC	4 cut(s)	149, 1278, 2608, 2959
Cfr10I	RCCGGY	1 cut(s)	1496
Cfr13I	GGNCC	6 cut(s)	405, 464, 773, 2053, 2484, 2494
ClaI	ATCGAT	1 cut(s)	2847
CseI	GACGC	1 cut(s)	3146
Csp6I	GTAC	7 cut(s)	216, 859, 2465, 2717, 3142, 3364, 3428
CspCI	CAANNNNNGTGG	2 cut(s)	3401, 3436
CviQI	GTAC	7 cut(s)	216, 859, 2465, 2717, 3142, 3364, 3428
DdeI	CTNAG	8 cut(s)	243, 883, 1311, 1658, 2117, 2555, 2700, 2817
DraI	TTTAAA	1 cut(s)	3120
DraIII	CACNNNGTG	2 cut(s)	1472, 2711
DriI	GACNNNNNGTC	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	3 cut(s)	301, 1917, 3534
Eam1105I	GACNNNNNGTC	1 cut(s)	498
EarI	CTCTTC	3 cut(s)	301, 1917, 3534
Ecl136II	GAGCTC	2 cut(s)	235, 3011
Eco105I	TACGTA	2 cut(s)	898, 1235
Eco24I	GRGCYC	3 cut(s)	237, 3013, 3453
Eco31I	GGTCTC	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	5 cut(s)	405, 464, 773, 2053, 2484
Eco53kI	GAGCTC	2 cut(s)	235, 3011
Eco57I	CTGAAG	6 cut(s)	285, 2040, 2543, 2752, 3411, 3452
Eco81I	CCTNAGG	1 cut(s)	2817
Eco88I	CYCGRG	1 cut(s)	832
Eco91I	GGTNACC	1 cut(s)	3407
EcoICRI	GAGCTC	2 cut(s)	235, 3011
EcoNI	CCTNNNNNAGG	1 cut(s)	2699
EcoO65I	GGTNACC	1 cut(s)	3407
EcoRII	CCWGG	6 cut(s)	338, 565, 1249, 1847, 2496, 3547
EcoRV	GATATC	1 cut(s)	331
EcoT22I	ATGCAT	6 cut(s)	367, 1022, 3103, 3319, 3330, 3499
EcoT38I	GRGCYC	3 cut(s)	237, 3013, 3453
Esp3I	CGTCTC	1 cut(s)	1067
FalI	AAGNNNNNCTT	4 cut(s)	3033, 3065, 3281, 3313
FaqI	GGGAC	3 cut(s)	418, 2039, 2983
FauI	CCCGC	1 cut(s)	1554
FauNDI	CATATG	2 cut(s)	188, 3493
FriOI	GRGCYC	3 cut(s)	237, 3013, 3453
FspBI	CTAG	4 cut(s)	414, 1862, 2126, 3561
FspI	TGCGCA	1 cut(s)	1277
GlaI	GCGC	4 cut(s)	148, 1277, 2607, 2958
GsaI	CCCAGC	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	377, 1476, 2496
HapII	CCGG	5 cut(s)	14, 378, 495, 1497, 2057
HgaI	GACGC	1 cut(s)	3146
HhaI	GCGC	4 cut(s)	149, 1278, 2608, 2959
Hin1I	GRCGYC	1 cut(s)	3157
Hin6I	GCGC	4 cut(s)	147, 1276, 2606, 2957
HinP1I	GCGC	4 cut(s)	147, 1276, 2606, 2957
HincII	GTYRAC	1 cut(s)	2446
HindII	GTYRAC	1 cut(s)	2446
HindIII	AAGCTT	4 cut(s)	1603, 2342, 2809, 2976
HpaII	CCGG	5 cut(s)	14, 378, 495, 1497, 2057
Hpy166II	GTNNAC	3 cut(s)	1733, 2361, 2446
Hpy8I	GTNNAC	3 cut(s)	1733, 2361, 2446
HpyAV	CCTTC	6 cut(s)	1169, 1345, 2924, 3232, 3256, 3427
HpyCH4III	ACNGT	8 cut(s)	373, 640, 773, 781, 1078, 1504, 2636, 2984
HpyCH4IV	ACGT	5 cut(s)	897, 918, 1234, 2063, 3181
HpyF3I	CTNAG	8 cut(s)	243, 883, 1311, 1658, 2117, 2555, 2700, 2817
HpySE526I	ACGT	5 cut(s)	897, 918, 1234, 2063, 3181
Hsp92I	GRCGYC	1 cut(s)	3157
HspAI	GCGC	4 cut(s)	147, 1276, 2606, 2957
Kpn2I	TCCGGA	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	3534
LmnI	GCTCC	7 cut(s)	342, 568, 788, 912, 1944, 2883, 3016
MaeI	CTAG	4 cut(s)	414, 1862, 2126, 3561
MaeII	ACGT	5 cut(s)	897, 918, 1234, 2063, 3181
MaeIII	GTNAC	4 cut(s)	914, 1666, 2298, 3407
MbiI	CCGCTC	2 cut(s)	1561, 3271
MfeI	CAATTG	4 cut(s)	1685, 2268, 3416, 3570
MflI	RGATCY	5 cut(s)	10, 730, 1828, 2536, 3079
MhlI	GDGCHC	8 cut(s)	130, 237, 1435, 1735, 2586, 3013, 3453, 3529
MlyI	GAGTC	4 cut(s)	824, 1322, 2099, 3005
MmeI	TCCRAC	6 cut(s)	244, 494, 800, 1032, 1269, 1593
Mph1103I	ATGCAT	6 cut(s)	367, 1022, 3103, 3319, 3330, 3499
MroI	TCCGGA	1 cut(s)	13
MroXI	GAANNNNTTC	3 cut(s)	1522, 1761, 2754
MslI	CAYNNNNRTG	5 cut(s)	32, 1065, 1263, 2597, 3496
MspA1I	CMGCKG	2 cut(s)	2264, 2534
MspCI	CTTAAG	1 cut(s)	1976
MspI	CCGG	5 cut(s)	14, 378, 495, 1497, 2057
MspR9I	CCNGG	7 cut(s)	340, 567, 1251, 1849, 2057, 2498, 3549
MunI	CAATTG	4 cut(s)	1685, 2268, 3416, 3570
Mva1269I	GAATGC	2 cut(s)	1144, 1254
MvaI	CCWGG	6 cut(s)	340, 567, 1251, 1849, 2498, 3549
NciI	CCSGG	1 cut(s)	2057
NdeI	CATATG	2 cut(s)	188, 3493
NmeAIII	GCCGAG	2 cut(s)	24, 1096
NmuCI	GTSAC	1 cut(s)	1666
NsbI	TGCGCA	1 cut(s)	1277
NsiI	ATGCAT	6 cut(s)	367, 1022, 3103, 3319, 3330, 3499
NspI	RCATGY	2 cut(s)	2940, 3364
OliI	CACNNNNGTG	1 cut(s)	2597
PaeR7I	CTCGAG	1 cut(s)	832
PagI	TCATGA	1 cut(s)	2746
PciI	ACATGT	1 cut(s)	3360
PciSI	GCTCTTC	1 cut(s)	3534
PcsI	WCGNNNNNNNCGW	1 cut(s)	2853
PctI	GAATGC	2 cut(s)	1144, 1254
PdmI	GAANNNNTTC	3 cut(s)	1522, 1761, 2754
PflFI	GACNNNGTC	1 cut(s)	1312
PflMI	CCANNNNNTGG	4 cut(s)	1607, 1687, 2840, 3224
PfoI	TCCNGGA	1 cut(s)	338
PleI	GAGTC	4 cut(s)	824, 1321, 2098, 3004
PpsI	GAGTC	4 cut(s)	824, 1321, 2098, 3004
Ppu21I	YACGTR	2 cut(s)	898, 1235
PscI	ACATGT	1 cut(s)	3360
PshBI	ATTAAT	1 cut(s)	2037
PsiI	TTATAA	3 cut(s)	1296, 2919, 3164
Psp124BI	GAGCTC	2 cut(s)	237, 3013
Psp6I	CCWGG	6 cut(s)	338, 565, 1249, 1847, 2496, 3547
PspEI	GGTNACC	1 cut(s)	3407
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	6 cut(s)	338, 565, 1249, 1847, 2496, 3547
PspPI	GGNCC	6 cut(s)	405, 464, 773, 2053, 2484, 2494
PspXI	VCTCGAGB	1 cut(s)	832
PsrI	GAACNNNNNNTAC	2 cut(s)	2709, 2741
PstNI	CAGNNNCTG	3 cut(s)	602, 791, 2867
PsuI	RGATCY	5 cut(s)	10, 730, 1828, 2536, 3079
PsyI	GACNNNGTC	1 cut(s)	1312
PvuII	CAGCTG	1 cut(s)	2264
RsaI	GTAC	7 cut(s)	217, 860, 2466, 2718, 3143, 3365, 3429
RsaNI	GTAC	7 cut(s)	216, 859, 2465, 2717, 3142, 3364, 3428
RseI	CAYNNNNRTG	5 cut(s)	32, 1065, 1263, 2597, 3496
SacI	GAGCTC	2 cut(s)	237, 3013
SapI	GCTCTTC	1 cut(s)	3534
Sau96I	GGNCC	6 cut(s)	405, 464, 773, 2053, 2484, 2494
ScaI	AGTACT	1 cut(s)	3429
SchI	GAGTC	4 cut(s)	824, 1322, 2099, 3005
ScrFI	CCNGG	7 cut(s)	340, 567, 1251, 1849, 2057, 2498, 3549
SduI	GDGCHC	8 cut(s)	130, 237, 1435, 1735, 2586, 3013, 3453, 3529
SfcI	CTRYAG	1 cut(s)	2646
Sfr274I	CTCGAG	1 cut(s)	832
SinI	GGWCC	5 cut(s)	405, 464, 773, 2053, 2484
SlaI	CTCGAG	1 cut(s)	832
SmiMI	CAYNNNNRTG	5 cut(s)	32, 1065, 1263, 2597, 3496
SmlI	CTYRAG	8 cut(s)	230, 832, 1049, 1976, 2183, 2960, 2969, 3151
SmoI	CTYRAG	8 cut(s)	230, 832, 1049, 1976, 2183, 2960, 2969, 3151
SnaBI	TACGTA	2 cut(s)	898, 1235
SsiI	CCGC	6 cut(s)	108, 480, 1561, 2534, 2775, 3271
SspI	AATATT	4 cut(s)	1182, 1407, 1597, 2923
SspMI	CTAG	4 cut(s)	414, 1862, 2126, 3561
SstI	GAGCTC	2 cut(s)	237, 3013
StyD4I	CCNGG	7 cut(s)	338, 565, 1249, 1847, 2055, 2496, 3547
TaaI	ACNGT	8 cut(s)	373, 640, 773, 781, 1078, 1504, 2636, 2984
TaiI	ACGT	5 cut(s)	900, 921, 1237, 2066, 3184
TaqI	TCGA	5 cut(s)	69, 222, 833, 1993, 2847
TatI	WGTACW	4 cut(s)	858, 2716, 3141, 3427
TauI	GCSGC	2 cut(s)	482, 2777
TseFI	GTSAC	1 cut(s)	1666
Tsp45I	GTSAC	1 cut(s)	1666
TspGWI	ACGGA	3 cut(s)	477, 722, 1050
Tth111I	GACNNNGTC	1 cut(s)	1312
Van91I	CCANNNNNTGG	4 cut(s)	1607, 1687, 2840, 3224
Vha464I	CTTAAG	1 cut(s)	1976
VneI	GTGCAC	1 cut(s)	1731
VpaK11BI	GGWCC	5 cut(s)	405, 464, 773, 2053, 2484
VspI	ATTAAT	1 cut(s)	2037
XagI	CCTNNNNNAGG	1 cut(s)	2699
XapI	RAATTY	7 cut(s)	251, 1356, 1422, 1876, 1886, 2009, 3068
XceI	RCATGY	2 cut(s)	2940, 3364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3495
XhoI	CTCGAG	1 cut(s)	832
XmnI	GAANNNNTTC	3 cut(s)	1522, 1761, 2754
XspI	CTAG	4 cut(s)	414, 1862, 2126, 3561
ZrmI	AGTACT	1 cut(s)	3429
Zsp2I	ATGCAT	6 cut(s)	367, 1022, 3103, 3319, 3330, 3499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.