Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

20711423 .. 20727314

Gene Structure 15892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37403

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4440 bp

ATGGAATTGGATCCGGAATCGGTAGGCATGGAAGTACCAATCCTCGGCAGCGATTCAGTGGAATGGATCGAGGTCCCTATTCTTTCATCTAATGAATTGGCTGCCACCGCCGATGCTGATACTTGTGCCCCTCTCACTCACGATTGCGCTTCTTCCATCGCCATTGGAGACCCTCCTACATATCTCATATGGATAATCCACAAGGATTTCCCCCGTACTCTCGAATTACTCGAGCTCTCTGCTAAGAAAGAATTTCCAAAAGTCGGACTGCGAATCAATTTTCCAGAAGCACTCTCTTCTTCAGTTTTTCTTTGCAAAAATGAGATTGATATCGGTTCCAGGAGCCACCCCTATTTGCTATATGCATTGACCGTGGCCGGAGTCGCTTACCTTTTGAAACTTGGGACCACCTCTAGCTATGCACCCAGCTCTGTTATTAGAGAGTTTAACTTGCATCCCTACGGACCTATTAGCAGTGCCGCAGCAACGCCGACCGGATGTCTCGTTGTAGGTCAGAATGACGGTTCTCTTGCTTGCTTTCAACTCACACTTGAATCCACTGCCCCTGGTTTTCTGCAAGAGCTACGGGATGATTCAGGAACTGGTAGTTTCTGGGGTTTCATGTCAAGGGGTAGGACGGTAGGGGCTGTGCAGGACTTGGTTATATCTATGGTTCATGGGAAACCACTTATATTTGTGATTCATACGGATTGGGTGTTAAGAGTATGGGATCTTTCATTTCATGGCAGGCTCTTTGCCAATAAGATGAACGGTCCAACAGTGGCAGGAGCTGCATCGGTAAGGTTGTGGGTTGGTCAAGCTGACAATGACTCGAGCATAATTCCTGTGGCAATCTTGTACAGGCATAATTCGGATATTAGCTCAGAGACAATCTACGTATATAGGCTCCATTGTAACGTGAGAGACAGAATTGAATTATTGATATATCGTTCAAAACAAATAATTCCTATTGAGGATGGATGGATTGATGTCAAACTTATTTCCAACAAGATATGCATATTGAAAAATCACGGACTGGTGTTTCTCAAGTTGTTGCATATAAATGCCGAGACGGTAGATGCAGTTTGGGTAGATGCAGTTTGTTATCCTTTGCAAGAGGACTTTGTTGCAGATCAACTCTTTCAAAGTTCAAAGCATTCTTCGGATGACCTTCTTTTGATAACTCATTCAATATTTTCATCTTCAAGGGATCATATTCTACCTGTTGTATCTTCCATTTTCTTACGTAGGCTGCTTCTTCCTGGCATTCATCATAATGCTGCTTTGCGCGCAACTTTGTTGGATTATAATAGGCACTGGACTGAGTCAGATTTCCACTCCTTAACTGCTGATGGGTTGAAGAAGGAAATTCTTTCCCTGATTGAACATGAGGCTCTGACTGGTAATTCATCGTCAATATTTTGCTGCTGGGAAATTTTTTGTGCTCGCTATTTCCAAAACTGGTGCAAGAGCAATGCACCATGTGGCCTGCTTGTTGATTCCTCAACCGGCACTGTTGGTTTAATTAGAAAGAGTTCAGTATCTTTTTTTCGTTCTTTGGAGGATATTGAGCGGGTTAATGATGGCTCTTTGGATGAACTTGGCAATATTCCAAGCTTTGGGTTGGATTCATTTGGCAAGGCTGATTGTAAGCTACTAGCTGAAATGCTCAGGTGTGTCACTAATGTCAGCCAGCAATTGGGAAAAACAGCTTCTGCTATATTTTACGAATTACTCATTAGTGCACCACCAGTTATCTCATCTAAAGAAATTATTCCACGCCTATTGAAGATATTAGAAACTGGATATAGTTCAACAGCAGCGGCGCTTTGGATAGCAGATCTTGGAACTGATCTTGCCTGGGAGAAAAATCCAGCAGATCACAAAAATTTGAGGAAATTTTCTTTTGACATGATGAAGTCTCTTCATGCTTTGCACGAGAAATCTGGCACATGGAGCCGTATTTTAAGTGTGATTGAGAAGTATCTTAAGTATCTCATACCTCGAAAAATTATACAAAAATTTGATGCTGAAGTAGCATTGGATATTAATGCCTCCATCTTGGTCCCAGCTACGTTTCAAGTTGCAAAGGTTATGTTTGAGTCTGCATTGGATATTCATCTGTTTCTAAGCTATCTAGTGAGCATTAGCAGGCAGATCAATATGCTACATGATGATATATCCAAAATACAACGTGAGTTGGTGCCAATGATTCAAGAAGTCATTTATGAGTGGCTTCTCCTGCATTTCTTTGCCACCACACCATCTGAATCAGTTGCATTTGAAGATTTCAGCTCTCAACTTTCATTGTTACAAATTGATAGCAACACTGGTAGAAGATTATGTAATGAGAAGCTTGGGAAGTGCGAGTTCACTCTGGCTTTTATATTCTTACTTAATGTTAGAAGTTCCTCCAAAGACCAGAACCACTTTTCTCCAAGAAGCATACCAAGCGTTGAGGACATAATTGATTCAGTACGAGAGTTTGATAGCTGGACCATGTGGGGCCAGGATGGGGAATCCCTTACTGTCCTGAAGCGTGTAGTGGATCTTGCATTGATCCTGCTAAGGCATGGGCAGTATGATGCTGTTGAGCACTTACTCACTATTGTGGAGGCACATTTAGAAAAGGAGGAGACTTCTCACGGTATTAGAGCTACAGATGGTGGATGGTGCATACTTCACCATCTTTTAGGATGCTGCTTCCTTGCTCAGGCACATCGTGGAGTACATGGGGTTCTGAAAGAGAGGAAAGTTCATGAAGCTGTTCGTTGTTTCTTCAGAGCCGCATCTGGAAGCGGGTCAGCTCATGCTTTACAAAGCTTGCCTCAGGAAGCGTGGTTGCCACATCTTGGTATCGATGGTAGCGTATCAGATGCTGCATGGAGGCTCCATTACTATCAGTGGGCAATGCAGATATGTGAGCATTATAATATTAGTGAAGGTGCATGTCAGTTTGCTCTTGCTGCGCTTGAGCAAGTTGAGGAAGCTTACAGTGCAAACAATGATTCCCATGACAGAGCTCCATTTAATGAATCAGTATCCACCATCAAAGGAAGGCTTTGGGCAAATGTTTGCCAATTTACTTTAGATCTCAATCTCTATTATGATGCATATTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAGTACATCAGCTTGAGGCATCTTATAAATGTTCTTTATGAACGTGGTGCCATAAAGATTCTATGTGGTGGTCAGCTACCATTCATTGGTCTTACAGAGAAGGTAGAACAAGAGCTTGCATGGAAGGCAGAGCGGTCAGACATTTTAGCAAAGACAAACTTATATAAGTTGCTTTATGCATTTGAAATGCATCGGCATAACTGGCGAAAAGCAGCAAGCTACATGTACCTTTATTCTGCCCGTTTGAGAACTGAAGCATCTCTGAAAGGTTACCAACAATTGTGGCGAGTACTGAAGGAGATACTGAATGGGCTCTCTGCGGCTATCAACGCACTTCATCTTGTTCATCCAGCATATGCTTGGATTGATCCTCTGCTTGTGAGAAGTGCTCTTCACAACGAGCAGTATCCAGCAGCAAACAATGATGTTCATCCTCGAAGTTGGAAATCTTTTATGGATATTCAGAAAATTGAGAATGAGTTTGTGCTTACTTCAGCAGAACATCTGCTTTCACTGGCACATGTCAAATGGACAAATACAGGAACCCAGACAGCACCATTAGAGTTGGCTGATCTTTTGATCCAGACAAATCTATATGATATGGCATTTACAGTTCTTGTAAGATTCTTCAAAGGTTCAGAGTTAAAGAGGGGATTGGAAAGAGTTTTCTCAGCTATGTCACTAAAATGCTTTCCACATATAGTTGATTCTTCAAGGGTTGGGGATGATCCCATCGTTCATGGTTCACCAGATATGTCTTCAGCAAATCAACAATCCAATGGAATAAATCAATGGGGAACTCTCGAGCTTTATCTTGACCGGTATATAGTGTTCCATGCACGTCTACCACTAATTGTTGCCGAAACTCTTCTTCGTACGGATTCTCAAATCCAACTGCCTCTTTGGTTGGTTAAATTATTCAAGGATGGCAGGAGGGAAAAGACATTGGGGATGACTGGCCACGAATCAAATCCGGCATCGTTGTTTCAATTATATGTTGATTATGGTCGACATGGAGAAGCTATAAATCTGTTGCTTGAGCACGAAGGGTGTTTTGGATCCATGAGACCAGCCAACATCATGAATCGTAAAAGACCATTTGGAGTTTGGTTTCCGTATACAATGATTCAGCGCCTCTGGTGCCAACTTGAGGAAATGATAAATTCCGGTCACATGGTAGCTCAATGTAAGCAGTTCAAAGATTTGCTACACAGAGCTTTGCTGAAACATCTCCAACTGGTAAAGATGGACTCGGAAGGACTTTGTTTTATTTCAGAAAATAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

1479

Amino Acids

166.6

Weight (kDa)

6.06

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	61 - 524	2.6e-52	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	547 - 734	2.3e-82	NUP160, helical domain
TPR_NUP160_120_M	PF23354	913 - 1164	8.7e-34	NUP160/120 middle TPR
HEAT_Nup120	PF23300	914 - 1064	4.4e-12	Nucleoporin Nup120, HEAT repeats
TPR_Nup160_C	PF23347	1205 - 1454	5e-07	Nup160 C-terminal TPR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1308, 2931, 3176
AccB1I	GGYRCC	3 cut(s)	2203, 3197, 4290
AccB7I	CCANNNNNTGG	4 cut(s)	1619, 1699, 2852, 3236
AccBSI	CCGCTC	2 cut(s)	1573, 3283
AccI	GTMKAC	3 cut(s)	3994, 4159, 4268
AccII	CGCG	1 cut(s)	1290
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	8 cut(s)	108, 480, 1573, 1823, 2787, 2799, 3283, 3470
AcoI	YGGCCR	2 cut(s)	375, 4108
AcsI	RAATTY	7 cut(s)	251, 1368, 1434, 1888, 1898, 2021, 4312
AcuI	CTGAAG	8 cut(s)	285, 2052, 2555, 2764, 3423, 3464, 3627, 3894
AdeI	CACNNNGTG	2 cut(s)	1484, 2723
AfaI	GTAC	9 cut(s)	36, 217, 860, 2478, 2730, 3155, 3377, 3441, 4027
AfiI	CCNNNNNNNGG	9 cut(s)	44, 263, 1619, 1699, 2515, 2713, 2852, 3236, 4300
AflII	CTTAAG	1 cut(s)	1988
AflIII	ACRYGT	2 cut(s)	3372, 3670
AgeI	ACCGGT	1 cut(s)	3969
AhdI	GACNNNNNGTC	1 cut(s)	498
AjiI	CACGTC	1 cut(s)	3992
AjnI	CCWGG	5 cut(s)	338, 565, 1261, 1859, 2508
AjuI	GAANNNNNNNTTGG	2 cut(s)	4188, 4220
AleI	CACNNNNGTG	1 cut(s)	2609
Alw21I	GWGCWC	7 cut(s)	237, 1447, 1747, 2598, 3025, 3541, 4194
Alw26I	GTCTC	8 cut(s)	162, 506, 881, 918, 1064, 1926, 2630, 4210
Alw44I	GTGCAC	1 cut(s)	1743
AlwNI	CAGNNNCTG	4 cut(s)	602, 791, 1715, 2879
Ama87I	CYCGRG	3 cut(s)	230, 832, 3953
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	4 cut(s)	375, 1486, 2506, 4108
ApaLI	GTGCAC	1 cut(s)	1743
ApoI	RAATTY	7 cut(s)	251, 1368, 1434, 1888, 1898, 2021, 4312
AseI	ATTAAT	1 cut(s)	2049
AsiGI	ACCGGT	1 cut(s)	3969
Asp700I	GAANNNNTTC	4 cut(s)	1534, 1773, 2766, 4017
AspLEI	GCGC	6 cut(s)	149, 1290, 1292, 1828, 2971, 4284
AspS9I	GGNCC	7 cut(s)	73, 405, 464, 773, 2065, 2496, 2506
AsuHPI	GGTGA	2 cut(s)	2675, 3888
AvaI	CYCGRG	3 cut(s)	230, 832, 3953
AvaII	GGWCC	6 cut(s)	73, 405, 464, 773, 2065, 2496
AxyI	CCTNAGG	1 cut(s)	2829
BaeGI	GKGCMC	2 cut(s)	130, 1747
BalI	TGGCCA	1 cut(s)	4110
BamHI	GGATCC	2 cut(s)	10, 4208
BanI	GGYRCC	3 cut(s)	2203, 3197, 4290
BanII	GRGCYC	3 cut(s)	237, 3025, 3465
BauI	CACGAG	1 cut(s)	1937
BbsI	GAAGAC	1 cut(s)	3900
Bbv12I	GWGCWC	7 cut(s)	237, 1447, 1747, 2598, 3025, 3541, 4194
BceAI	ACGGC	1 cut(s)	1944
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	5 cut(s)	340, 567, 1263, 1861, 2510
BciVI	GTATCC	2 cut(s)	3052, 3567
BcoDI	GTCTC	8 cut(s)	162, 506, 881, 918, 1064, 1926, 2630, 4210
BfaI	CTAG	3 cut(s)	414, 1658, 2138
BfmI	CTRYAG	1 cut(s)	2658
BfoI	RGCGCY	2 cut(s)	1829, 4285
BfrI	CTTAAG	1 cut(s)	1988
BfuI	GTATCC	2 cut(s)	3052, 3567
BglII	AGATCT	2 cut(s)	1840, 3091
BmcAI	AGTACT	1 cut(s)	3441
Bme1390I	CCNGG	5 cut(s)	340, 567, 1263, 1861, 2510
Bme18I	GGWCC	6 cut(s)	73, 405, 464, 773, 2065, 2496
BmeRI	GACNNNNNGTC	1 cut(s)	498
BmeT110I	CYCGRG	3 cut(s)	230, 832, 3953
BmgBI	CACGTC	1 cut(s)	3992
BmgT120I	GGNCC	7 cut(s)	73, 405, 464, 773, 2065, 2496, 2506
BmrFI	CCNGG	5 cut(s)	340, 567, 1263, 1861, 2510
BpiI	GAAGAC	1 cut(s)	3900
BplI	GAGNNNNNCTC	2 cut(s)	3523, 3555
Bpu10I	CCTNAGC	3 cut(s)	1670, 2567, 2712
BpuEI	CTTGAG	5 cut(s)	1031, 2993, 3184, 4208, 4319
Bsa29I	ATCGAT	1 cut(s)	2859
BsaAI	YACGTR	2 cut(s)	898, 1247
BsaBI	GATNNNNATC	4 cut(s)	329, 2118, 3096, 3579
BsaI	GGTCTC	2 cut(s)	162, 4210
BsaJI	CCNNGG	4 cut(s)	43, 372, 565, 1860
BsaWI	WCCGGW	4 cut(s)	13, 494, 3969, 4316
BsaXI	ACNNNNNCTCC	2 cut(s)	3137, 3167
Bsc4I	CCNNNNNNNGG	9 cut(s)	44, 263, 1619, 1699, 2515, 2713, 2852, 3236, 4300
Bse118I	RCCGGY	2 cut(s)	1508, 3969
Bse21I	CCTNAGG	1 cut(s)	2829
Bse3DI	GCAATG	2 cut(s)	1480, 2916
Bse8I	GATNNNNATC	4 cut(s)	329, 2118, 3096, 3579
BseAI	TCCGGA	1 cut(s)	13
BseBI	CCWGG	5 cut(s)	340, 567, 1263, 1861, 2510
BseCI	ATCGAT	1 cut(s)	2859
BseDI	CCNNGG	4 cut(s)	43, 372, 565, 1860
BseJI	GATNNNNATC	4 cut(s)	329, 2118, 3096, 3579
BseLI	CCNNNNNNNGG	9 cut(s)	44, 263, 1619, 1699, 2515, 2713, 2852, 3236, 4300
BseMI	GCAATG	2 cut(s)	1480, 2916
BseMII	CTCAG	6 cut(s)	897, 1314, 1684, 2726, 2843, 3834
BsePI	GCGCGC	1 cut(s)	1288
BseRI	GAGGAG	2 cut(s)	2648, 3158
BseSI	GKGCMC	2 cut(s)	130, 1747
BseYI	CCCAGC	3 cut(s)	425, 1428, 2068
BsgI	GTGCAG	1 cut(s)	671
Bsh1236I	CGCG	1 cut(s)	1290
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	4 cut(s)	377, 1488, 2508, 4110
BshNI	GGYRCC	3 cut(s)	2203, 3197, 4290
BshTI	ACCGGT	1 cut(s)	3969
BshVI	ATCGAT	1 cut(s)	2859
BsiEI	CGRYCG	1 cut(s)	495
BsiHKAI	GWGCWC	7 cut(s)	237, 1447, 1747, 2598, 3025, 3541, 4194
BsiHKCI	CYCGRG	3 cut(s)	230, 832, 3953
BsiSI	CCGG	7 cut(s)	14, 378, 495, 1509, 3970, 4124, 4317
BsiWI	CGTACG	1 cut(s)	4025
BslFI	GGGAC	3 cut(s)	59, 418, 2051
BslI	CCNNNNNNNGG	9 cut(s)	44, 263, 1619, 1699, 2515, 2713, 2852, 3236, 4300
BsmAI	GTCTC	8 cut(s)	162, 506, 881, 918, 1064, 1926, 2630, 4210
BsmBI	CGTCTC	1 cut(s)	1064
BsmFI	GGGAC	3 cut(s)	59, 418, 2051
BsmI	GAATGC	2 cut(s)	1156, 1266
BsnI	GGCC	4 cut(s)	377, 1488, 2508, 4110
Bso31I	GGTCTC	2 cut(s)	162, 4210
BsoBI	CYCGRG	3 cut(s)	230, 832, 3953
Bsp1286I	GDGCHC	9 cut(s)	130, 237, 1447, 1747, 2598, 3025, 3465, 3541, 4194
Bsp13I	TCCGGA	1 cut(s)	13
Bsp1407I	TGTACA	1 cut(s)	858
BspACI	CCGC	8 cut(s)	108, 480, 1573, 1823, 2787, 2799, 3283, 3470
BspANI	GGCC	4 cut(s)	377, 1488, 2508, 4110
BspCNI	CTCAG	6 cut(s)	896, 1315, 1683, 2725, 2842, 3833
BspDI	ATCGAT	1 cut(s)	2859
BspEI	TCCGGA	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	1290
BspHI	TCATGA	2 cut(s)	2758, 4230
BspQI	GCTCTTC	1 cut(s)	3546
BspT107I	GGYRCC	3 cut(s)	2203, 3197, 4290
BspTI	CTTAAG	1 cut(s)	1988
BspTNI	GGTCTC	2 cut(s)	162, 4210
BsrBI	CCGCTC	2 cut(s)	1573, 3283
BsrDI	GCAATG	2 cut(s)	1480, 2916
BsrFI	RCCGGY	2 cut(s)	1508, 3969
BsrGI	TGTACA	1 cut(s)	858
BssAI	RCCGGY	2 cut(s)	1508, 3969
BssECI	CCNNGG	4 cut(s)	43, 372, 565, 1860
BssHII	GCGCGC	1 cut(s)	1288
BssNAI	GTATAC	1 cut(s)	4269
BssSI	CACGAG	1 cut(s)	1937
Bst1107I	GTATAC	1 cut(s)	4269
Bst2BI	CACGAG	1 cut(s)	1937
Bst2UI	CCWGG	5 cut(s)	340, 567, 1263, 1861, 2510
Bst6I	CTCTTC	4 cut(s)	301, 1929, 3546, 4023
BstAFI	CTTAAG	1 cut(s)	1988
BstAPI	GCANNNNNTGC	2 cut(s)	791, 3119
BstAUI	TGTACA	1 cut(s)	858
BstBAI	YACGTR	2 cut(s)	898, 1247
BstDEI	CTNAG	9 cut(s)	243, 883, 1323, 1670, 2129, 2567, 2712, 2829, 3820
BstDSI	CCRYGG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	3419
BstENI	CCTNNNNNAGG	1 cut(s)	2711
BstFNI	CGCG	1 cut(s)	1290
BstH2I	RGCGCY	2 cut(s)	1829, 4285
BstHHI	GCGC	6 cut(s)	149, 1290, 1292, 1828, 2971, 4284
BstMAI	GTCTC	8 cut(s)	162, 506, 881, 918, 1064, 1926, 2630, 4210
BstMCI	CGRYCG	1 cut(s)	495
BstNI	CCWGG	5 cut(s)	340, 567, 1263, 1861, 2510
BstNSI	RCATGY	3 cut(s)	2952, 3376, 3674
BstPI	GGTNACC	1 cut(s)	3419
BstSCI	CCNGG	5 cut(s)	338, 565, 1261, 1859, 2508
BstSFI	CTRYAG	1 cut(s)	2658
BstSLI	GKGCMC	2 cut(s)	130, 1747
BstSNI	TACGTA	2 cut(s)	898, 1247
BstUI	CGCG	1 cut(s)	1290
BstV2I	GAAGAC	1 cut(s)	3900
BstX2I	RGATCY	6 cut(s)	10, 730, 1840, 2548, 3091, 4208
BstYI	RGATCY	6 cut(s)	10, 730, 1840, 2548, 3091, 4208
BstZ17I	GTATAC	1 cut(s)	4269
Bsu15I	ATCGAT	1 cut(s)	2859
Bsu36I	CCTNAGG	1 cut(s)	2829
BsuI	GTATCC	2 cut(s)	3052, 3567
BsuRI	GGCC	4 cut(s)	377, 1488, 2508, 4110
BsuTUI	ATCGAT	1 cut(s)	2859
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	142
BtrI	CACGTC	1 cut(s)	3992
BtsI	GCAGTG	2 cut(s)	481, 558
CaiI	CAGNNNCTG	4 cut(s)	602, 791, 1715, 2879
CciI	TCATGA	2 cut(s)	2758, 4230
CfoI	GCGC	6 cut(s)	149, 1290, 1292, 1828, 2971, 4284
Cfr10I	RCCGGY	2 cut(s)	1508, 3969
Cfr13I	GGNCC	7 cut(s)	73, 405, 464, 773, 2065, 2496, 2506
ClaI	ATCGAT	1 cut(s)	2859
Csp6I	GTAC	9 cut(s)	35, 216, 859, 2477, 2729, 3154, 3376, 3440, 4026
CspAI	ACCGGT	1 cut(s)	3969
CspCI	CAANNNNNGTGG	4 cut(s)	1767, 1802, 3413, 3448
CviQI	GTAC	9 cut(s)	35, 216, 859, 2477, 2729, 3154, 3376, 3440, 4026
DdeI	CTNAG	9 cut(s)	243, 883, 1323, 1670, 2129, 2567, 2712, 2829, 3820
DraIII	CACNNNGTG	2 cut(s)	1484, 2723
DriI	GACNNNNNGTC	1 cut(s)	498
EaeI	YGGCCR	2 cut(s)	375, 4108
Eam1104I	CTCTTC	4 cut(s)	301, 1929, 3546, 4023
Eam1105I	GACNNNNNGTC	1 cut(s)	498
EarI	CTCTTC	4 cut(s)	301, 1929, 3546, 4023
Ecl136II	GAGCTC	2 cut(s)	235, 3023
Eco105I	TACGTA	2 cut(s)	898, 1247
Eco24I	GRGCYC	3 cut(s)	237, 3025, 3465
Eco31I	GGTCTC	2 cut(s)	162, 4210
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	6 cut(s)	73, 405, 464, 773, 2065, 2496
Eco53kI	GAGCTC	2 cut(s)	235, 3023
Eco57I	CTGAAG	8 cut(s)	285, 2052, 2555, 2764, 3423, 3464, 3627, 3894
Eco81I	CCTNAGG	1 cut(s)	2829
Eco88I	CYCGRG	3 cut(s)	230, 832, 3953
Eco91I	GGTNACC	1 cut(s)	3419
EcoICRI	GAGCTC	2 cut(s)	235, 3023
EcoNI	CCTNNNNNAGG	1 cut(s)	2711
EcoO109I	RGGNCCY	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	3419
EcoRII	CCWGG	5 cut(s)	338, 565, 1261, 1859, 2508
EcoRV	GATATC	1 cut(s)	331
EcoT22I	ATGCAT	5 cut(s)	367, 1019, 3115, 3331, 3342
EcoT38I	GRGCYC	3 cut(s)	237, 3025, 3465
Esp3I	CGTCTC	1 cut(s)	1064
FalI	AAGNNNNNCTT	4 cut(s)	3045, 3077, 3293, 3325
FaqI	GGGAC	3 cut(s)	59, 418, 2051
FauI	CCCGC	2 cut(s)	1566, 2792
FauNDI	CATATG	2 cut(s)	188, 3505
FblI	GTMKAC	3 cut(s)	3994, 4159, 4268
FriOI	GRGCYC	3 cut(s)	237, 3025, 3465
FspBI	CTAG	3 cut(s)	414, 1658, 2138
GlaI	GCGC	6 cut(s)	148, 1289, 1291, 1827, 2970, 4283
GsaI	CCCAGC	3 cut(s)	429, 1432, 2072
HaeII	RGCGCY	2 cut(s)	1829, 4285
HaeIII	GGCC	4 cut(s)	377, 1488, 2508, 4110
HapII	CCGG	7 cut(s)	14, 378, 495, 1509, 3970, 4124, 4317
HhaI	GCGC	6 cut(s)	149, 1290, 1292, 1828, 2971, 4284
Hin6I	GCGC	6 cut(s)	147, 1288, 1290, 1826, 2969, 4282
HinP1I	GCGC	6 cut(s)	147, 1288, 1290, 1826, 2969, 4282
HincII	GTYRAC	1 cut(s)	4160
HindII	GTYRAC	1 cut(s)	4160
HindIII	AAGCTT	4 cut(s)	1615, 2354, 2821, 2988
HpaII	CCGG	7 cut(s)	14, 378, 495, 1509, 3970, 4124, 4317
HphI	GGTGA	2 cut(s)	2675, 3888
Hpy166II	GTNNAC	6 cut(s)	1745, 2373, 3896, 3995, 4160, 4269
Hpy8I	GTNNAC	6 cut(s)	1745, 2373, 3896, 3995, 4160, 4269
HpyAV	CCTTC	9 cut(s)	1181, 1357, 2936, 3051, 3244, 3268, 3439, 4190, 4400
HpyCH4IV	ACGT	7 cut(s)	897, 918, 1246, 2075, 2194, 3193, 3991
HpyF3I	CTNAG	9 cut(s)	243, 883, 1323, 1670, 2129, 2567, 2712, 2829, 3820
HpySE526I	ACGT	7 cut(s)	897, 918, 1246, 2075, 2194, 3193, 3991
HspAI	GCGC	6 cut(s)	147, 1288, 1290, 1826, 2969, 4282
Kpn2I	TCCGGA	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	3546
LmnI	GCTCC	6 cut(s)	342, 788, 912, 1956, 2895, 3028
MaeI	CTAG	3 cut(s)	414, 1658, 2138
MaeII	ACGT	7 cut(s)	897, 918, 1246, 2075, 2194, 3193, 3991
MaeIII	GTNAC	6 cut(s)	914, 1678, 2310, 3419, 3828, 4319
MbiI	CCGCTC	2 cut(s)	1573, 3283
MfeI	CAATTG	2 cut(s)	1697, 3428
MflI	RGATCY	6 cut(s)	10, 730, 1840, 2548, 3091, 4208
MhlI	GDGCHC	9 cut(s)	130, 237, 1447, 1747, 2598, 3025, 3465, 3541, 4194
MlsI	TGGCCA	1 cut(s)	4110
MluNI	TGGCCA	1 cut(s)	4110
MlyI	GAGTC	5 cut(s)	390, 824, 1334, 2111, 4394
MmeI	TCCRAC	8 cut(s)	244, 800, 1029, 1281, 1605, 3572, 4066, 4408
Mox20I	TGGCCA	1 cut(s)	4110
Mph1103I	ATGCAT	5 cut(s)	367, 1019, 3115, 3331, 3342
MroI	TCCGGA	1 cut(s)	13
MroXI	GAANNNNTTC	4 cut(s)	1534, 1773, 2766, 4017
MscI	TGGCCA	1 cut(s)	4110
MslI	CAYNNNNRTG	4 cut(s)	1062, 1275, 2609, 3835
Msp20I	TGGCCA	1 cut(s)	4110
MspA1I	CMGCKG	1 cut(s)	1823
MspCI	CTTAAG	1 cut(s)	1988
MspI	CCGG	7 cut(s)	14, 378, 495, 1509, 3970, 4124, 4317
MspR9I	CCNGG	5 cut(s)	340, 567, 1263, 1861, 2510
MunI	CAATTG	2 cut(s)	1697, 3428
Mva1269I	GAATGC	2 cut(s)	1156, 1266
MvaI	CCWGG	5 cut(s)	340, 567, 1263, 1861, 2510
MvnI	CGCG	1 cut(s)	1290
NdeI	CATATG	2 cut(s)	188, 3505
NmeAIII	GCCGAG	2 cut(s)	24, 1093
NmuCI	GTSAC	3 cut(s)	1678, 3828, 4319
NsiI	ATGCAT	5 cut(s)	367, 1019, 3115, 3331, 3342
NspI	RCATGY	3 cut(s)	2952, 3376, 3674
OliI	CACNNNNGTG	1 cut(s)	2609
PaeR7I	CTCGAG	3 cut(s)	230, 832, 3953
PagI	TCATGA	2 cut(s)	2758, 4230
PauI	GCGCGC	1 cut(s)	1288
PciI	ACATGT	2 cut(s)	3372, 3670
PciSI	GCTCTTC	1 cut(s)	3546
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 2865
PctI	GAATGC	2 cut(s)	1156, 1266
PdmI	GAANNNNTTC	4 cut(s)	1534, 1773, 2766, 4017
Pfl23II	CGTACG	1 cut(s)	4025
PflFI	GACNNNGTC	1 cut(s)	1324
PflMI	CCANNNNNTGG	4 cut(s)	1619, 1699, 2852, 3236
PfoI	TCCNGGA	1 cut(s)	338
PinAI	ACCGGT	1 cut(s)	3969
PleI	GAGTC	5 cut(s)	389, 824, 1333, 2110, 4394
PpsI	GAGTC	5 cut(s)	389, 824, 1333, 2110, 4394
Ppu21I	YACGTR	2 cut(s)	898, 1247
PpuMI	RGGWCCY	1 cut(s)	73
PscI	ACATGT	2 cut(s)	3372, 3670
PshBI	ATTAAT	1 cut(s)	2049
PsiI	TTATAA	3 cut(s)	1308, 2931, 3176
Psp124BI	GAGCTC	2 cut(s)	237, 3025
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	5 cut(s)	338, 565, 1261, 1859, 2508
PspEI	GGTNACC	1 cut(s)	3419
PspFI	CCCAGC	3 cut(s)	425, 1428, 2068
PspGI	CCWGG	5 cut(s)	338, 565, 1261, 1859, 2508
PspLI	CGTACG	1 cut(s)	4025
PspPI	GGNCC	7 cut(s)	73, 405, 464, 773, 2065, 2496, 2506
PspPPI	RGGWCCY	1 cut(s)	73
PspXI	VCTCGAGB	2 cut(s)	230, 832
PsrI	GAACNNNNNNTAC	4 cut(s)	2721, 2753, 3965, 3997
PstNI	CAGNNNCTG	4 cut(s)	602, 791, 1715, 2879
PsuI	RGATCY	6 cut(s)	10, 730, 1840, 2548, 3091, 4208
PsyI	GACNNNGTC	1 cut(s)	1324
PteI	GCGCGC	1 cut(s)	1288
RsaI	GTAC	9 cut(s)	36, 217, 860, 2478, 2730, 3155, 3377, 3441, 4027
RsaNI	GTAC	9 cut(s)	35, 216, 859, 2477, 2729, 3154, 3376, 3440, 4026
RseI	CAYNNNNRTG	4 cut(s)	1062, 1275, 2609, 3835
SacI	GAGCTC	2 cut(s)	237, 3025
SalI	GTCGAC	1 cut(s)	4158
SapI	GCTCTTC	1 cut(s)	3546
Sau96I	GGNCC	7 cut(s)	73, 405, 464, 773, 2065, 2496, 2506
ScaI	AGTACT	1 cut(s)	3441
SchI	GAGTC	5 cut(s)	390, 824, 1334, 2111, 4394
ScrFI	CCNGG	5 cut(s)	340, 567, 1263, 1861, 2510
SduI	GDGCHC	9 cut(s)	130, 237, 1447, 1747, 2598, 3025, 3465, 3541, 4194
SfcI	CTRYAG	1 cut(s)	2658
Sfr274I	CTCGAG	3 cut(s)	230, 832, 3953
SinI	GGWCC	6 cut(s)	73, 405, 464, 773, 2065, 2496
SlaI	CTCGAG	3 cut(s)	230, 832, 3953
SmiMI	CAYNNNNRTG	4 cut(s)	1062, 1275, 2609, 3835
SmlI	CTYRAG	9 cut(s)	230, 832, 1046, 1988, 2972, 3163, 3953, 4187, 4298
SmoI	CTYRAG	9 cut(s)	230, 832, 1046, 1988, 2972, 3163, 3953, 4187, 4298
SnaBI	TACGTA	2 cut(s)	898, 1247
SsiI	CCGC	8 cut(s)	108, 480, 1573, 1823, 2787, 2799, 3283, 3470
SspI	AATATT	4 cut(s)	1194, 1419, 1609, 2935
SspMI	CTAG	3 cut(s)	414, 1658, 2138
SstI	GAGCTC	2 cut(s)	237, 3025
StyD4I	CCNGG	5 cut(s)	338, 565, 1261, 1859, 2508
TaiI	ACGT	7 cut(s)	900, 921, 1249, 2078, 2197, 3196, 3994
TaqI	TCGA	9 cut(s)	69, 222, 231, 833, 2005, 2859, 3586, 3954, 4159
TatI	WGTACW	4 cut(s)	858, 2728, 3153, 3439
TauI	GCSGC	4 cut(s)	482, 1826, 2789, 3473
TseFI	GTSAC	3 cut(s)	1678, 3828, 4319
Tsp45I	GTSAC	3 cut(s)	1678, 3828, 4319
TspGWI	ACGGA	5 cut(s)	477, 722, 1047, 4043, 4254
Tth111I	GACNNNGTC	1 cut(s)	1324
Van91I	CCANNNNNTGG	4 cut(s)	1619, 1699, 2852, 3236
Vha464I	CTTAAG	1 cut(s)	1988
VneI	GTGCAC	1 cut(s)	1743
VpaK11BI	GGWCC	6 cut(s)	73, 405, 464, 773, 2065, 2496
VspI	ATTAAT	1 cut(s)	2049
XagI	CCTNNNNNAGG	1 cut(s)	2711
XapI	RAATTY	7 cut(s)	251, 1368, 1434, 1888, 1898, 2021, 4312
XceI	RCATGY	3 cut(s)	2952, 3376, 3674
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3507, 4254
XhoI	CTCGAG	3 cut(s)	230, 832, 3953
XmiI	GTMKAC	3 cut(s)	3994, 4159, 4268
XmnI	GAANNNNTTC	4 cut(s)	1534, 1773, 2766, 4017
XspI	CTAG	3 cut(s)	414, 1658, 2138
ZrmI	AGTACT	1 cut(s)	3441
Zsp2I	ATGCAT	5 cut(s)	367, 1019, 3115, 3331, 3342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.