Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Reverse (-)

48991224 .. 49007532

Gene Structure 16309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG350000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3567 bp

ATGGAAGTGCCAATCCTCGGCAGCGATTCACTGAAATGGATTGAGTTCCCTATTCCTTCTTCTAATGCCGCCACCGCCACCGCCGATGCTGATACTTGTGCCCCTCTCACTCACGATTGCGCTTCTTCCATCGCCATTGGCGACCCTCCTACACATCTCATCTGGAGAATCCACAAGCATCTCCCTCACTCTCTCGAATTACTTGAGCTCTCTGCTAACAAAGAATTTCCAAAACTCGGACTGCGAATCACTTTTCCACAAGCACTCTCTTCCTCCGTTTTTGTTTGCAAAAATGAGATTGATGTCGGTTCCAGGAGCCACCCCTATTTGCTCTATGCATTGACCGTCGCCGGAGTCGCTTACCTTTTGGGACTTGGAACTGTCTCTAGTTATGCTTCCAACTCTGTTATTAGAGAGTTTAGCTTGCATCCCCACGGACCTATAACCAGTGCCGCAGCAACGCCAACCGGGTGTCTTGTTGTAGGTCGGAATGACGGCTCACTTGCTTGCTTTCAACTCACACTTGAATCCACTGCTCCTGGTTTTCTGCAAGAGCTACGGGATGATCCAGGAATCGGTAGTTTGTGGGGTTTCATGTCAAGGGGTAGGATGGTAGGCGCTGTGCAGGACTTGGCTATATCTATGGTTCATGGGAAACCACTTATATTCGTTATTCATACGGACGGGGTGTTACGAGTATGGGATATATCATTTCATAGCAGGCTCTTTTCCCATAAGATGAACAGTCTAACAATGGCAGGAGCTGCATTGGTAAGGTTGTGGGTTGGTCAAGCTGACAATGATTCGAGCATAATTCCTTTGGCAATCTTGTACAGGCATGATTCGGAAATGAGCTCAGAGACGATCTACGTATATAGCCTCCATTGTAACGTGGGAGACAGAATTGTTTTATCGATGGATCCTTCAGAACAAATTATTCCTATTGAGGAGGATGGATGGATTGATGTCAAACTTATTTCCAACAAGATATGCATATTGAAAAATCAGGGACTGGTGCTTCACAAGTTGTTGCATACAAATGTCAACATGGTAGATGCAGTTTGTTATGCTTTGCAAGAGGACTTCGTTGCAGATCAACTCTTTCAAAGTTCTGAACATTCTTCGGATGACCTTCTTTTGATAACTCATTCAATATTTTCATCTTCAAAGGATCATATTCTACCCGTTGTATCTTCTATTTTCTTACGTAGGCTGCTTCTTCCTGGCATTCATCATAATGCTGCTTTGCGCACAACTTTGTTGGATTATAATAGGCACTGGACTGAGTCAGATTTCCACTCCTTAACTGCTGACGGGTTGAAGAAGGAAATTCTTTCCCTGATTGAACATGAGGGTCTGACTGGTAATTCATCGTCAATATTTTGCTGCTGGAAAATTTTTTGTGCTCGCTATTTCCAGAACTGGTGCAAGAGCAATGCACCATGTGGCCTGCTTGTTGATTCCTCAACCGGCACTGTTGGTTTAATTAGAAAGAGTTCAGTATCTCTTTTTCGTTCTTTGGAAGATATTGAGCGGGTTAATGATGGCTCTTTGGATGAACTTGGCAATTTTCCAAGCTTTGGGTTGGATTCATTTGATGAGGCTCGTGATTGTGAGCTACTTGCTGAAATGCTCAGATGTGTCATTAACATCAGCCAGCAATTGGGCAAAACAGCTTCTGCTATATTTTATGAATCACTCATTAGTGCACCACCAGTTATCTCATCTGAAGACATTATTCCGCGCCTATTGAAGATATTAGAAACTGGATATAGTTCAACAGCCGCAGTGCTTCATATATCAGATCTTGGACCTGATGTTGCCTGGGAGAAAAATCTAGCAGATCACAAAAATTTGAGGAAATTTTCAATTGACATGATGTTGTCTCTTCATGCTTTGCACGAGAAATCTGGCACATGGAGCCGTATTTTGAGTGTGATTGAGAACTATCTAAACTATCTCATACCTCGGAAAATTATACAAAAATTTGATGCTGTAGTAGCATTGGATATCAATGCCTCCATCTTGGTCCAGGCCATGTCTCAAGTTGCAAAGGTTATGTTTGAGTCTGCACTGGATATTCATCTGTTTCTAAGCTATCTAGTAAGCATTAGTGGGCAGATCAATATGCTACATGATGATATATCCAAAATACAGCTTGAGTTGGTTCCGATGATTCAAGAAATCATTTATGAGTGGCTTCTCTTACATTTCTTTGCCACCACACCATCTGAATCAGCTGCAATTGAAGATTTCAGCTCTCAACTTTCATTGTTACAAATTGATAGCAACACAGGCAGAAGATCATGGAATGAGAAGCTTGGGAAGTGCGAGTTCACTCTGGCTTTTATATTCTTACTTAATGTTAGAAGTTCCTCCAAAGACCAGAGCCACTTTTGTTCAAGAAGCATATCAAACGTTCAGGACATAATTGATTCAATACGAGAATTTGCTAGCTGGATCATGTGGGGCCAGAATGGGGAATCCCTTACTGTCCTGAGGCGTGCAGCGGATCTTGCATTGATCCTGCTAAGGCACGGGCAGTATGATGCTGTTGAGCACCTACTCACTATTGTGGAGGCACATTTACAAAAGGAGAAGACTTCTCATCGTATTCAAGCTACAGATGGCGGATGGTGCATACTGCATCATCTTTTAGGATGCTGTTTCCTTGCTCAAGCACATCGTGGATTACATGGGGTCCTGAAAGAGAGGAAAGTTCATGAAGCTGTATGTTGTTTCTTCAGAGCTGCATCTGGAAACGGCTCAGCTCAGGCTTTACAAAGCTTGCCTCAGGAAGCGGGGTTGCCACATCTTGGCATCGATGGTAGCGTATCAGATGCTGCATGGAAGCTCCATTACTATCAGTGGGCAATGCAGATATTTGAGCAATATAATATTAGTGAAGGTGCATGTCAGTTTGCTCTTGCTGCGCTTGAGCAAGTTGAGGAAGCGTATAGTGCAAACAATGAGTCCCATGACAGAGCTCCATTTGATGAATCAGTATCTACCATTAAAGGAAGACTTTGGGCACATGTTTGCAAGTTTACTTTAGATCTCAATCTCTTTTATGATGCGTACTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAGCACATCTGGTTGAGGCGTCTTATAATTGTTCTTTATGAACGTGGTGCCATAAAGATTCTTTGTGGTGGTCAGCTACCATTCATTGGTCTTACAGAGAAGGTAGAACAAGAGCTTGCATGGAAGGCAGAGCGGTCAGACATTTTAGCAAAGCCAAACTTATATAAGTTGCTTTATGCATTTGAAATGCATCGGCATAACTGGCGAAAAGCAGCAAGCTACATGTACCTTTATTCTGCTCGTTTGAGAACTGAAACATCTCTGAAAGGGTACCAGCAATTGTGGCGAGCACTGAAGGAGATACTGAATGGGCTCTCTGCTGCTATCAACGCACTTCATCTTGTTCATCCAGCATATGCTTGGATTGATCCTCTCCTTGAGAGAAATGCTATTCACAATGAGCAGTATCCAAGTAAAAAGGCTAGAATAACAATTGAAGACCAGTGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

1188

Amino Acids

132.81

Weight (kDa)

5.93

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	53 - 511	2.9e-55	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	528 - 722	8.1e-91	NUP160, helical domain
TPR_NUP160_120_M	PF23354	901 - 1152	8.6e-35	NUP160/120 middle TPR
HEAT_Nup120	PF23300	902 - 1051	2.1e-12	Nucleoporin Nup120, HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1269, 3140
Acc16I	TGCGCA	1 cut(s)	1250
Acc65I	GGTACC	1 cut(s)	3384
AccB1I	GGYRCC	2 cut(s)	3161, 3384
AccB7I	CCANNNNNTGG	4 cut(s)	1580, 1663, 2816, 3200
AccBSI	CCGCTC	2 cut(s)	1534, 3247
AccII	CGCG	1 cut(s)	1744
AclI	AACGTT	1 cut(s)	2418
AclWI	GGATC	8 cut(s)	560, 914, 927, 1179, 2468, 2518, 2520, 3476
AcsI	RAATTY	7 cut(s)	224, 1329, 1395, 1852, 1862, 1985, 2447
AcuI	CTGAAG	4 cut(s)	909, 1749, 2728, 3428
AcyI	GRCGYC	1 cut(s)	3133
AdeI	CACNNNGTG	2 cut(s)	1445, 2687
AfaI	GTAC	4 cut(s)	833, 3080, 3341, 3386
AfiI	CCNNNNNNNGG	8 cut(s)	17, 236, 575, 1580, 1663, 2479, 2816, 3200
AflIII	ACRYGT	2 cut(s)	3034, 3336
AjnI	CCWGG	6 cut(s)	311, 538, 568, 1222, 1823, 2031
AleI	CACNNNNGTG	1 cut(s)	2573
Alw21I	GWGCWC	7 cut(s)	210, 857, 1408, 1711, 2562, 2989, 3406
Alw26I	GTCTC	5 cut(s)	388, 854, 891, 1890, 2046
Alw44I	GTGCAC	1 cut(s)	1707
AlwI	GGATC	8 cut(s)	560, 914, 927, 1179, 2468, 2518, 2520, 3476
AlwNI	CAGNNNCTG	4 cut(s)	764, 1012, 1679, 2843
AoxI	GGCC	3 cut(s)	1447, 2034, 2470
ApaLI	GTGCAC	1 cut(s)	1707
ApoI	RAATTY	7 cut(s)	224, 1329, 1395, 1852, 1862, 1985, 2447
ArsI	GACNNNNNNTTYG	2 cut(s)	2957, 2989
Asp700I	GAANNNNTTC	1 cut(s)	1495
Asp718I	GGTACC	1 cut(s)	3384
AspLEI	GCGC	5 cut(s)	122, 620, 1251, 1746, 2935
AspS9I	GGNCC	5 cut(s)	437, 1811, 2029, 2470, 2701
AsuC2I	CCSGG	1 cut(s)	469
AsuNHI	GCTAGC	1 cut(s)	2453
AvaII	GGWCC	4 cut(s)	437, 1811, 2029, 2701
AxyI	CCTNAGG	2 cut(s)	2498, 2793
BaeGI	GKGCMC	3 cut(s)	103, 1711, 3034
BamHI	GGATCC	1 cut(s)	919
BanI	GGYRCC	2 cut(s)	3161, 3384
BanII	GRGCYC	4 cut(s)	210, 857, 2989, 3429
BarI	GAAGNNNNNNTAC	2 cut(s)	2843, 2875
BauI	CACGAG	2 cut(s)	1605, 1901
BbsI	GAAGAC	4 cut(s)	1737, 2606, 3028, 3558
Bbv12I	GWGCWC	7 cut(s)	210, 857, 1408, 1711, 2562, 2989, 3406
BceAI	ACGGC	3 cut(s)	511, 1908, 2779
BciT130I	CCWGG	6 cut(s)	313, 540, 570, 1224, 1825, 2033
BciVI	GTATCC	1 cut(s)	3531
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	5 cut(s)	388, 854, 891, 1890, 2046
BfaI	CTAG	5 cut(s)	387, 1838, 2102, 2454, 3537
BfmI	CTRYAG	2 cut(s)	1995, 2622
BfoI	RGCGCY	1 cut(s)	621
BfuI	GTATCC	1 cut(s)	3531
BglII	AGATCT	2 cut(s)	1804, 3055
BlpI	GCTNAGC	1 cut(s)	2767
Bme1390I	CCNGG	7 cut(s)	313, 469, 540, 570, 1224, 1825, 2033
Bme18I	GGWCC	4 cut(s)	437, 1811, 2029, 2701
BmgT120I	GGNCC	5 cut(s)	437, 1811, 2029, 2470, 2701
BmiI	GGNNCC	9 cut(s)	310, 317, 921, 1922, 2169, 2471, 2702, 3163, 3386
BmrFI	CCNGG	7 cut(s)	313, 469, 540, 570, 1224, 1825, 2033
BmtI	GCTAGC	1 cut(s)	2457
BpiI	GAAGAC	4 cut(s)	1737, 2606, 3028, 3558
BpmI	CTGGAG	1 cut(s)	184
Bpu10I	CCTNAGC	2 cut(s)	2531, 2772
Bpu1102I	GCTNAGC	1 cut(s)	2767
BpuEI	CTTGAG	6 cut(s)	224, 2028, 2180, 2661, 2957, 3512
BpuMI	CCSGG	1 cut(s)	469
Bsa29I	ATCGAT	2 cut(s)	914, 2823
BsaAI	YACGTR	2 cut(s)	871, 1208
BsaBI	GATNNNNATC	2 cut(s)	2082, 3060
BsaHI	GRCGYC	1 cut(s)	3133
BsaJI	CCNNGG	4 cut(s)	16, 433, 1824, 1967
Bsc4I	CCNNNNNNNGG	8 cut(s)	17, 236, 575, 1580, 1663, 2479, 2816, 3200
Bse118I	RCCGGY	1 cut(s)	1469
Bse21I	CCTNAGG	2 cut(s)	2498, 2793
Bse3DI	GCAATG	2 cut(s)	1441, 2880
Bse8I	GATNNNNATC	2 cut(s)	2082, 3060
BseBI	CCWGG	6 cut(s)	313, 540, 570, 1224, 1825, 2033
BseCI	ATCGAT	2 cut(s)	914, 2823
BseDI	CCNNGG	4 cut(s)	16, 433, 1824, 1967
BseJI	GATNNNNATC	2 cut(s)	2082, 3060
BseLI	CCNNNNNNNGG	8 cut(s)	17, 236, 575, 1580, 1663, 2479, 2816, 3200
BseMI	GCAATG	2 cut(s)	1441, 2880
BseMII	CTCAG	7 cut(s)	870, 1275, 1648, 2489, 2781, 2786, 2807
BseRI	GAGGAG	2 cut(s)	962, 3122
BseSI	GKGCMC	3 cut(s)	103, 1711, 3034
BsgI	GTGCAG	3 cut(s)	644, 2055, 2526
Bsh1236I	CGCG	1 cut(s)	1744
BshFI	GGCC	3 cut(s)	1449, 2036, 2472
BshNI	GGYRCC	2 cut(s)	3161, 3384
BshVI	ATCGAT	2 cut(s)	914, 2823
BsiHKAI	GWGCWC	7 cut(s)	210, 857, 1408, 1711, 2562, 2989, 3406
BsiSI	CCGG	3 cut(s)	351, 468, 1470
BslFI	GGGAC	3 cut(s)	384, 1023, 2959
BslI	CCNNNNNNNGG	8 cut(s)	17, 236, 575, 1580, 1663, 2479, 2816, 3200
BsmAI	GTCTC	5 cut(s)	388, 854, 891, 1890, 2046
BsmBI	CGTCTC	1 cut(s)	854
BsmFI	GGGAC	3 cut(s)	384, 1023, 2959
BsmI	GAATGC	1 cut(s)	1227
BsnI	GGCC	3 cut(s)	1449, 2036, 2472
Bsp1407I	TGTACA	1 cut(s)	831
Bsp1720I	GCTNAGC	1 cut(s)	2767
BspANI	GGCC	3 cut(s)	1449, 2036, 2472
BspCNI	CTCAG	7 cut(s)	869, 1276, 1647, 2490, 2780, 2785, 2806
BspDI	ATCGAT	2 cut(s)	914, 2823
BspFNI	CGCG	1 cut(s)	1744
BspHI	TCATGA	1 cut(s)	2722
BspLI	GGNNCC	9 cut(s)	310, 317, 921, 1922, 2169, 2471, 2702, 3163, 3386
BspOI	GCTAGC	1 cut(s)	2457
BspPI	GGATC	8 cut(s)	560, 914, 927, 1179, 2468, 2518, 2520, 3476
BspT107I	GGYRCC	2 cut(s)	3161, 3384
BsrBI	CCGCTC	2 cut(s)	1534, 3247
BsrDI	GCAATG	2 cut(s)	1441, 2880
BsrFI	RCCGGY	1 cut(s)	1469
BsrGI	TGTACA	1 cut(s)	831
BssAI	RCCGGY	1 cut(s)	1469
BssECI	CCNNGG	4 cut(s)	16, 433, 1824, 1967
BssNI	GRCGYC	1 cut(s)	3133
BssSI	CACGAG	2 cut(s)	1605, 1901
Bst2BI	CACGAG	2 cut(s)	1605, 1901
Bst2UI	CCWGG	6 cut(s)	313, 540, 570, 1224, 1825, 2033
Bst4CI	ACNGT	6 cut(s)	346, 382, 746, 1477, 2494, 3083
Bst6I	CTCTTC	2 cut(s)	274, 1893
BstACI	GRCGYC	1 cut(s)	3133
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstAUI	TGTACA	1 cut(s)	831
BstBAI	YACGTR	2 cut(s)	871, 1208
BstDEI	CTNAG	9 cut(s)	856, 1284, 1634, 2093, 2498, 2531, 2767, 2772, 2793
BstDSI	CCRYGG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	1744
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	5 cut(s)	122, 620, 1251, 1746, 2935
BstMAI	GTCTC	5 cut(s)	388, 854, 891, 1890, 2046
BstNI	CCWGG	6 cut(s)	313, 540, 570, 1224, 1825, 2033
BstNSI	RCATGY	3 cut(s)	2916, 3038, 3340
BstSCI	CCNGG	7 cut(s)	311, 467, 538, 568, 1222, 1823, 2031
BstSFI	CTRYAG	2 cut(s)	1995, 2622
BstSLI	GKGCMC	3 cut(s)	103, 1711, 3034
BstSNI	TACGTA	2 cut(s)	871, 1208
BstUI	CGCG	1 cut(s)	1744
BstV2I	GAAGAC	4 cut(s)	1737, 2606, 3028, 3558
BstX2I	RGATCY	4 cut(s)	919, 1804, 2512, 3055
BstYI	RGATCY	4 cut(s)	919, 1804, 2512, 3055
Bsu15I	ATCGAT	2 cut(s)	914, 2823
Bsu36I	CCTNAGG	2 cut(s)	2498, 2793
BsuI	GTATCC	1 cut(s)	3531
BsuRI	GGCC	3 cut(s)	1449, 2036, 2472
BsuTUI	ATCGAT	2 cut(s)	914, 2823
BtgI	CCRYGG	1 cut(s)	433
BtgZI	GCGATG	1 cut(s)	115
BtsI	GCAGTG	2 cut(s)	531, 1794
CaiI	CAGNNNCTG	4 cut(s)	764, 1012, 1679, 2843
CciI	TCATGA	1 cut(s)	2722
CfoI	GCGC	5 cut(s)	122, 620, 1251, 1746, 2935
Cfr10I	RCCGGY	1 cut(s)	1469
Cfr13I	GGNCC	5 cut(s)	437, 1811, 2029, 2470, 2701
ClaI	ATCGAT	2 cut(s)	914, 2823
CseI	GACGC	1 cut(s)	3122
Csp6I	GTAC	4 cut(s)	832, 3079, 3340, 3385
CviQI	GTAC	4 cut(s)	832, 3079, 3340, 3385
DdeI	CTNAG	9 cut(s)	856, 1284, 1634, 2093, 2498, 2531, 2767, 2772, 2793
DraIII	CACNNNGTG	2 cut(s)	1445, 2687
Eam1104I	CTCTTC	2 cut(s)	274, 1893
EarI	CTCTTC	2 cut(s)	274, 1893
EciI	GGCGGA	1 cut(s)	2646
Ecl136II	GAGCTC	3 cut(s)	208, 855, 2987
Eco105I	TACGTA	2 cut(s)	871, 1208
Eco24I	GRGCYC	4 cut(s)	210, 857, 2989, 3429
Eco32I	GATATC	1 cut(s)	2011
Eco47I	GGWCC	4 cut(s)	437, 1811, 2029, 2701
Eco53kI	GAGCTC	3 cut(s)	208, 855, 2987
Eco57I	CTGAAG	4 cut(s)	909, 1749, 2728, 3428
Eco81I	CCTNAGG	2 cut(s)	2498, 2793
EcoICRI	GAGCTC	3 cut(s)	208, 855, 2987
EcoO109I	RGGNCCY	1 cut(s)	2701
EcoRII	CCWGG	6 cut(s)	311, 538, 568, 1222, 1823, 2031
EcoRV	GATATC	1 cut(s)	2011
EcoT22I	ATGCAT	4 cut(s)	340, 995, 3295, 3306
EcoT38I	GRGCYC	4 cut(s)	210, 857, 2989, 3429
Esp3I	CGTCTC	1 cut(s)	854
FalI	AAGNNNNNCTT	4 cut(s)	3009, 3041, 3257, 3289
FaqI	GGGAC	3 cut(s)	384, 1023, 2959
FauI	CCCGC	2 cut(s)	1527, 2794
FauNDI	CATATG	1 cut(s)	3469
FriOI	GRGCYC	4 cut(s)	210, 857, 2989, 3429
FspBI	CTAG	5 cut(s)	387, 1838, 2102, 2454, 3537
FspI	TGCGCA	1 cut(s)	1250
GlaI	GCGC	5 cut(s)	121, 619, 1250, 1745, 2934
GsuI	CTGGAG	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	621
HaeIII	GGCC	3 cut(s)	1449, 2036, 2472
HapII	CCGG	3 cut(s)	351, 468, 1470
HgaI	GACGC	1 cut(s)	3122
HhaI	GCGC	5 cut(s)	122, 620, 1251, 1746, 2935
Hin1I	GRCGYC	1 cut(s)	3133
Hin6I	GCGC	5 cut(s)	120, 618, 1249, 1744, 2933
HinP1I	GCGC	5 cut(s)	120, 618, 1249, 1744, 2933
HincII	GTYRAC	1 cut(s)	1045
HindII	GTYRAC	1 cut(s)	1045
HindIII	AAGCTT	3 cut(s)	1576, 2318, 2785
HpaII	CCGG	3 cut(s)	351, 468, 1470
Hpy166II	GTNNAC	4 cut(s)	1045, 1709, 2337, 3048
Hpy8I	GTNNAC	4 cut(s)	1045, 1709, 2337, 3048
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	8 cut(s)	66, 933, 1142, 1318, 2900, 3208, 3232, 3403
HpyCH4III	ACNGT	6 cut(s)	346, 382, 746, 1477, 2494, 3083
HpyCH4IV	ACGT	5 cut(s)	870, 891, 1207, 2418, 3157
HpyF3I	CTNAG	9 cut(s)	856, 1284, 1634, 2093, 2498, 2531, 2767, 2772, 2793
HpySE526I	ACGT	5 cut(s)	870, 891, 1207, 2418, 3157
Hsp92I	GRCGYC	1 cut(s)	3133
HspAI	GCGC	5 cut(s)	120, 618, 1249, 1744, 2933
KpnI	GGTACC	1 cut(s)	3388
LmnI	GCTCC	6 cut(s)	315, 541, 761, 1920, 2859, 2992
MaeI	CTAG	5 cut(s)	387, 1838, 2102, 2454, 3537
MaeII	ACGT	5 cut(s)	870, 891, 1207, 2418, 3157
MaeIII	GTNAC	3 cut(s)	690, 887, 2274
MbiI	CCGCTC	2 cut(s)	1534, 3247
MfeI	CAATTG	5 cut(s)	1661, 1869, 2244, 3392, 3546
MflI	RGATCY	4 cut(s)	919, 1804, 2512, 3055
MlyI	GAGTC	4 cut(s)	363, 1295, 2075, 2981
MmeI	TCCRAC	5 cut(s)	423, 467, 1005, 1242, 1566
Mph1103I	ATGCAT	4 cut(s)	340, 995, 3295, 3306
MroXI	GAANNNNTTC	1 cut(s)	1495
MseI	TTAA	6 cut(s)	1304, 1484, 1539, 1647, 2361, 3015
MslI	CAYNNNNRTG	4 cut(s)	34, 1038, 1236, 2573
MspA1I	CMGCKG	2 cut(s)	2240, 2510
MspI	CCGG	3 cut(s)	351, 468, 1470
MspR9I	CCNGG	7 cut(s)	313, 469, 540, 570, 1224, 1825, 2033
MunI	CAATTG	5 cut(s)	1661, 1869, 2244, 3392, 3546
Mva1269I	GAATGC	1 cut(s)	1227
MvaI	CCWGG	6 cut(s)	313, 540, 570, 1224, 1825, 2033
MvnI	CGCG	1 cut(s)	1744
NciI	CCSGG	1 cut(s)	469
NdeI	CATATG	1 cut(s)	3469
NheI	GCTAGC	1 cut(s)	2453
NlaIV	GGNNCC	9 cut(s)	310, 317, 921, 1922, 2169, 2471, 2702, 3163, 3386
NsbI	TGCGCA	1 cut(s)	1250
NsiI	ATGCAT	4 cut(s)	340, 995, 3295, 3306
NspI	RCATGY	3 cut(s)	2916, 3038, 3340
OliI	CACNNNNGTG	1 cut(s)	2573
PagI	TCATGA	1 cut(s)	2722
PciI	ACATGT	2 cut(s)	3034, 3336
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 2829
PctI	GAATGC	1 cut(s)	1227
PdmI	GAANNNNTTC	1 cut(s)	1495
PflFI	GACNNNGTC	1 cut(s)	1285
PflMI	CCANNNNNTGG	4 cut(s)	1580, 1663, 2816, 3200
PfoI	TCCNGGA	2 cut(s)	311, 568
PleI	GAGTC	4 cut(s)	362, 1294, 2074, 2980
PpsI	GAGTC	4 cut(s)	362, 1294, 2074, 2980
Ppu21I	YACGTR	2 cut(s)	871, 1208
PpuMI	RGGWCCY	1 cut(s)	2701
PscI	ACATGT	2 cut(s)	3034, 3336
PsiI	TTATAA	2 cut(s)	1269, 3140
Psp124BI	GAGCTC	3 cut(s)	210, 857, 2989
Psp1406I	AACGTT	1 cut(s)	2418
Psp5II	RGGWCCY	1 cut(s)	2701
Psp6I	CCWGG	6 cut(s)	311, 538, 568, 1222, 1823, 2031
PspGI	CCWGG	6 cut(s)	311, 538, 568, 1222, 1823, 2031
PspN4I	GGNNCC	9 cut(s)	310, 317, 921, 1922, 2169, 2471, 2702, 3163, 3386
PspPI	GGNCC	5 cut(s)	437, 1811, 2029, 2470, 2701
PspPPI	RGGWCCY	1 cut(s)	2701
PstNI	CAGNNNCTG	4 cut(s)	764, 1012, 1679, 2843
PsuI	RGATCY	4 cut(s)	919, 1804, 2512, 3055
PsyI	GACNNNGTC	1 cut(s)	1285
PvuII	CAGCTG	1 cut(s)	2240
RsaI	GTAC	4 cut(s)	833, 3080, 3341, 3386
RsaNI	GTAC	4 cut(s)	832, 3079, 3340, 3385
RseI	CAYNNNNRTG	4 cut(s)	34, 1038, 1236, 2573
SacI	GAGCTC	3 cut(s)	210, 857, 2989
SaqAI	TTAA	6 cut(s)	1304, 1484, 1539, 1647, 2361, 3015
Sau96I	GGNCC	5 cut(s)	437, 1811, 2029, 2470, 2701
SchI	GAGTC	4 cut(s)	363, 1295, 2075, 2981
ScrFI	CCNGG	7 cut(s)	313, 469, 540, 570, 1224, 1825, 2033
SfcI	CTRYAG	2 cut(s)	1995, 2622
SinI	GGWCC	4 cut(s)	437, 1811, 2029, 2701
SmiMI	CAYNNNNRTG	4 cut(s)	34, 1038, 1236, 2573
SmlI	CTYRAG	6 cut(s)	203, 2043, 2159, 2676, 2936, 3491
SmoI	CTYRAG	6 cut(s)	203, 2043, 2159, 2676, 2936, 3491
SnaBI	TACGTA	2 cut(s)	871, 1208
SspI	AATATT	3 cut(s)	1155, 1380, 2899
SspMI	CTAG	5 cut(s)	387, 1838, 2102, 2454, 3537
SstI	GAGCTC	3 cut(s)	210, 857, 2989
StyD4I	CCNGG	7 cut(s)	311, 467, 538, 568, 1222, 1823, 2031
TaaI	ACNGT	6 cut(s)	346, 382, 746, 1477, 2494, 3083
TaiI	ACGT	5 cut(s)	873, 894, 1210, 2421, 3160
TaqI	TCGA	4 cut(s)	195, 806, 914, 2823
TatI	WGTACW	1 cut(s)	831
TauI	GCSGC	3 cut(s)	71, 455, 1787
Tru1I	TTAA	6 cut(s)	1304, 1484, 1539, 1647, 2361, 3015
Tru9I	TTAA	6 cut(s)	1304, 1484, 1539, 1647, 2361, 3015
TspGWI	ACGGA	3 cut(s)	265, 450, 695
Tth111I	GACNNNGTC	1 cut(s)	1285
Van91I	CCANNNNNTGG	4 cut(s)	1580, 1663, 2816, 3200
VneI	GTGCAC	1 cut(s)	1707
VpaK11BI	GGWCC	4 cut(s)	437, 1811, 2029, 2701
XapI	RAATTY	7 cut(s)	224, 1329, 1395, 1852, 1862, 1985, 2447
XceI	RCATGY	3 cut(s)	2916, 3038, 3340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3471
XmnI	GAANNNNTTC	1 cut(s)	1495
XspI	CTAG	5 cut(s)	387, 1838, 2102, 2454, 3537
Zsp2I	ATGCAT	4 cut(s)	340, 995, 3295, 3306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.