AT1G47710

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17557091 .. 17560331
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47710.1

Sequence Viewer

Length: 1176 bp
ATGGACGTGCGTGAATCAATCTCACTGCAAAACCAAGTCTCCATGAATCTCGCAAAACACGTAATCACCACCGTCTCTCAAAACTCCAACGTCATCTTCTCACCGGCTTCAATCAACGTCGTACTCAGTATAATCGCCGCTGGATCCGCCGGCGCTACCAAAGATCAGATCCTCTCGTTTCTCAAATTCTCTTCCACTGATCAACTTAATTCATTCTCTTCCGAAATCGTCTCCGCTGTTCTCGCTGACGGTAGTGCTAACGGTGGTCCTAAGCTCTCGGTGGCTAATGGCGCCTGGATCGATAAGTCTCTCTCCTTTAAACCTTCCTTTAAACAGCTCTTGGAAGATTCGTATAAAGCTGCTTCGAATCAAGCTGATTTTCAATCGAAGGCTGTGGAGGTGATTGCTGAAGTGAATTCATGGGCTGAAAAGGAGACAAATGGTCTCATCACTGAGGTTCTTCCAGAAGGATCAGCTGATAGTATGACCAAACTGATATTTGCAAATGCATTGTACTTCAAGGGAACATGGAACGAGAAATTCGATGAGTCGTTAACACAAGAAGGCGAGTTTCACCTTCTTGACGGTAACAAAGTGACTGCACCATTCATGACCAGCAAGAAGAAACAATACGTAAGTGCTTACGATGGTTTCAAAGTTTTGGGACTTCCTTACTTACAAGGACAGGATAAGCGACAATTCTCCATGTACTTTTATCTTCCCGATGCAAACAACGGACTGTCTGATCTTCTGGACAAAATAGTTTCCACTCCTGGGTTCTTAGACAACCACATCCCACGCAGACAAGTTAAAGTCCGCGAATTCAAGATTCCAAAGTTTAAATTCTCTTTCGGGTTCGATGCTTCAAATGTTTTAAAAGGATTGGGACTGACTTCGCCTTTCAGCGGTGAAGAAGGTTTAACTGAGATGGTTGAATCTCCTGAGATGGGGAAGAATCTATGCGTATCGAACATTTTCCATAAAGCGTGTATCGAAGTGAATGAAGAAGGAACAGAAGCTGCAGCTGCATCAGCTGGAGTTATAAAGCTAAGAGGATTGCTTATGGAGGAAGATGAAATAGATTTTGTTGCAGACCATCCGTTTCTATTGGTGGTCACAGAGAACATAACAGGAGTGGTTCTGTTCATTGGCCAAGTTGTTGATCCGTTGCATTAA

Protein Analysis

391

Amino Acids

42.64

Weight (kDa)

4.97

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 10 - 389 1.1e-100 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1043
AccB1I GGYRCC 1 cut(s) 290
AccII CGCG 1 cut(s) 819
AciI CCGC 5 cut(s) 138, 147, 234, 817, 906
AclWI GGATC 6 cut(s) 138, 151, 163, 305, 478, 1157
AcoI YGGCCR 1 cut(s) 1150
AcsI RAATTY 5 cut(s) 185, 415, 539, 821, 842
AcuI CTGAAG 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 3 cut(s) 123, 515, 710
AfiI CCNNNNNNNGG 3 cut(s) 774, 905, 947
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 7 cut(s) 111, 383, 520, 655, 826, 867, 935
AhdI GACNNNNNGTC 1 cut(s) 441
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 2 cut(s) 293, 772
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 9 cut(s) 274, 337, 359, 374, 476, 1019, 1025, 1034, 1048
AluI AGCT 9 cut(s) 274, 337, 359, 374, 476, 1019, 1025, 1034, 1048
Alw26I GTCTC 6 cut(s) 43, 79, 235, 312, 428, 449
AlwI GGATC 6 cut(s) 138, 151, 163, 305, 478, 1157
AlwNI CAGNNNCTG 1 cut(s) 1019
AoxI GGCC 1 cut(s) 1150
ApeKI GCWGC 4 cut(s) 359, 1019, 1022, 1025
ApoI RAATTY 5 cut(s) 185, 415, 539, 821, 842
Asp700I GAANNNNTTC 1 cut(s) 974
AspLEI GCGC 2 cut(s) 155, 293
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 5 cut(s) 58, 93, 412, 566, 920
AsuII TTCGAA 1 cut(s) 365
AvaII GGWCC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 1152
BamHI GGATCC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 614, 646
BbvI GCAGC 4 cut(s) 346, 1006, 1012, 1034
BccI CCATC 4 cut(s) 641, 922, 940, 1104
BciT130I CCWGG 2 cut(s) 295, 774
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 6 cut(s) 43, 79, 235, 312, 428, 449
BfmI CTRYAG 1 cut(s) 1020
BfoI RGCGCY 2 cut(s) 156, 294
BisI GCNGC 5 cut(s) 138, 360, 1020, 1023, 1026
BlsI GCNGC 5 cut(s) 139, 361, 1021, 1024, 1027
Bme1390I CCNGG 2 cut(s) 295, 774
Bme18I GGWCC 1 cut(s) 266
BmeRI GACNNNNNGTC 1 cut(s) 441
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 2 cut(s) 145, 292
BmrFI CCNGG 2 cut(s) 295, 774
BmsI GCATC 3 cut(s) 715, 850, 1037
BpmI CTGGAG 1 cut(s) 1056
Bpu10I CCTNAGC 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 365
Bsa29I ATCGAT 1 cut(s) 300
BsaAI YACGTR 2 cut(s) 61, 634
BsaHI GRCGYC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 773
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 3 cut(s) 774, 905, 947
Bse118I RCCGGY 2 cut(s) 103, 149
BseBI CCWGG 2 cut(s) 295, 774
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 773
BseGI GGATG 2 cut(s) 792, 1096
BseLI CCNNNNNNNGG 3 cut(s) 774, 905, 947
BseMII CTCAG 4 cut(s) 139, 444, 915, 933
BseXI GCAGC 4 cut(s) 346, 1006, 1012, 1034
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 1 cut(s) 819
BshFI GGCC 1 cut(s) 1152
BshNI GGYRCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 300
BsiSI CCGG 2 cut(s) 104, 150
BslFI GGGAC 2 cut(s) 678, 900
BslI CCNNNNNNNGG 3 cut(s) 774, 905, 947
BsmAI GTCTC 6 cut(s) 43, 79, 235, 312, 428, 449
BsmBI CGTCTC 2 cut(s) 79, 235
BsmFI GGGAC 2 cut(s) 678, 900
BsnI GGCC 1 cut(s) 1152
Bso31I GGTCTC 1 cut(s) 449
Bsp119I TTCGAA 1 cut(s) 365
Bsp143I GATC 8 cut(s) 143, 163, 168, 199, 297, 470, 745, 1162
BspACI CCGC 5 cut(s) 138, 147, 234, 817, 906
BspANI GGCC 1 cut(s) 1152
BspCNI CTCAG 4 cut(s) 138, 445, 916, 934
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 1 cut(s) 819
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 2 cut(s) 145, 292
BspMAI CTGCAG 1 cut(s) 1024
BspPI GGATC 6 cut(s) 138, 151, 163, 305, 478, 1157
BspT104I TTCGAA 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 449
BsrFI RCCGGY 2 cut(s) 103, 149
BssAI RCCGGY 2 cut(s) 103, 149
BssECI CCNNGG 1 cut(s) 773
BssMI GATC 8 cut(s) 143, 163, 168, 199, 297, 470, 745, 1162
BssNI GRCGYC 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 295, 774
Bst4CI ACNGT 5 cut(s) 73, 251, 263, 587, 741
Bst6I CTCTTC 2 cut(s) 196, 223
BstACI GRCGYC 1 cut(s) 291
BstBAI YACGTR 2 cut(s) 61, 634
BstBI TTCGAA 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 7 cut(s) 125, 270, 453, 781, 924, 942, 1049
BstF5I GGATG 2 cut(s) 792, 1096
BstFNI CGCG 1 cut(s) 819
BstH2I RGCGCY 2 cut(s) 156, 294
BstHHI GCGC 2 cut(s) 155, 293
BstKTI GATC 8 cut(s) 146, 166, 171, 202, 300, 473, 748, 1165
BstMAI GTCTC 6 cut(s) 43, 79, 235, 312, 428, 449
BstMBI GATC 8 cut(s) 143, 163, 168, 199, 297, 470, 745, 1162
BstMWI GCNNNNNNNGC 5 cut(s) 146, 242, 290, 1025, 1031
BstNI CCWGG 2 cut(s) 295, 774
BstSCI CCNGG 2 cut(s) 293, 772
BstSFI CTRYAG 1 cut(s) 1020
BstSNI TACGTA 1 cut(s) 634
BstUI CGCG 1 cut(s) 819
BstV1I GCAGC 4 cut(s) 346, 1006, 1012, 1034
BstX2I RGATCY 2 cut(s) 143, 168
BstYI RGATCY 2 cut(s) 143, 168
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 1 cut(s) 1152
BsuTUI ATCGAT 1 cut(s) 300
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 792, 1096
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 3 cut(s) 23, 195, 450
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 1019
CciI TCATGA 1 cut(s) 609
CfoI GCGC 2 cut(s) 155, 293
Cfr10I RCCGGY 2 cut(s) 103, 149
Cfr13I GGNCC 1 cut(s) 266
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 3 cut(s) 122, 514, 709
CviAII CATG 5 cut(s) 43, 420, 528, 610, 706
CviQI GTAC 3 cut(s) 122, 514, 709
DdeI CTNAG 7 cut(s) 125, 270, 453, 781, 924, 942, 1049
DinI GGCGCC 1 cut(s) 292
DpnI GATC 8 cut(s) 145, 165, 170, 201, 299, 472, 747, 1164
DpnII GATC 8 cut(s) 143, 163, 168, 199, 297, 470, 745, 1162
DraI TTTAAA 4 cut(s) 319, 331, 841, 876
DriI GACNNNNNGTC 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 1150
Eam1104I CTCTTC 2 cut(s) 196, 223
Eam1105I GACNNNNNGTC 1 cut(s) 441
EarI CTCTTC 2 cut(s) 196, 223
EciI GGCGGA 1 cut(s) 136
Eco105I TACGTA 1 cut(s) 634
Eco31I GGTCTC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 429
EcoRI GAATTC 2 cut(s) 415, 821
EcoRII CCWGG 2 cut(s) 293, 772
EcoT22I ATGCAT 1 cut(s) 511
EgeI GGCGCC 1 cut(s) 292
EheI GGCGCC 1 cut(s) 292
Esp3I CGTCTC 2 cut(s) 79, 235
FaeI CATG 5 cut(s) 46, 423, 531, 613, 709
FaqI GGGAC 2 cut(s) 678, 900
FatI CATG 5 cut(s) 42, 419, 527, 609, 705
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 5 cut(s) 138, 360, 1020, 1023, 1026
FokI GGATG 2 cut(s) 779, 1083
Fsp4HI GCNGC 5 cut(s) 138, 360, 1020, 1023, 1026
GlaI GCGC 2 cut(s) 154, 292
GluI GCNGC 5 cut(s) 138, 360, 1020, 1023, 1026
GsuI CTGGAG 1 cut(s) 1056
HaeII RGCGCY 2 cut(s) 156, 294
HaeIII GGCC 1 cut(s) 1152
HapII CCGG 2 cut(s) 104, 150
HhaI GCGC 2 cut(s) 155, 293
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 5 cut(s) 46, 423, 531, 613, 709
Hin6I GCGC 2 cut(s) 153, 291
HinP1I GCGC 2 cut(s) 153, 291
HincII GTYRAC 1 cut(s) 555
HindII GTYRAC 1 cut(s) 555
HinfI GANTC 8 cut(s) 14, 46, 347, 367, 548, 829, 935, 955
HpaI GTTAAC 1 cut(s) 555
HpaII CCGG 2 cut(s) 104, 150
HphI GGTGA 5 cut(s) 58, 93, 412, 566, 920
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 3 cut(s) 168, 223, 745
Hpy188III TCNNGA 7 cut(s) 464, 581, 610, 722, 752, 826, 941
Hpy8I GTNNAC 1 cut(s) 555
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 7 cut(s) 333, 382, 461, 557, 587, 908, 1001
HpyCH4III ACNGT 5 cut(s) 73, 251, 263, 587, 741
HpyCH4IV ACGT 5 cut(s) 6, 60, 90, 117, 633
HpyCH4V TGCA 9 cut(s) 28, 503, 509, 602, 728, 1022, 1028, 1091, 1171
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 242, 290, 1025, 1031
HpyF3I CTNAG 7 cut(s) 125, 270, 453, 781, 924, 942, 1049
HpySE526I ACGT 5 cut(s) 6, 60, 90, 117, 633
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 5 cut(s) 46, 423, 531, 613, 709
HspAI GCGC 2 cut(s) 153, 291
KasI GGCGCC 1 cut(s) 290
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 555
Kzo9I GATC 8 cut(s) 143, 163, 168, 199, 297, 470, 745, 1162
Lsp1109I GCAGC 4 cut(s) 346, 1006, 1012, 1034
LweI GCATC 3 cut(s) 715, 850, 1037
MaeII ACGT 5 cut(s) 6, 60, 90, 117, 633
MaeIII GTNAC 3 cut(s) 587, 595, 1114
MalI GATC 8 cut(s) 145, 165, 170, 201, 299, 472, 747, 1164
MboI GATC 8 cut(s) 143, 163, 168, 199, 297, 470, 745, 1162
MflI RGATCY 2 cut(s) 143, 168
MlsI TGGCCA 1 cut(s) 1152
MluCI AATT 7 cut(s) 185, 208, 415, 539, 698, 821, 842
MluNI TGGCCA 1 cut(s) 1152
Mly113I GGCGCC 1 cut(s) 291
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 5 cut(s) 182, 391, 448, 1046, 1060
Mox20I TGGCCA 1 cut(s) 1152
Mph1103I ATGCAT 1 cut(s) 511
MreI CGCCGGCG 1 cut(s) 149
MroNI GCCGGC 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 974
MscI TGGCCA 1 cut(s) 1152
MseI TTAA 9 cut(s) 207, 318, 330, 554, 810, 840, 875, 920, 1174
Msp20I TGGCCA 1 cut(s) 1152
MspA1I CMGCKG 6 cut(s) 140, 236, 476, 906, 1025, 1034
MspI CCGG 2 cut(s) 104, 150
MspR9I CCNGG 2 cut(s) 295, 774
MvaI CCWGG 2 cut(s) 295, 774
MvnI CGCG 1 cut(s) 819
MwoI GCNNNNNNNGC 5 cut(s) 146, 242, 290, 1025, 1031
NaeI GCCGGC 1 cut(s) 151
NarI GGCGCC 1 cut(s) 291
NdeII GATC 8 cut(s) 143, 163, 168, 199, 297, 470, 745, 1162
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 5 cut(s) 46, 423, 531, 613, 709
NlaIV GGNNCC 2 cut(s) 145, 292
NmuCI GTSAC 2 cut(s) 595, 1114
NsiI ATGCAT 1 cut(s) 511
NspV TTCGAA 1 cut(s) 365
PagI TCATGA 1 cut(s) 609
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 540
PdiI GCCGGC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 974
PfeI GAWTC 7 cut(s) 14, 46, 347, 367, 829, 935, 955
PkrI GCNGC 5 cut(s) 139, 361, 1021, 1024, 1027
PleI GAGTC 1 cut(s) 556
PluTI GGCGCC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 2 cut(s) 61, 634
PsiI TTATAA 1 cut(s) 1043
Psp6I CCWGG 2 cut(s) 293, 772
PspGI CCWGG 2 cut(s) 293, 772
PspN4I GGNNCC 2 cut(s) 145, 292
PspPI GGNCC 1 cut(s) 266
PstI CTGCAG 1 cut(s) 1024
PstNI CAGNNNCTG 1 cut(s) 1019
PsuI RGATCY 2 cut(s) 143, 168
PvuII CAGCTG 3 cut(s) 476, 1025, 1034
RsaI GTAC 3 cut(s) 123, 515, 710
RsaNI GTAC 3 cut(s) 122, 514, 709
SaqAI TTAA 9 cut(s) 207, 318, 330, 554, 810, 840, 875, 920, 1174
SatI GCNGC 5 cut(s) 138, 360, 1020, 1023, 1026
Sau3AI GATC 8 cut(s) 143, 163, 168, 199, 297, 470, 745, 1162
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 2 cut(s) 295, 774
SfaNI GCATC 3 cut(s) 715, 850, 1037
SfcI CTRYAG 1 cut(s) 1020
SfoI GGCGCC 1 cut(s) 292
SfuI TTCGAA 1 cut(s) 365
SgrAI CRCCGGYG 1 cut(s) 149
SinI GGWCC 1 cut(s) 266
SnaBI TACGTA 1 cut(s) 634
Sse9I AATT 7 cut(s) 185, 208, 415, 539, 698, 821, 842
SsiI CCGC 5 cut(s) 138, 147, 234, 817, 906
SspDI GGCGCC 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 293, 772
TaaI ACNGT 5 cut(s) 73, 251, 263, 587, 741
TaiI ACGT 5 cut(s) 9, 63, 93, 120, 636
TaqI TCGA 7 cut(s) 300, 365, 386, 543, 858, 968, 993
TasI AATT 7 cut(s) 185, 208, 415, 539, 698, 821, 842
TatI WGTACW 2 cut(s) 513, 708
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 7 cut(s) 14, 46, 347, 367, 829, 935, 955
Tru1I TTAA 9 cut(s) 207, 318, 330, 554, 810, 840, 875, 920, 1174
Tru9I TTAA 9 cut(s) 207, 318, 330, 554, 810, 840, 875, 920, 1174
TscAI CASTG 3 cut(s) 30, 202, 457
TseFI GTSAC 2 cut(s) 595, 1114
TseI GCWGC 4 cut(s) 359, 1019, 1022, 1025
Tsp45I GTSAC 2 cut(s) 595, 1114
TspDTI ATGAA 7 cut(s) 59, 201, 408, 598, 1017, 1089, 1135
TspGWI ACGGA 3 cut(s) 750, 1089, 1155
TspRI CASTG 3 cut(s) 30, 202, 457
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 5 cut(s) 185, 415, 539, 821, 842
XmnI GAANNNNTTC 1 cut(s) 974
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.