Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002697

Physical Location & Seq

Genomic Coordinates Forward (+)

23471343 .. 23471705

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTTTTGGTTTTGTTTTGAAGGCTGTACAAGTGCGTCAAGAGCTGAATAAGTGGGCTTCCGATCACACCAATGGTCTCATCATAGACCTTCTTCCTCGTGGATCCGTTAAAAGCGAAACCGTTCAGGTTTATGGAAACGCATTGTACTTCAAAGGAGCATGGGAAAACAAATTTGACAAGTCTTCAACCAAAGACAACGAGTTTCACCAAGGCAAAGAAGTACATGTGCCTTTCATGAGAAGCTATGAAAGTCAATATATAATGGCTTGCGATGGTTTCAAGGTCCTTGGACTACCATACCAACAAGGCCTTGATGATACCAAACGAAAATTCTCAATCTATTTCTATCTTCCCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034641 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046483 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0098772 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko05146 map00190 map01100 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

120

Amino Acids

13.9

Weight (kDa)

7.82

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	11 - 120	5.2e-26	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47710 AT1G47710 AT1G51330 AT1G62160 AT1G62170 AT1G62170 AT1G63280 AT1G64010 AT1G64010 AT1G64030 AT2G14540 AT2G25240 AT2G26390 AT2G35580 AT3G45220
fragaria_vesca	FvH4_2g40700
malus_domestica	MD08G1040600.v1.1 MD08G1041200.v1.1 MD08G1041300.v1.1 MD08G1041500.v1.1 MD08G1041600.v1.1 MD14G1097300.v1.1 MD15G1035000.v1.1 MD15G1286900.v1.1
prunus_persica	Prupe.1G389200_v2.0.a1 Prupe.1G389300_v2.0.a1 Prupe.3G141200_v2.0.a1
pyrus_communis	pycom08g03320 pycom08g03330 pycom08g03340 pycom08g03360 pycom15g03220
rosa_chinensis	RchiOBHm_Chr6g0299901
rosa_laevigata	RLG00000011377
rosa_multiflora	Rmu_ssc0000158.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168290
rosa_rugosa	Rorug06G0293100
rosa_samantha	Rh4AG219100
rosa_wichuraiana	Rw6G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	99, 112
AcsI	RAATTY	2 cut(s)	173, 332
AfaI	GTAC	3 cut(s)	30, 149, 225
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	4 cut(s)	22, 154, 189, 283
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	2 cut(s)	46, 246
AluI	AGCT	2 cut(s)	46, 246
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	99, 112
AoxI	GGCC	1 cut(s)	310
ApoI	RAATTY	2 cut(s)	173, 332
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	286
BamHI	GGATCC	1 cut(s)	104
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	177
BccI	CCATC	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	211, 289
BseDI	CCNNGG	2 cut(s)	211, 289
BshFI	GGCC	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	64, 104
BspANI	GGCC	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	2 cut(s)	99, 112
BspTNI	GGTCTC	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	211, 289
BssMI	GATC	2 cut(s)	64, 104
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	2 cut(s)	211, 289
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	67, 107
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	64, 104
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	271
CciI	TCATGA	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	29, 148, 224
CviAII	CATG	3 cut(s)	162, 227, 238
CviJI	RGCY	6 cut(s)	26, 46, 59, 246, 269, 312
CviKI_1	RGCY	6 cut(s)	26, 46, 59, 246, 269, 312
CviQI	GTAC	3 cut(s)	29, 148, 224
DpnI	GATC	2 cut(s)	66, 106
DpnII	GATC	2 cut(s)	64, 104
Eco130I	CCWWGG	2 cut(s)	211, 289
Eco147I	AGGCCT	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	286
EcoT14I	CCWWGG	2 cut(s)	211, 289
ErhI	CCWWGG	2 cut(s)	211, 289
FaeI	CATG	3 cut(s)	165, 230, 241
FaiI	YATR	9 cut(s)	86, 135, 163, 228, 239, 249, 261, 263, 301
FatI	CATG	3 cut(s)	161, 226, 237
FspBI	CTAG	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	312
HgaI	GACGC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	165, 230, 241
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	3 cut(s)	41, 238, 356
HpyAV	CCTTC	2 cut(s)	16, 101
HpyCH4III	ACNGT	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
Hsp92II	CATG	3 cut(s)	165, 230, 241
Kzo9I	GATC	2 cut(s)	64, 104
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	1 cut(s)	113
MaeI	CTAG	1 cut(s)	361
MalI	GATC	2 cut(s)	66, 106
MboI	GATC	2 cut(s)	64, 104
MboII	GAAGA	3 cut(s)	86, 177, 344
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	2 cut(s)	173, 332
MnlI	CCTC	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	2 cut(s)	64, 104
NlaIII	CATG	3 cut(s)	165, 230, 241
NlaIV	GGNNCC	1 cut(s)	106
NspI	RCATGY	1 cut(s)	230
PagI	TCATGA	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	312
PciI	ACATGT	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	286
PscI	ACATGT	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	286
PspPPI	RGGWCCY	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	3 cut(s)	30, 149, 225
RsaNI	GTAC	3 cut(s)	29, 148, 224
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	64, 104
Sau96I	GGNCC	1 cut(s)	286
SetI	ASST	5 cut(s)	48, 93, 132, 248, 288
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	173, 332
SseBI	AGGCCT	1 cut(s)	312
SspMI	CTAG	1 cut(s)	361
StuI	AGGCCT	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	211, 289
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	2 cut(s)	173, 332
TatI	WGTACW	3 cut(s)	28, 147, 223
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	226, 264
TspGWI	ACGGA	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	2 cut(s)	173, 332
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.