Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002697

Physical Location & Seq

Genomic Coordinates Forward (+)

22972352 .. 22973303

Gene Structure 952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTTGCTGCTAGTTCCGGTGATGAACAAGATGATGAACTAAGATTCTTCATCCTCTCCTTCCTCAAGGCTTCCTCAACCGATGAACTCAACGCTGTTCTCCGCAAAATCGCTTCCAGTGTCTTCGTTGACGGAAGCAAAAAAGGCGGCCCTAAAATGCGTGGGCATAAGAACTTTGAGAAACAATACATTGCGGCTTATGATGGTTTTAAGGTACTCAGACTTCCTTATCGACAAGGCCGTGACAATACCAACCGCAACTTCTCAATGTATTTCTATCTACCGGACAAGAAAGGTGAATTGGATGATCTTTTAAAGAGAATGACATCTACTCCTGGATTCTTGGATAGTCACACTCCGAGAGAAAGAGTTGAAGTCGATGAATTCAGAATTCCAAAGTTTAAGATCGAATTTGGGTTTGAAGCTTCAAGTGTTTTCAGTGACTTTGAGATTGATGTGTCATTTTACCAAAAAGCTTTGATTGAGATCGATGAAGAAGGTACTGAAGCTGCTGCTGCAACTGCTTTTGTTGACAACGAAGATGGCTGCGGTTTTGTGGAGACGTTAGATTTCGTGGCAGATCATCCATTTCTTTTCTTGATTAGAGAAGAACAAACCGGAACTGTTTTGTTTGCTGGTCAAATCTTTGATCCTTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034641 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046483 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0098772 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko05146 map00190 map01100 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

220

Amino Acids

24.89

Weight (kDa)

4.72

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	47 - 218	7.2e-29	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47710 AT1G47710 AT1G51330 AT1G62160 AT1G62170 AT1G62170 AT1G63280 AT1G64010 AT1G64010 AT1G64030 AT2G14540 AT2G25240 AT2G26390 AT2G35580 AT3G45220
fragaria_vesca	FvH4_2g40700
malus_domestica	MD08G1040600.v1.1 MD08G1041200.v1.1 MD08G1041300.v1.1 MD08G1041500.v1.1 MD08G1041600.v1.1 MD14G1097300.v1.1 MD15G1035000.v1.1 MD15G1286900.v1.1
prunus_persica	Prupe.1G389200_v2.0.a1 Prupe.1G389300_v2.0.a1 Prupe.3G141200_v2.0.a1
pyrus_communis	pycom08g03320 pycom08g03330 pycom08g03340 pycom08g03360 pycom15g03220
rosa_chinensis	RchiOBHm_Chr6g0299901
rosa_laevigata	RLG00000011377
rosa_multiflora	Rmu_ssc0000158.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168290
rosa_rugosa	Rorug06G0293100
rosa_samantha	Rh4AG219100
rosa_wichuraiana	Rw6G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	103, 147, 194, 256, 549
AclWI	GGATC	1 cut(s)	644
AcsI	RAATTY	3 cut(s)	383, 390, 410
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	2 cut(s)	216, 502
AgsI	TTSAA	3 cut(s)	374, 422, 429
AjnI	CCWGG	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	4 cut(s)	245, 277, 284, 316
AluBI	AGCT	3 cut(s)	425, 476, 509
AluI	AGCT	3 cut(s)	425, 476, 509
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	644
AoxI	GGCC	2 cut(s)	148, 238
ApeKI	GCWGC	5 cut(s)	8, 509, 512, 515, 546
ApoI	RAATTY	3 cut(s)	383, 390, 410
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	32, 308
BarI	GAAGNNNNNNTAC	2 cut(s)	207, 239
BbsI	GAAGAC	1 cut(s)	115
BbvI	GCAGC	4 cut(s)	496, 499, 502, 533
BccI	CCATC	2 cut(s)	197, 536
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	7 cut(s)	9, 148, 195, 510, 513, 516, 547
BlsI	GCNGC	7 cut(s)	10, 149, 196, 511, 514, 517, 548
Bme1390I	CCNGG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	50
Bsa29I	ATCGAT	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	485
BsaWI	WCCGGW	3 cut(s)	17, 283, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	489
BseGI	GGATG	3 cut(s)	51, 310, 583
BseJI	GATNNNNATC	1 cut(s)	485
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	117
BseXI	GCAGC	4 cut(s)	496, 499, 502, 533
BshFI	GGCC	2 cut(s)	150, 240
BshVI	ATCGAT	1 cut(s)	489
BsiSI	CCGG	3 cut(s)	18, 284, 618
BsmAI	GTCTC	1 cut(s)	554
BsmBI	CGTCTC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	150, 240
Bsp143I	GATC	5 cut(s)	307, 405, 486, 580, 649
BspACI	CCGC	5 cut(s)	103, 147, 194, 256, 549
BspANI	GGCC	2 cut(s)	150, 240
BspCNI	CTCAG	1 cut(s)	231
BspDI	ATCGAT	1 cut(s)	489
BspPI	GGATC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	117
BssMI	GATC	5 cut(s)	307, 405, 486, 580, 649
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	625
BstDEI	CTNAG	3 cut(s)	41, 218, 660
BstF5I	GGATG	3 cut(s)	51, 310, 583
BstKTI	GATC	5 cut(s)	310, 408, 489, 583, 652
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	5 cut(s)	307, 405, 486, 580, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 515, 521
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstV1I	GCAGC	4 cut(s)	496, 499, 502, 533
BstV2I	GAAGAC	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	150, 240
BsuTUI	ATCGAT	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	51, 310, 583
BtsIMutI	CAGTG	2 cut(s)	124, 445
Cfr13I	GGNCC	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	215, 501
CviJI	RGCY	8 cut(s)	71, 150, 197, 240, 425, 476, 509, 546
CviKI_1	RGCY	8 cut(s)	71, 150, 197, 240, 425, 476, 509, 546
CviQI	GTAC	2 cut(s)	215, 501
DdeI	CTNAG	3 cut(s)	41, 218, 660
DpnI	GATC	5 cut(s)	309, 407, 488, 582, 651
DpnII	GATC	5 cut(s)	307, 405, 486, 580, 649
DraI	TTTAAA	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	525
EcoRI	GAATTC	2 cut(s)	383, 390
EcoRII	CCWGG	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	554
FaiI	YATR	2 cut(s)	168, 201
Fnu4HI	GCNGC	7 cut(s)	9, 148, 195, 510, 513, 516, 547
FokI	GGATG	3 cut(s)	38, 317, 570
Fsp4HI	GCNGC	7 cut(s)	9, 148, 195, 510, 513, 516, 547
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	7 cut(s)	9, 148, 195, 510, 513, 516, 547
HaeIII	GGCC	2 cut(s)	150, 240
HapII	CCGG	3 cut(s)	18, 284, 618
HincII	GTYRAC	2 cut(s)	130, 532
HindII	GTYRAC	2 cut(s)	130, 532
HindIII	AAGCTT	2 cut(s)	423, 474
HinfI	GANTC	2 cut(s)	45, 339
HpaII	CCGG	3 cut(s)	18, 284, 618
HphI	GGTGA	2 cut(s)	32, 308
Hpy166II	GTNNAC	2 cut(s)	130, 532
Hpy188I	TCNGA	3 cut(s)	221, 360, 389
Hpy188III	TCNNGA	1 cut(s)	598
Hpy8I	GTNNAC	2 cut(s)	130, 532
HpyAV	CCTTC	3 cut(s)	70, 491, 663
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 515, 521
HpyF3I	CTNAG	3 cut(s)	41, 218, 660
HpySE526I	ACGT	1 cut(s)	563
Kzo9I	GATC	5 cut(s)	307, 405, 486, 580, 649
LpnPI	CCDG	7 cut(s)	31, 130, 297, 321, 348, 621, 631
Lsp1109I	GCAGC	4 cut(s)	496, 499, 502, 533
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	3 cut(s)	242, 350, 440
MalI	GATC	5 cut(s)	309, 407, 488, 582, 651
MboI	GATC	5 cut(s)	307, 405, 486, 580, 649
MboII	GAAGA	5 cut(s)	40, 115, 506, 551, 620
MluCI	AATT	4 cut(s)	299, 383, 390, 410
MnlI	CCTC	3 cut(s)	65, 74, 85
MseI	TTAA	3 cut(s)	210, 314, 402
MspI	CCGG	3 cut(s)	18, 284, 618
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	144, 515, 521
NdeII	GATC	5 cut(s)	307, 405, 486, 580, 649
NmuCI	GTSAC	3 cut(s)	242, 350, 440
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	45, 339
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	7 cut(s)	10, 149, 196, 511, 514, 517, 548
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	216, 502
RsaNI	GTAC	2 cut(s)	215, 501
SaqAI	TTAA	3 cut(s)	210, 314, 402
SatI	GCNGC	7 cut(s)	9, 148, 195, 510, 513, 516, 547
Sau3AI	GATC	5 cut(s)	307, 405, 486, 580, 649
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	7 cut(s)	216, 298, 427, 478, 502, 511, 566
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	299, 383, 390, 410
SsiI	CCGC	5 cut(s)	103, 147, 194, 256, 549
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	4 cut(s)	232, 378, 408, 489
TasI	AATT	4 cut(s)	299, 383, 390, 410
TauI	GCSGC	2 cut(s)	150, 197
TfiI	GAWTC	2 cut(s)	45, 339
Tru1I	TTAA	3 cut(s)	210, 314, 402
Tru9I	TTAA	3 cut(s)	210, 314, 402
TscAI	CASTG	2 cut(s)	124, 445
TseFI	GTSAC	3 cut(s)	242, 350, 440
TseI	GCWGC	5 cut(s)	8, 509, 512, 515, 546
Tsp45I	GTSAC	3 cut(s)	242, 350, 440
TspDTI	ATGAA	6 cut(s)	39, 40, 51, 99, 396, 507
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	124, 445
XapI	RAATTY	3 cut(s)	383, 390, 410
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.