Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002697

Physical Location & Seq

Genomic Coordinates Forward (+)

2590181 .. 2590795

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g03330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGATGCCATCCATGACCAGCAGGAAGAAACAGTATGTAAGTTCCTTCAATGGTTTCTCAGTCTTAGGGCTTCATTACAAGCAAGGTGAAGACAAGCGGTGTTTCTCCATGCACATCTTTCTCCCCGAGGCGAAAGATGGGCTCCCAGCTTTGGTTGAGAAACTTGGTTCTGAGTCCGGGTTTTTGGATCGCCATCTTCCCAAGCAAAAATCTGCAGTGGGTGATTTCAGAATTCCAAAGTTTAAGATCTCATTTGGGTTTGAAGCTTCCAATGTCCTTAAAGGTCTGGGACTGGTGCTGCCTTTCGGTGGTGAAGGAGGTTTGAAAGAGATGGTGGACTCGCCCGAGGGTAAGAACTTGTCCGTTTCCAGCATATTCCATAAGTCGTTCATCGAAGTGAACGAAGAAGGCACAGAAGCTGCAGCTAAGACTGCCGGGGTTATTAGGCTTTTGCGGCTGGAAGTGCCAAGGACGGTTGACTTTGTGTCTGATCGATCCATTTCTCTTCTTGATCAAGGAAGAATTGACCGGAACTGTGCTTTTCATCGGGCACGTACTCAATCCTCTTGCAGGCTGAGCGTTGTTATTCCCTGTAAAAGGCAAATGTATACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

205

Amino Acids

22.65

Weight (kDa)

9.43

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	3 - 165	2.1e-26	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47710 AT1G47710 AT1G51330 AT1G62160 AT1G62170 AT1G62170 AT1G63280 AT1G64010 AT1G64010 AT1G64030 AT2G14540 AT2G25240 AT2G26390 AT2G35580 AT3G45220
fragaria_vesca	FvH4_2g40700
malus_domestica	MD08G1040600.v1.1 MD08G1041200.v1.1 MD08G1041300.v1.1 MD08G1041500.v1.1 MD08G1041600.v1.1 MD14G1097300.v1.1 MD15G1035000.v1.1 MD15G1286900.v1.1
prunus_persica	Prupe.1G389200_v2.0.a1 Prupe.1G389300_v2.0.a1 Prupe.3G141200_v2.0.a1
pyrus_communis	pycom08g03320 pycom08g03330 pycom08g03340 pycom08g03360 pycom15g03220
rosa_chinensis	RchiOBHm_Chr6g0299901
rosa_laevigata	RLG00000011377
rosa_multiflora	Rmu_ssc0000158.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168290
rosa_rugosa	Rorug06G0293100
rosa_samantha	Rh4AG219100
rosa_wichuraiana	Rw6G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	608
AciI	CCGC	2 cut(s)	97, 454
AclWI	GGATC	2 cut(s)	195, 489
AcsI	RAATTY	1 cut(s)	231
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	4 cut(s)	151, 308, 570, 597
AgsI	TTSAA	3 cut(s)	49, 263, 325
AhdI	GACNNNNNGTC	1 cut(s)	484
AluBI	AGCT	4 cut(s)	149, 266, 419, 425
AluI	AGCT	4 cut(s)	149, 266, 419, 425
AlwI	GGATC	2 cut(s)	195, 489
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	2 cut(s)	125, 344
ApeKI	GCWGC	3 cut(s)	298, 419, 422
ApoI	RAATTY	1 cut(s)	231
AsuC2I	CCSGG	2 cut(s)	178, 436
AsuHPI	GGTGA	3 cut(s)	98, 233, 323
AvaI	CYCGRG	2 cut(s)	125, 344
BaeGI	GKGCMC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	285, 406, 434
BccI	CCATC	4 cut(s)	16, 131, 201, 325
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	2 cut(s)	178, 436
BfmI	CTRYAG	2 cut(s)	213, 420
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	4 cut(s)	299, 420, 423, 455
BlpI	GCTNAGC	1 cut(s)	575
BlsI	GCNGC	4 cut(s)	300, 421, 424, 456
Bme1390I	CCNGG	2 cut(s)	178, 436
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmeT110I	CYCGRG	2 cut(s)	125, 344
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	2 cut(s)	178, 436
BpiI	GAAGAC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	575
BpuMI	CCSGG	2 cut(s)	178, 436
Bsa29I	ATCGAT	1 cut(s)	493
BsaAI	YACGTR	2 cut(s)	554, 612
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	4 cut(s)	126, 345, 435, 467
BsaWI	WCCGGW	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 308, 570, 597
Bse1I	ACTGG	1 cut(s)	297
Bse8I	GATNNNNATC	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	493
BseDI	CCNNGG	4 cut(s)	126, 345, 435, 467
BseGI	GGATG	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	4 cut(s)	151, 308, 570, 597
BseMII	CTCAG	3 cut(s)	72, 162, 566
BseNI	ACTGG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	3 cut(s)	285, 406, 434
BseYI	CCCAGC	1 cut(s)	145
BshVI	ATCGAT	1 cut(s)	493
BsiHKCI	CYCGRG	2 cut(s)	125, 344
BsiSI	CCGG	3 cut(s)	177, 435, 529
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	4 cut(s)	151, 308, 570, 597
BsmFI	GGGAC	1 cut(s)	303
BsoBI	CYCGRG	2 cut(s)	125, 344
Bsp1286I	GDGCHC	2 cut(s)	144, 553
Bsp143I	GATC	5 cut(s)	187, 246, 490, 494, 511
Bsp1720I	GCTNAGC	1 cut(s)	575
BspACI	CCGC	2 cut(s)	97, 454
BspCNI	CTCAG	3 cut(s)	71, 163, 567
BspDI	ATCGAT	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	143
BspMAI	CTGCAG	2 cut(s)	217, 424
BspPI	GGATC	2 cut(s)	195, 489
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	4 cut(s)	126, 345, 435, 467
BssMI	GATC	5 cut(s)	187, 246, 490, 494, 511
BssNAI	GTATAC	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	467
Bst1107I	GTATAC	1 cut(s)	609
Bst4CI	ACNGT	3 cut(s)	33, 475, 536
Bst6I	CTCTTC	1 cut(s)	510
BstBAI	YACGTR	2 cut(s)	554, 612
BstC8I	GCNNGC	1 cut(s)	572
BstDEI	CTNAG	5 cut(s)	58, 64, 171, 426, 575
BstENI	CCTNNNNNAGG	2 cut(s)	568, 595
BstF5I	GGATG	1 cut(s)	8
BstKTI	GATC	5 cut(s)	190, 249, 493, 497, 514
BstMBI	GATC	5 cut(s)	187, 246, 490, 494, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	431, 454, 463, 576
BstSCI	CCNGG	2 cut(s)	176, 434
BstSFI	CTRYAG	2 cut(s)	213, 420
BstSLI	GKGCMC	1 cut(s)	553
BstSNI	TACGTA	1 cut(s)	612
BstV1I	GCAGC	3 cut(s)	285, 406, 434
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BstZ17I	GTATAC	1 cut(s)	609
Bsu15I	ATCGAT	1 cut(s)	493
BsuTUI	ATCGAT	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	572
CaiI	CAGNNNCTG	1 cut(s)	419
ClaI	ATCGAT	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	555
CviAII	CATG	2 cut(s)	13, 109
CviJI	RGCY	9 cut(s)	70, 142, 149, 266, 419, 425, 448, 457, 574
CviKI_1	RGCY	9 cut(s)	70, 142, 149, 266, 419, 425, 448, 457, 574
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	5 cut(s)	58, 64, 171, 426, 575
DpnI	GATC	5 cut(s)	189, 248, 492, 496, 513
DpnII	GATC	5 cut(s)	187, 246, 490, 494, 511
DriI	GACNNNNNGTC	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	510
Eam1105I	GACNNNNNGTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	510
Eco105I	TACGTA	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	144
Eco88I	CYCGRG	2 cut(s)	125, 344
EcoNI	CCTNNNNNAGG	2 cut(s)	568, 595
EcoRI	GAATTC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	2 cut(s)	16, 112
FaiI	YATR	6 cut(s)	14, 36, 110, 374, 381, 609
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	2 cut(s)	12, 108
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	608
Fnu4HI	GCNGC	4 cut(s)	299, 420, 423, 455
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	4 cut(s)	299, 420, 423, 455
GluI	GCNGC	4 cut(s)	299, 420, 423, 455
GsaI	CCCAGC	1 cut(s)	149
HapII	CCGG	3 cut(s)	177, 435, 529
Hin1II	CATG	2 cut(s)	16, 112
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	2 cut(s)	173, 338
HpaII	CCGG	3 cut(s)	177, 435, 529
HphI	GGTGA	3 cut(s)	98, 233, 323
Hpy166II	GTNNAC	4 cut(s)	337, 400, 478, 609
Hpy188I	TCNGA	3 cut(s)	172, 230, 490
Hpy188III	TCNNGA	1 cut(s)	509
Hpy8I	GTNNAC	4 cut(s)	337, 400, 478, 609
HpyAV	CCTTC	3 cut(s)	55, 308, 401
HpyCH4III	ACNGT	3 cut(s)	33, 475, 536
HpyCH4IV	ACGT	2 cut(s)	553, 611
HpyCH4V	TGCA	4 cut(s)	112, 215, 422, 570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	431, 454, 463, 576
HpyF3I	CTNAG	5 cut(s)	58, 64, 171, 426, 575
HpySE526I	ACGT	2 cut(s)	553, 611
Hsp92II	CATG	2 cut(s)	16, 112
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	187, 246, 490, 494, 511
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	3 cut(s)	285, 406, 434
MaeII	ACGT	2 cut(s)	553, 611
MalI	GATC	5 cut(s)	189, 248, 492, 496, 513
MboI	GATC	5 cut(s)	187, 246, 490, 494, 511
MboII	GAAGA	6 cut(s)	37, 101, 188, 416, 497, 531
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	144, 553
MluCI	AATT	2 cut(s)	231, 522
MlyI	GAGTC	2 cut(s)	182, 332
MnlI	CCTC	4 cut(s)	121, 311, 340, 574
MseI	TTAA	2 cut(s)	243, 279
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	3 cut(s)	177, 435, 529
MspR9I	CCNGG	2 cut(s)	178, 436
MwoI	GCNNNNNNNGC	4 cut(s)	431, 454, 463, 576
NciI	CCSGG	2 cut(s)	178, 436
NdeII	GATC	5 cut(s)	187, 246, 490, 494, 511
NlaIII	CATG	2 cut(s)	16, 112
NlaIV	GGNNCC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PkrI	GCNGC	4 cut(s)	300, 421, 424, 456
PleI	GAGTC	2 cut(s)	181, 332
PpsI	GAGTC	2 cut(s)	181, 332
Ppu21I	YACGTR	2 cut(s)	554, 612
PspFI	CCCAGC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	143
PstI	CTGCAG	2 cut(s)	217, 424
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	243, 279
SatI	GCNGC	4 cut(s)	299, 420, 423, 455
Sau3AI	GATC	5 cut(s)	187, 246, 490, 494, 511
SchI	GAGTC	2 cut(s)	182, 332
ScrFI	CCNGG	2 cut(s)	178, 436
SduI	GDGCHC	2 cut(s)	144, 553
SetI	ASST	9 cut(s)	88, 151, 268, 286, 322, 421, 427, 556, 614
SfcI	CTRYAG	2 cut(s)	213, 420
SmiMI	CAYNNNNRTG	1 cut(s)	395
SnaBI	TACGTA	1 cut(s)	612
Sse9I	AATT	2 cut(s)	231, 522
SsiI	CCGC	2 cut(s)	97, 454
StyD4I	CCNGG	2 cut(s)	176, 434
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	3 cut(s)	33, 475, 536
TaiI	ACGT	2 cut(s)	556, 614
TaqI	TCGA	2 cut(s)	393, 493
TasI	AATT	2 cut(s)	231, 522
TauI	GCSGC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	243, 279
Tru9I	TTAA	2 cut(s)	243, 279
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	3 cut(s)	298, 419, 422
TspDTI	ATGAA	3 cut(s)	62, 379, 533
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	222
XagI	CCTNNNNNAGG	2 cut(s)	568, 595
XapI	RAATTY	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.