Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002697

Physical Location & Seq

Genomic Coordinates Forward (+)

14758397 .. 14759374

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1097300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGATCTGAGAGAAAACATCATCAACCAAAACGACTTCACTCTAGGGTTGACGAAGCAGCTGCTTCAGACCGAATGCAAGCAATCGAACGTCGTGTACTCGCCGCTGTCTATCCACGTGTTGTTGAGCCTGATCGCAACTGGGTCAAAGGGTCCAACTCAGAACCAGCTGCAGTCTTTTCTTAAGTCAAACTCCACCAACCACCTCAACTCCTTTGCCGCCGAGCTCGTCTCTGTGATCTTCTCCGATAGGTCCCCTAGCGGGGGCCCCCAGCTGTCGTTTGTGAGTGGTGGTTGGGTGGACAGGTGTCTCCATCTGAAGCCATATTTCAAGCAGACGAAAAGCCTTATCAAGGAGGTATTTCCGCCCAGATCAATTGACTGCTCAACCACACTCATCTTTGCAAACGCGTTATATTTCAAAAGAGCTTGGACTGAAAAGTTTAATGCATCACAAACGAAAGAGCATGACTTCCACCTTCTCGATGGGAGCATAGTTAAGGTGCCCTTCATGACCAGCAGGAAGAAACAGTATGTAAGATCCTTCAATGGTTTCTCCATGCACATCTTTCTTCGAGAGGGGAAAGATGGGCTGCCAGCTTTAGTTGAAAAACTTGGTTCTGAGTCTGGGTTTTTGGATCGCCATCTTCCCAAGCAAAAAATTGTAGTGGGTGATTTCAGGATTCCAAAGTTTAAGATTTCATTTGGGTTTAAAGCTTCAAATATCTTTAAAGGTCTGAGCTTGGTGCTACCATTCCGTGGTGGAGGAGGTTTGACAGAGATGGTGGACTCGCCTGAGGGAACAGGGGAAAAACATAGTGCTACGTCTGTCTCTGCGGGTTTCAAGCAGAGCAAAAAGTGTGGGAACAGATTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

293

Amino Acids

32.44

Weight (kDa)

9.74

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	9 - 112	1.4e-15	Serpin (serine protease inhibitor)
Serpin	PF00079	111 - 262	4.6e-21	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47710 AT1G47710 AT1G51330 AT1G62160 AT1G62170 AT1G62170 AT1G63280 AT1G64010 AT1G64010 AT1G64030 AT2G14540 AT2G25240 AT2G26390 AT2G35580 AT3G45220
fragaria_vesca	FvH4_2g40700
malus_domestica	MD08G1040600.v1.1 MD08G1041200.v1.1 MD08G1041300.v1.1 MD08G1041500.v1.1 MD08G1041600.v1.1 MD14G1097300.v1.1 MD15G1035000.v1.1 MD15G1286900.v1.1
prunus_persica	Prupe.1G389200_v2.0.a1 Prupe.1G389300_v2.0.a1 Prupe.3G141200_v2.0.a1
pyrus_communis	pycom08g03320 pycom08g03330 pycom08g03340 pycom08g03360 pycom15g03220
rosa_chinensis	RchiOBHm_Chr6g0299901
rosa_laevigata	RLG00000011377
rosa_multiflora	Rmu_ssc0000158.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168290
rosa_rugosa	Rorug06G0293100
rosa_samantha	Rh4AG219100
rosa_wichuraiana	Rw6G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	502
AccB7I	CCANNNNNTGG	1 cut(s)	758
AccII	CGCG	1 cut(s)	410
AciI	CCGC	5 cut(s)	104, 219, 261, 365, 836
AclWI	GGATC	3 cut(s)	12, 534, 645
AcuI	CTGAAG	2 cut(s)	50, 338
AcvI	CACGTG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	5 cut(s)	261, 262, 263, 352, 758
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	2 cut(s)	117, 408
AgsI	TTSAA	6 cut(s)	331, 421, 547, 608, 720, 844
AluBI	AGCT	8 cut(s)	61, 169, 226, 274, 428, 599, 716, 741
AluI	AGCT	8 cut(s)	61, 169, 226, 274, 428, 599, 716, 741
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	3 cut(s)	235, 314, 835
AlwI	GGATC	3 cut(s)	12, 534, 645
AoxI	GGCC	1 cut(s)	265
ApaI	GGGCCC	1 cut(s)	269
ApeKI	GCWGC	4 cut(s)	58, 61, 169, 592
AspS9I	GGNCC	4 cut(s)	152, 252, 265, 266
AsuHPI	GGTGA	1 cut(s)	683
AvaII	GGWCC	2 cut(s)	152, 252
AxyI	CCTNAGG	1 cut(s)	795
BaeGI	GKGCMC	2 cut(s)	269, 507
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	2 cut(s)	228, 269
BbrPI	CACGTG	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	4 cut(s)	48, 70, 156, 579
BccI	CCATC	5 cut(s)	321, 479, 581, 651, 775
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcoDI	GTCTC	3 cut(s)	235, 314, 835
BfaI	CTAG	2 cut(s)	44, 258
BfmI	CTRYAG	1 cut(s)	170
BfrI	CTTAAG	1 cut(s)	182
BisI	GCNGC	6 cut(s)	59, 62, 104, 170, 219, 593
BlsI	GCNGC	6 cut(s)	60, 63, 105, 171, 220, 594
Bme18I	GGWCC	2 cut(s)	152, 252
BmgT120I	GGNCC	4 cut(s)	152, 252, 265, 266
BmiI	GGNNCC	6 cut(s)	153, 254, 266, 267, 268, 504
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	458
BmuI	ACTGGG	1 cut(s)	150
BoxI	GACNNNNGTC	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BsaAI	YACGTR	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	757
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	5 cut(s)	261, 262, 263, 352, 758
Bse1I	ACTGG	1 cut(s)	145
Bse21I	CCTNAGG	1 cut(s)	795
Bse8I	GATNNNNATC	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	757
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	5 cut(s)	261, 262, 263, 352, 758
BseMII	CTCAG	4 cut(s)	173, 612, 728, 786
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	780
BseSI	GKGCMC	2 cut(s)	269, 507
BseXI	GCAGC	4 cut(s)	48, 70, 156, 579
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	502
BsiHKAI	GWGCWC	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	5 cut(s)	261, 262, 263, 352, 758
BsmAI	GTCTC	3 cut(s)	235, 314, 835
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	267
Bsp120I	GGGCCC	1 cut(s)	265
Bsp1286I	GDGCHC	3 cut(s)	228, 269, 507
Bsp143I	GATC	6 cut(s)	4, 132, 237, 371, 539, 637
BspACI	CCGC	5 cut(s)	104, 219, 261, 365, 836
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	4 cut(s)	172, 613, 729, 787
BspFNI	CGCG	1 cut(s)	410
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	6 cut(s)	153, 254, 266, 267, 268, 504
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	3 cut(s)	12, 534, 645
BspT107I	GGYRCC	1 cut(s)	502
BspTI	CTTAAG	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	757
BssMI	GATC	6 cut(s)	4, 132, 237, 371, 539, 637
Bst4CI	ACNGT	1 cut(s)	531
BstAFI	CTTAAG	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	80, 597
BstDEI	CTNAG	5 cut(s)	8, 159, 621, 737, 795
BstDSI	CCRYGG	1 cut(s)	757
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	410
BstKTI	GATC	6 cut(s)	7, 135, 240, 374, 542, 640
BstMAI	GTCTC	3 cut(s)	235, 314, 835
BstMBI	GATC	6 cut(s)	4, 132, 237, 371, 539, 637
BstPAI	GACNNNNGTC	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	170
BstSLI	GKGCMC	2 cut(s)	269, 507
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	4 cut(s)	48, 70, 156, 579
BstX2I	RGATCY	2 cut(s)	4, 539
BstYI	RGATCY	2 cut(s)	4, 539
Bsu36I	CCTNAGG	1 cut(s)	795
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	757
Cac8I	GCNNGC	2 cut(s)	80, 597
CciI	TCATGA	1 cut(s)	510
Cfr13I	GGNCC	4 cut(s)	152, 252, 265, 266
Csp6I	GTAC	1 cut(s)	97
CspCI	CAANNNNNGTGG	2 cut(s)	841, 876
CviAII	CATG	3 cut(s)	467, 511, 559
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	5 cut(s)	8, 159, 621, 737, 795
DpnI	GATC	6 cut(s)	6, 134, 239, 373, 541, 639
DpnII	GATC	6 cut(s)	4, 132, 237, 371, 539, 637
DraI	TTTAAA	2 cut(s)	712, 730
EciI	GGCGGA	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	228, 269
Eco47I	GGWCC	2 cut(s)	152, 252
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	50, 338
Eco72I	CACGTG	1 cut(s)	118
Eco81I	CCTNAGG	1 cut(s)	795
EcoICRI	GAGCTC	1 cut(s)	226
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoO109I	RGGNCCY	3 cut(s)	252, 265, 266
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	2 cut(s)	228, 269
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	3 cut(s)	470, 514, 562
FaiI	YATR	8 cut(s)	325, 415, 468, 494, 512, 534, 560, 816
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	3 cut(s)	466, 510, 558
FauI	CCCGC	2 cut(s)	254, 829
Fnu4HI	GCNGC	6 cut(s)	59, 62, 104, 170, 219, 593
FriOI	GRGCYC	2 cut(s)	228, 269
Fsp4HI	GCNGC	6 cut(s)	59, 62, 104, 170, 219, 593
FspBI	CTAG	2 cut(s)	44, 258
GluI	GCNGC	6 cut(s)	59, 62, 104, 170, 219, 593
GsaI	CCCAGC	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	470, 514, 562
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	3 cut(s)	623, 682, 788
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	4 cut(s)	51, 97, 301, 787
Hpy188I	TCNGA	7 cut(s)	9, 69, 162, 247, 318, 622, 738
Hpy188III	TCNNGA	4 cut(s)	482, 511, 575, 679
Hpy8I	GTNNAC	4 cut(s)	51, 97, 301, 787
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	488, 517, 553
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	3 cut(s)	90, 117, 824
HpyCH4V	TGCA	5 cut(s)	78, 172, 404, 449, 562
HpyF3I	CTNAG	5 cut(s)	8, 159, 621, 737, 795
HpySE526I	ACGT	3 cut(s)	90, 117, 824
Hsp92II	CATG	3 cut(s)	470, 514, 562
Kzo9I	GATC	6 cut(s)	4, 132, 237, 371, 539, 637
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	4 cut(s)	48, 70, 156, 579
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	2 cut(s)	44, 258
MaeII	ACGT	3 cut(s)	90, 117, 824
MalI	GATC	6 cut(s)	6, 134, 239, 373, 541, 639
MboI	GATC	6 cut(s)	4, 132, 237, 371, 539, 637
MboII	GAAGA	4 cut(s)	232, 535, 563, 638
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	4, 539
MhlI	GDGCHC	3 cut(s)	228, 269, 507
MluCI	AATT	3 cut(s)	375, 660, 874
MluI	ACGCGT	1 cut(s)	408
MlyI	GAGTC	2 cut(s)	632, 782
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	6 cut(s)	215, 349, 571, 758, 761, 790
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	7 cut(s)	183, 444, 498, 693, 711, 729, 872
MspA1I	CMGCKG	4 cut(s)	61, 106, 169, 274
MspCI	CTTAAG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	80
MvnI	CGCG	1 cut(s)	410
NdeII	GATC	6 cut(s)	4, 132, 237, 371, 539, 637
NlaIII	CATG	3 cut(s)	470, 514, 562
NlaIV	GGNNCC	6 cut(s)	153, 254, 266, 267, 268, 504
NmeAIII	GCCGAG	1 cut(s)	247
NsiI	ATGCAT	1 cut(s)	451
PagI	TCATGA	1 cut(s)	510
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	682
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	6 cut(s)	60, 63, 105, 171, 220, 594
PleI	GAGTC	2 cut(s)	631, 782
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
PpsI	GAGTC	2 cut(s)	631, 782
Ppu21I	YACGTR	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	252
PshAI	GACNNNNGTC	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	252
PspCI	CACGTG	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	270
PspN4I	GGNNCC	6 cut(s)	153, 254, 266, 267, 268, 504
PspOMI	GGGCCC	1 cut(s)	265
PspPI	GGNCC	4 cut(s)	152, 252, 265, 266
PspPPI	RGGWCCY	1 cut(s)	252
PsrI	GAACNNNNNNTAC	2 cut(s)	80, 112
PstI	CTGCAG	1 cut(s)	174
PsuI	RGATCY	2 cut(s)	4, 539
PvuII	CAGCTG	3 cut(s)	61, 169, 274
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	7 cut(s)	183, 444, 498, 693, 711, 729, 872
SatI	GCNGC	6 cut(s)	59, 62, 104, 170, 219, 593
Sau3AI	GATC	6 cut(s)	4, 132, 237, 371, 539, 637
Sau96I	GGNCC	4 cut(s)	152, 252, 265, 266
SchI	GAGTC	2 cut(s)	632, 782
SduI	GDGCHC	3 cut(s)	228, 269, 507
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	170
SinI	GGWCC	2 cut(s)	152, 252
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	375, 660, 874
SsiI	CCGC	5 cut(s)	104, 219, 261, 365, 836
SspMI	CTAG	2 cut(s)	44, 258
SstI	GAGCTC	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	3 cut(s)	93, 120, 827
TaqI	TCGA	3 cut(s)	86, 483, 574
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	3 cut(s)	375, 660, 874
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	2 cut(s)	106, 221
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	7 cut(s)	183, 444, 498, 693, 711, 729, 872
Tru9I	TTAA	7 cut(s)	183, 444, 498, 693, 711, 729, 872
TseI	GCWGC	4 cut(s)	58, 61, 169, 592
TspDTI	ATGAA	2 cut(s)	499, 690
TspGWI	ACGGA	1 cut(s)	746
Van91I	CCANNNNNTGG	1 cut(s)	758
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	152, 252
XagI	CCTNNNNNAGG	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XspI	CTAG	2 cut(s)	44, 258
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.