Rorug06G0293100

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
44495361 .. 44496921
1561 bp
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UTR
Exon/CDS
Intron
Rorug06G0293100.1

Sequence Viewer

Length: 348 bp
ATGGAGTTATCACAGGTCCAACTAAATAAGTTGGGAGATCAGCTTGGTTTAGATGCTTATGGAATTCATGCCAATGAAGAGGATTCAAGTATTAATATTGTCAGCTACAGGGAAACTCATTTTCCAGTCCCCTTAAATAAGGAGCAGCTGAATGATGTTTCTCCGAGCAAGAAAAGGCTCGATGTAAATAGGAATTCTGCCAAGGAACCAAAACGAGGTGAAGGGCAAGCTGTGGCTATTGTGGCAGCAGTAACCTTACATGGAAGGTGCCTGCCTTTGCTTCAAACTTTGGAAGAACTGACAGTTGCTGAGGTCTATATGGTGAATCATTGTGATTTGGCTGCTTAA

Protein Analysis

115

Amino Acids

12.68

Weight (kDa)

5.27

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 267
AcsI RAATTY 2 cut(s) 63, 193
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 2 cut(s) 87, 284
AluBI AGCT 4 cut(s) 43, 105, 148, 230
AluI AGCT 4 cut(s) 43, 105, 148, 230
AlwNI CAGNNNCTG 1 cut(s) 308
ApeKI GCWGC 3 cut(s) 145, 245, 341
ApoI RAATTY 2 cut(s) 63, 193
AseI ATTAAT 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 230, 334
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 267
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 3 cut(s) 157, 257, 328
BfmI CTRYAG 1 cut(s) 106
BisI GCNGC 3 cut(s) 146, 246, 342
BlsI GCNGC 3 cut(s) 147, 247, 343
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 207, 269
BmsI GCATC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 157, 257, 328
BshNI GGYRCC 1 cut(s) 267
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 207, 269
BspT107I GGYRCC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 228, 272
BstDEI CTNAG 1 cut(s) 309
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 106
BstV1I GCAGC 3 cut(s) 157, 257, 328
Cac8I GCNNGC 2 cut(s) 228, 272
CaiI CAGNNNCTG 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 16
CviAII CATG 2 cut(s) 68, 260
CviJI RGCY 7 cut(s) 43, 105, 148, 178, 230, 236, 341
CviKI_1 RGCY 7 cut(s) 43, 105, 148, 178, 230, 236, 341
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 16
EcoRI GAATTC 2 cut(s) 63, 193
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 71, 263
FaiI YATR 5 cut(s) 60, 69, 261, 318, 320
FaqI GGGAC 1 cut(s) 113
FatI CATG 2 cut(s) 67, 259
Fnu4HI GCNGC 3 cut(s) 146, 246, 342
Fsp4HI GCNGC 3 cut(s) 146, 246, 342
GluI GCNGC 3 cut(s) 146, 246, 342
Hin1II CATG 2 cut(s) 71, 263
HinfI GANTC 2 cut(s) 83, 325
HphI GGTGA 2 cut(s) 230, 334
Hpy188I TCNGA 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 215, 258
HpyCH4III ACNGT 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 2 cut(s) 71, 263
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 94, 138, 284
Lsp1109I GCAGC 3 cut(s) 157, 257, 328
LweI GCATC 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 89, 305
MluCI AATT 2 cut(s) 63, 193
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 3 cut(s) 73, 209, 304
MseI TTAA 3 cut(s) 93, 134, 346
MslI CAYNNNNRTG 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 37
NlaIII CATG 2 cut(s) 71, 263
NlaIV GGNNCC 2 cut(s) 207, 269
PfeI GAWTC 2 cut(s) 83, 325
PkrI GCNGC 3 cut(s) 147, 247, 343
PshBI ATTAAT 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 207, 269
PspPI GGNCC 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 3 cut(s) 93, 134, 346
SatI GCNGC 3 cut(s) 146, 246, 342
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 16
SetI ASST 9 cut(s) 18, 45, 107, 150, 220, 232, 257, 269, 315
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 2 cut(s) 63, 193
SspI AATATT 1 cut(s) 97
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 63, 193
TfiI GAWTC 2 cut(s) 83, 325
Tru1I TTAA 3 cut(s) 93, 134, 346
Tru9I TTAA 3 cut(s) 93, 134, 346
TseI GCWGC 3 cut(s) 145, 245, 341
TspDTI ATGAA 2 cut(s) 56, 90
VpaK11BI GGWCC 1 cut(s) 16
VspI ATTAAT 1 cut(s) 93
XapI RAATTY 2 cut(s) 63, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.