Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002697

Physical Location & Seq

Genomic Coordinates Reverse (-)

19028841 .. 19029844

Gene Structure 1004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGGAGAGAGTATGGTTCTGTTTCCGCGAAATCGCTTCCGTTGTCCTTGTCGAAGGAAGCTAAAGAGGTGGTCCACGCGGCAGTCAATGGAGCCGAGGAAGTGCGTATGGAGGTGAACTCGTGGGCTTTACGTCACACCAATGGTCTCATCAAAAATCTTCTACCTCCTGGATCTGTTACAAACCAAACCATTAAGATTTATGGAAACGCACTGTACTTCAAGGGAGCTTGGGAAAACAAATTCGGTAAGTCAATGACGATACACAAACCTTTCCACCTTGTCAATGGCAAACAAGTACTTGTGCCTTTCATGAAAAGCTATGAAAGAAAATATATGAAGGCTTACAATGGTTTCAAGGTCCTTAGAATACTACAATACCGAGTAGACTATAAGGATACAAGTCGCCAATTCTCAATTGACATGGATCTTAATGTTTTGATTGAGATCGATGAAGAAAGTGCAGAAGCTGCGGCTGCTACTGCTCTAGCTTGCACAGTTGCACTTGTGTGGCTGCAGCGCTATTATGCCGCCTCCTCCCATAGATTTTGTGGCAGATTATCCATTTCTTTTCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034641 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046483 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0098772 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

193

Amino Acids

21.89

Weight (kDa)

9.45

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	23 - 124	2.2e-22	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47710 AT1G47710 AT1G51330 AT1G62160 AT1G62170 AT1G62170 AT1G63280 AT1G64010 AT1G64010 AT1G64030 AT2G14540 AT2G25240 AT2G26390 AT2G35580 AT3G45220
fragaria_vesca	FvH4_2g40700
malus_domestica	MD08G1040600.v1.1 MD08G1041200.v1.1 MD08G1041300.v1.1 MD08G1041500.v1.1 MD08G1041600.v1.1 MD14G1097300.v1.1 MD15G1035000.v1.1 MD15G1286900.v1.1
prunus_persica	Prupe.1G389200_v2.0.a1 Prupe.1G389300_v2.0.a1 Prupe.3G141200_v2.0.a1
pyrus_communis	pycom08g03320 pycom08g03330 pycom08g03340 pycom08g03360 pycom15g03220
rosa_chinensis	RchiOBHm_Chr6g0299901
rosa_laevigata	RLG00000011377
rosa_multiflora	Rmu_ssc0000158.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168290
rosa_rugosa	Rorug06G0293100
rosa_samantha	Rh4AG219100
rosa_wichuraiana	Rw6G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	2 cut(s)	29, 80
AciI	CCGC	4 cut(s)	27, 80, 473, 531
AclWI	GGATC	2 cut(s)	181, 435
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	2 cut(s)	218, 300
AfeI	AGCGCT	1 cut(s)	521
AgsI	TTSAA	2 cut(s)	223, 358
AjnI	CCWGG	1 cut(s)	169
AleI	CACNNNNGTG	1 cut(s)	508
AluBI	AGCT	5 cut(s)	62, 230, 321, 470, 491
AluI	AGCT	5 cut(s)	62, 230, 321, 470, 491
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	181, 435
AlwNI	CAGNNNCTG	1 cut(s)	470
Aor51HI	AGCGCT	1 cut(s)	521
ApeKI	GCWGC	4 cut(s)	470, 476, 514, 517
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	2 cut(s)	73, 361
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	2 cut(s)	73, 361
BauI	CACGAG	1 cut(s)	121
BbvI	GCAGC	4 cut(s)	457, 463, 501, 529
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	391
BisI	GCNGC	7 cut(s)	81, 471, 474, 477, 515, 518, 531
BlsI	GCNGC	7 cut(s)	82, 472, 475, 478, 516, 519, 532
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	2 cut(s)	73, 361
BmgT120I	GGNCC	2 cut(s)	73, 361
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
Bsa29I	ATCGAT	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	446
BseRI	GAGGAG	2 cut(s)	19, 526
BseXI	GCAGC	4 cut(s)	457, 463, 501, 529
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	29, 80
BshVI	ATCGAT	1 cut(s)	450
BsmAI	GTCTC	1 cut(s)	152
Bso31I	GGTCTC	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	173, 427, 447
BspACI	CCGC	4 cut(s)	27, 80, 473, 531
BspDI	ATCGAT	1 cut(s)	450
BspFNI	CGCG	2 cut(s)	29, 80
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	519
BspPI	GGATC	2 cut(s)	181, 435
BspTNI	GGTCTC	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	3 cut(s)	173, 427, 447
BssSI	CACGAG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	216, 499
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	1 cut(s)	365
BstFNI	CGCG	2 cut(s)	29, 80
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	3 cut(s)	176, 430, 450
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	173, 427, 447
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 476, 482
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	515
BstUI	CGCG	2 cut(s)	29, 80
BstV1I	GCAGC	4 cut(s)	457, 463, 501, 529
BstX2I	RGATCY	2 cut(s)	173, 427
BstYI	RGATCY	2 cut(s)	173, 427
Bsu15I	ATCGAT	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	391
BsuTUI	ATCGAT	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	493
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	73, 361
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	217, 299
CviAII	CATG	2 cut(s)	313, 424
CviQI	GTAC	2 cut(s)	217, 299
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	3 cut(s)	175, 429, 449
DpnII	GATC	3 cut(s)	173, 427, 447
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	73, 361
Eco47III	AGCGCT	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	316, 427
FatI	CATG	2 cut(s)	312, 423
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	7 cut(s)	81, 471, 474, 477, 515, 518, 531
Fsp4HI	GCNGC	7 cut(s)	81, 471, 474, 477, 515, 518, 531
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	7 cut(s)	81, 471, 474, 477, 515, 518, 531
HaeII	RGCGCY	1 cut(s)	523
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	2 cut(s)	316, 427
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	3 cut(s)	76, 118, 388
Hpy188III	TCNNGA	2 cut(s)	313, 575
Hpy8I	GTNNAC	3 cut(s)	76, 118, 388
HpyAV	CCTTC	2 cut(s)	49, 334
HpyCH4III	ACNGT	2 cut(s)	216, 499
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	464, 495, 503, 517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 476, 482
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	2 cut(s)	316, 427
HspAI	GCGC	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	173, 427, 447
LmnI	GCTCC	2 cut(s)	92, 227
LpnPI	CCDG	2 cut(s)	156, 183
Lsp1109I	GCAGC	4 cut(s)	457, 463, 501, 529
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	2 cut(s)	134, 178
MalI	GATC	3 cut(s)	175, 429, 449
MboI	GATC	3 cut(s)	173, 427, 447
MboII	GAAGA	2 cut(s)	152, 467
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	2 cut(s)	173, 427
MluCI	AATT	3 cut(s)	242, 410, 417
MnlI	CCTC	6 cut(s)	61, 91, 106, 177, 544, 547
MseI	TTAA	2 cut(s)	195, 432
MslI	CAYNNNNRTG	2 cut(s)	141, 508
MspR9I	CCNGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	2 cut(s)	29, 80
MwoI	GCNNNNNNNGC	3 cut(s)	470, 476, 482
NdeII	GATC	3 cut(s)	173, 427, 447
NlaIII	CATG	2 cut(s)	316, 427
NlaIV	GGNNCC	1 cut(s)	94
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	134
OliI	CACNNNNGTG	1 cut(s)	508
PagI	TCATGA	1 cut(s)	312
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	7 cut(s)	82, 472, 475, 478, 516, 519, 532
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	73, 361
PspPPI	RGGWCCY	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	519
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	173, 427
RsaI	GTAC	2 cut(s)	218, 300
RsaNI	GTAC	2 cut(s)	217, 299
RseI	CAYNNNNRTG	2 cut(s)	141, 508
SaqAI	TTAA	2 cut(s)	195, 432
SatI	GCNGC	7 cut(s)	81, 471, 474, 477, 515, 518, 531
Sau3AI	GATC	3 cut(s)	173, 427, 447
Sau96I	GGNCC	2 cut(s)	73, 361
ScaI	AGTACT	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	515
SinI	GGWCC	2 cut(s)	73, 361
SmiMI	CAYNNNNRTG	2 cut(s)	141, 508
Sse9I	AATT	3 cut(s)	242, 410, 417
SsiI	CCGC	4 cut(s)	27, 80, 473, 531
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	216, 499
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	53, 450
TasI	AATT	3 cut(s)	242, 410, 417
TatI	WGTACW	2 cut(s)	216, 298
TauI	GCSGC	3 cut(s)	83, 476, 533
Tru1I	TTAA	2 cut(s)	195, 432
Tru9I	TTAA	2 cut(s)	195, 432
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	4 cut(s)	470, 476, 514, 517
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	5 cut(s)	301, 329, 339, 353, 468
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	2 cut(s)	73, 361
XapI	RAATTY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	2 cut(s)	284, 548
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.