Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002697

Physical Location & Seq

Genomic Coordinates Reverse (-)

16564881 .. 16566330

Gene Structure 1450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAGTTGGGAAAATCAATGGAGAATCAAACCGACGTCATGGTATTACTAGCAAAGCATGTCATCCCTACCGTTGCCAACGGCTCCAACCTTGTCTTCTCACCAATGTCAATCAACGTTTTGCTCTGCCTGATTGCCGCTGGTTCCAACTGCGTCACCAAAGAACAAATCTTATCATTCATCATGTTACCCTCATCGGATTACCTCAACGCAGTCTTAGCGAAAACCGTATCTGTTGCCTTAAATGATGGAATGGAGAGAAGTGACTTGCACTTATCTACGGCTTATGGTGTATGGATTGACAAATCTTTATCCTTCAAACCTTCCTTTAAAGATCTTTTGGAGAACTCCTATAACGCTACTTGTAATCAAGTTGACTTCGCAACCAAGCCTGCTGAAGTGATTAATGAAGTGAATGCATGGGCTGAAGTCCACACCAATGGACTCATCAAAGAGATTCTTTCAGACGATTCTATCAAGACTATCCGTGAAAGTATGCTAATACTTGCTAATGCAGTGTACTTCAAAGGAGCTTGGAGCAAAAAATTTGATGCAAAGTTAACAAAAAGTTACGATTTTCATCTTCTTGACGGCACCATGGTGAAAGTCCCCTTCATGACCAATTACAAGAAGCAATACCTAGAATATTATGATGGTTTCAAAGTTTTGCGTCTTCCTTATGTAGAAGATCAACGTCAATTCGCCATGTACATTTATCTTCCTAATGATAGAGATGGATTACCTACTCTTCTTGAGGAAATAAGCTCCAAACCCCGATTTCTTGATAACCATATTCCGCGCCAACGTATATTAACGGAAGCTTTCAAGATTCCAAAGTTTAAGTTCTCTTTCGAGTTTAAAGCTTCAGATGTTTTGAAGGAAATGGGGCTGACTTTACCATTTACACATGGTAGTCTAACCGAGATGGTTGAGTCGCCTTCCATTCCCGAGAATCTATGCGTCGCTGAGAATTTGTTCGTCTCAAATGTTTTTCACAAAGCTTGCATTGAGGTGGATGAAGAGGGAACTGAAGCTGCAGCCGTTTCTGTTGCCAGCATGACAAAGGACATGTTGTTGATGGGAGATTTCGTAGCTGATCATCCATTTCTATTCACAGTGAGAGAAGAGAAGAGTGGAGTGATTTTGTTCATGGGTCAAGTTCTTGATCCTTCAATACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034641 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046483 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0098772 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko05146 map00190 map01100 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

393

Amino Acids

44.17

Weight (kDa)

5.22

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	10 - 390	1.3e-90	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47710 AT1G47710 AT1G51330 AT1G62160 AT1G62170 AT1G62170 AT1G63280 AT1G64010 AT1G64010 AT1G64030 AT2G14540 AT2G25240 AT2G26390 AT2G35580 AT3G45220
fragaria_vesca	FvH4_2g40700
malus_domestica	MD08G1040600.v1.1 MD08G1041200.v1.1 MD08G1041300.v1.1 MD08G1041500.v1.1 MD08G1041600.v1.1 MD14G1097300.v1.1 MD15G1035000.v1.1 MD15G1286900.v1.1
prunus_persica	Prupe.1G389200_v2.0.a1 Prupe.1G389300_v2.0.a1 Prupe.3G141200_v2.0.a1
pyrus_communis	pycom08g03320 pycom08g03330 pycom08g03340 pycom08g03360 pycom15g03220
rosa_chinensis	RchiOBHm_Chr6g0299901
rosa_laevigata	RLG00000011377
rosa_multiflora	Rmu_ssc0000158.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168290
rosa_rugosa	Rorug06G0293100
rosa_samantha	Rh4AG219100
rosa_wichuraiana	Rw6G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	593
AccII	CGCG	1 cut(s)	799
AciI	CCGC	2 cut(s)	138, 797
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	1 cut(s)	1160
AcsI	RAATTY	2 cut(s)	545, 970
AcuI	CTGAAG	4 cut(s)	417, 447, 849, 1050
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	521, 710
AflIII	ACRYGT	1 cut(s)	1068
AgsI	TTSAA	6 cut(s)	319, 526, 661, 826, 877, 1173
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AleI	CACNNNNGTG	1 cut(s)	599
AluBI	AGCT	7 cut(s)	533, 765, 821, 863, 1001, 1034, 1094
AluI	AGCT	7 cut(s)	533, 765, 821, 863, 1001, 1034, 1094
Alw26I	GTCTC	1 cut(s)	985
AlwI	GGATC	1 cut(s)	1160
Ama87I	CYCGRG	1 cut(s)	947
ApeKI	GCWGC	2 cut(s)	1034, 1037
ApoI	RAATTY	2 cut(s)	545, 970
AseI	ATTAAT	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	974
AspLEI	GCGC	1 cut(s)	801
AsuHPI	GGTGA	3 cut(s)	93, 148, 613
AvaI	CYCGRG	1 cut(s)	947
BanI	GGYRCC	1 cut(s)	593
BbsI	GAAGAC	2 cut(s)	88, 665
BbvI	GCAGC	2 cut(s)	1021, 1049
BccI	CCATC	5 cut(s)	242, 647, 728, 919, 1072
BceAI	ACGGC	4 cut(s)	97, 297, 607, 1025
BclI	TGATCA	1 cut(s)	1096
BcoDI	GTCTC	1 cut(s)	985
BfaI	CTAG	2 cut(s)	50, 641
BfmI	CTRYAG	1 cut(s)	1035
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	3 cut(s)	138, 1035, 1038
BlsI	GCNGC	3 cut(s)	139, 1036, 1039
BmeT110I	CYCGRG	1 cut(s)	947
BmiI	GGNNCC	3 cut(s)	85, 145, 595
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	2 cut(s)	88, 665
BpuEI	CTTGAG	1 cut(s)	773
BsaBI	GATNNNNATC	1 cut(s)	579
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	597
BsaXI	ACNNNNNCTCC	2 cut(s)	1074, 1104
Bse8I	GATNNNNATC	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	3 cut(s)	63, 1021, 1099
BseJI	GATNNNNATC	1 cut(s)	579
BseMII	CTCAG	1 cut(s)	957
BseXI	GCAGC	2 cut(s)	1021, 1049
Bsh1236I	CGCG	1 cut(s)	799
BshNI	GGYRCC	1 cut(s)	593
BsiHKCI	CYCGRG	1 cut(s)	947
BslFI	GGGAC	1 cut(s)	593
BsmAI	GTCTC	1 cut(s)	985
BsmBI	CGTCTC	1 cut(s)	985
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	1 cut(s)	421
BsoBI	CYCGRG	1 cut(s)	947
Bsp1407I	TGTACA	1 cut(s)	708
Bsp143I	GATC	4 cut(s)	334, 688, 1096, 1165
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	2 cut(s)	138, 797
BspCNI	CTCAG	1 cut(s)	958
BspFNI	CGCG	1 cut(s)	799
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	3 cut(s)	85, 145, 595
BspMAI	CTGCAG	1 cut(s)	1039
BspPI	GGATC	1 cut(s)	1160
BspT107I	GGYRCC	1 cut(s)	593
BsrGI	TGTACA	1 cut(s)	708
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	4 cut(s)	334, 688, 1096, 1165
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	73, 229, 1117
Bst6I	CTCTTC	4 cut(s)	753, 1014, 1119, 1124
BstACI	GRCGYC	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	708
BstC8I	GCNNGC	3 cut(s)	393, 1003, 1054
BstDEI	CTNAG	2 cut(s)	217, 966
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	3 cut(s)	63, 1021, 1099
BstFNI	CGCG	1 cut(s)	799
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	4 cut(s)	337, 691, 1099, 1168
BstMAI	GTCTC	1 cut(s)	985
BstMBI	GATC	4 cut(s)	334, 688, 1096, 1165
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNSI	RCATGY	2 cut(s)	62, 1072
BstSFI	CTRYAG	1 cut(s)	1035
BstUI	CGCG	1 cut(s)	799
BstV1I	GCAGC	2 cut(s)	1021, 1049
BstV2I	GAAGAC	2 cut(s)	88, 665
BstX2I	RGATCY	1 cut(s)	334
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	63, 1021, 1099
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	522, 1122
Cac8I	GCNNGC	3 cut(s)	393, 1003, 1054
CciI	TCATGA	1 cut(s)	615
CfoI	GCGC	1 cut(s)	801
CseI	GACGC	3 cut(s)	142, 659, 949
Csp6I	GTAC	2 cut(s)	520, 709
CviQI	GTAC	2 cut(s)	520, 709
DdeI	CTNAG	2 cut(s)	217, 966
DpnI	GATC	4 cut(s)	336, 690, 1098, 1167
DpnII	GATC	4 cut(s)	334, 688, 1096, 1165
DraI	TTTAAA	2 cut(s)	331, 859
Eam1104I	CTCTTC	4 cut(s)	753, 1014, 1119, 1124
EarI	CTCTTC	4 cut(s)	753, 1014, 1119, 1124
Eco130I	CCWWGG	1 cut(s)	597
Eco57I	CTGAAG	4 cut(s)	417, 447, 849, 1050
Eco88I	CYCGRG	1 cut(s)	947
EcoT14I	CCWWGG	1 cut(s)	597
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	597
Esp3I	CGTCTC	1 cut(s)	985
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	1 cut(s)	593
FbaI	TGATCA	1 cut(s)	1096
Fnu4HI	GCNGC	3 cut(s)	138, 1035, 1038
FokI	GGATG	3 cut(s)	50, 1028, 1086
Fsp4HI	GCNGC	3 cut(s)	138, 1035, 1038
FspBI	CTAG	2 cut(s)	50, 641
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	3 cut(s)	138, 1035, 1038
HgaI	GACGC	3 cut(s)	142, 659, 949
HhaI	GCGC	1 cut(s)	801
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HincII	GTYRAC	2 cut(s)	376, 561
HindII	GTYRAC	2 cut(s)	376, 561
HindIII	AAGCTT	3 cut(s)	819, 861, 999
HinfI	GANTC	7 cut(s)	25, 444, 457, 470, 829, 932, 952
HpaI	GTTAAC	1 cut(s)	561
HphI	GGTGA	3 cut(s)	93, 148, 613
Hpy166II	GTNNAC	4 cut(s)	376, 433, 520, 561
Hpy188I	TCNGA	3 cut(s)	199, 466, 868
Hpy188III	TCNNGA	8 cut(s)	478, 587, 616, 752, 782, 826, 947, 1163
Hpy8I	GTNNAC	4 cut(s)	376, 433, 520, 561
Hpy99I	CGWCG	2 cut(s)	38, 965
HpyAV	CCTTC	6 cut(s)	325, 333, 622, 871, 948, 1179
HpyCH4III	ACNGT	3 cut(s)	73, 229, 1117
HpyCH4IV	ACGT	4 cut(s)	36, 117, 694, 805
HpyCH4V	TGCA	6 cut(s)	271, 419, 515, 554, 1005, 1037
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	217, 966
HpySE526I	ACGT	4 cut(s)	36, 117, 694, 805
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	1 cut(s)	799
Ksp22I	TGATCA	1 cut(s)	1096
KspAI	GTTAAC	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	334, 688, 1096, 1165
LmnI	GCTCC	4 cut(s)	89, 530, 537, 770
LpnPI	CCDG	4 cut(s)	126, 143, 405, 1066
Lsp1109I	GCAGC	2 cut(s)	1021, 1049
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	2 cut(s)	50, 641
MaeII	ACGT	4 cut(s)	36, 117, 694, 805
MaeIII	GTNAC	4 cut(s)	154, 186, 263, 569
MalI	GATC	4 cut(s)	336, 690, 1098, 1167
MboI	GATC	4 cut(s)	334, 688, 1096, 1165
MboII	GAAGA	9 cut(s)	88, 575, 665, 698, 710, 740, 1031, 1136, 1141
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	4 cut(s)	545, 622, 698, 970
MlyI	GAGTC	2 cut(s)	438, 941
MmeI	TCCRAC	2 cut(s)	111, 171
MnlI	CCTC	5 cut(s)	202, 215, 748, 1003, 1015
Mph1103I	ATGCAT	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	974
MseI	TTAA	8 cut(s)	242, 330, 405, 560, 812, 840, 858, 1180
MslI	CAYNNNNRTG	3 cut(s)	438, 599, 1010
MspA1I	CMGCKG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	1 cut(s)	799
MwoI	GCNNNNNNNGC	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	4 cut(s)	334, 688, 1096, 1165
NlaIV	GGNNCC	3 cut(s)	85, 145, 595
NmuCI	GTSAC	2 cut(s)	154, 263
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	2 cut(s)	62, 1072
OliI	CACNNNNGTG	1 cut(s)	599
PagI	TCATGA	1 cut(s)	615
PciI	ACATGT	1 cut(s)	1068
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	974
PfeI	GAWTC	5 cut(s)	25, 457, 470, 829, 952
PkrI	GCNGC	3 cut(s)	139, 1036, 1039
PleI	GAGTC	2 cut(s)	438, 940
PpsI	GAGTC	2 cut(s)	438, 940
PscI	ACATGT	1 cut(s)	1068
PshBI	ATTAAT	1 cut(s)	405
Psp1406I	AACGTT	1 cut(s)	117
PspN4I	GGNNCC	3 cut(s)	85, 145, 595
PstI	CTGCAG	1 cut(s)	1039
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	521, 710
RsaNI	GTAC	2 cut(s)	520, 709
RseI	CAYNNNNRTG	3 cut(s)	438, 599, 1010
SaqAI	TTAA	8 cut(s)	242, 330, 405, 560, 812, 840, 858, 1180
SatI	GCNGC	3 cut(s)	138, 1035, 1038
Sau3AI	GATC	4 cut(s)	334, 688, 1096, 1165
SchI	GAGTC	2 cut(s)	438, 941
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	1 cut(s)	1035
SmiMI	CAYNNNNRTG	3 cut(s)	438, 599, 1010
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
Sse9I	AATT	4 cut(s)	545, 622, 698, 970
SsiI	CCGC	2 cut(s)	138, 797
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	2 cut(s)	50, 641
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	73, 229, 1117
TaiI	ACGT	4 cut(s)	39, 120, 697, 808
TaqI	TCGA	1 cut(s)	852
TasI	AATT	4 cut(s)	545, 622, 698, 970
TatI	WGTACW	2 cut(s)	519, 708
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	5 cut(s)	25, 457, 470, 829, 952
Tru1I	TTAA	8 cut(s)	242, 330, 405, 560, 812, 840, 858, 1180
Tru9I	TTAA	8 cut(s)	242, 330, 405, 560, 812, 840, 858, 1180
TscAI	CASTG	2 cut(s)	522, 1122
TseFI	GTSAC	2 cut(s)	154, 263
TseI	GCWGC	2 cut(s)	1034, 1037
Tsp45I	GTSAC	2 cut(s)	154, 263
TspDTI	ATGAA	6 cut(s)	169, 423, 569, 604, 1032, 1138
TspGWI	ACGGA	2 cut(s)	476, 830
TspRI	CASTG	2 cut(s)	522, 1122
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	2 cut(s)	545, 970
XceI	RCATGY	2 cut(s)	62, 1072
XmnI	GAANNNNTTC	1 cut(s)	974
XspI	CTAG	2 cut(s)	50, 641
ZraI	GACGTC	1 cut(s)	37
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.