Rw6G035390

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
59930008 .. 59931735
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035390.1

Sequence Viewer

Length: 1137 bp
ATGGATCTTAGGGCATCGATCGCGAACCAGACCGACGTCGGTTTGGGGATCACGAAGAAGCTGCTTCAGACCGAAGGCAAGGACAAGAACGTGGTCTACTCGCCGCTGTCCATCCATGTGGTGCTGAGCCTGATCGCCGCTGGCTCCAAGGGTCCCACACAGGAGCAGCTTCTCTCTTTCCTCAAGTCCACCGCTGCCGGCGACCTCAACTCCTTCGCCTCCGAGCTCGTCGCCGTGATCTTCGCCGACGGGTCACCCACCGGCGGTCCGCGGTTGTCGTTTGCCAATGGCATTTGGGTGGACAAGCCTCTGCCTTTCAAGCCTTCGTTCAAGGAGGTGGTGAACACTGCTTACAAGGCCGCTCTGAACCAAGTCGATTTCCAGACCAAAGCTGCTGAAGTGGCTGCTGGAGTGAATTTGTGGGCTGAGAAGGAGACTAGTGGCCTTATTAAAGAGGTTCTTCCTGTTGGGTCGATTGACAGCTCAACCAGGCTCATCTTTGCAAATGCATTATACTTCAAGGGAGCTTGGAATGAAAAGTTTGAGGCATCATTCACGAAAGAGTCAGACTTCCACCTTCTTGATGGGAGCAAAAAGCAGTTTTTAAGCGCCTATAACGATTTCAAAGTCTTGGGGCTTCCATACAAACAAGGGGAAGACAAGCGGCGCTTCTCCATGCACATCTTTCTTCCAGATGCCAAAGATGGGCTGACTGCATTGATTGAGAAAGTTGGTTCTGGATCAGGGTTCTTAGAGCGACATCTTCCCTATGAACAAGTTGCAGTGAGTGACTTCAAACTCCCAAAGTTCAAGATATCTTTCGGTTTTGAAGCTTCCAATTTACTGAAGGGTTTAGGACTGGTCTTGCCTTTCAGTGGTGAAGGAGGTTTGACAGAGATGGTGGACTCACCTGTGGGTCAGAACCTATACGTATCCAGCATATTCCACAAATCCTTCATTGAAGTAAATGAAGAAGGTACAGAAGCAGCAGCTGCCTCTGCTGGTGTTATAAAACTGAGGGGTATGCCTAAAACCATAGACTTTGTGGCTGACCACCCATTCCTCTTCCTCATCAAAGAAGAAATGACTGGAACCGTGCTGTTCATCGGGCATGTGCTCAATCCCCTTGCAGACTGA

Protein Analysis

378

Amino Acids

40.93

Weight (kDa)

5.88

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 9 - 375 5.6e-90 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1010
AatII GACGTC 1 cut(s) 39
AccBSI CCGCTC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 96
AccII CGCG 2 cut(s) 23, 271
AciI CCGC 8 cut(s) 104, 138, 192, 264, 269, 271, 360, 664
AclWI GGATC 3 cut(s) 12, 56, 748
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 3 cut(s) 50, 417, 866
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 979
AfiI CCNNNNNNNGG 3 cut(s) 263, 705, 875
AgsI TTSAA 8 cut(s) 319, 331, 520, 625, 796, 811, 830, 962
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 8 cut(s) 61, 169, 226, 392, 483, 527, 833, 992
AluI AGCT 8 cut(s) 61, 169, 226, 392, 483, 527, 833, 992
Alw21I GWGCWC 2 cut(s) 228, 1119
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 3 cut(s) 12, 56, 748
AlwNI CAGNNNCTG 1 cut(s) 992
AoxI GGCC 2 cut(s) 357, 442
ApeKI GCWGC 8 cut(s) 61, 166, 194, 392, 404, 986, 989, 992
ApoI RAATTY 1 cut(s) 415
AspLEI GCGC 2 cut(s) 611, 669
AspS9I GGNCC 2 cut(s) 152, 266
AsuHPI GGTGA 4 cut(s) 246, 352, 890, 900
AvaII GGWCC 2 cut(s) 152, 266
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 2 cut(s) 228, 1119
BbvI GCAGC 8 cut(s) 48, 178, 181, 379, 391, 979, 998, 1001
BccI CCATC 4 cut(s) 119, 578, 698, 892
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 1 cut(s) 490
BciVI GTATCC 1 cut(s) 943
BcoDI GTCTC 1 cut(s) 428
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 1 cut(s) 438
BfoI RGCGCY 2 cut(s) 612, 670
BfuI GTATCC 1 cut(s) 943
BlpI GCTNAGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 490
Bme18I GGWCC 2 cut(s) 152, 266
BmgT120I GGNCC 2 cut(s) 152, 266
BmiI GGNNCC 4 cut(s) 145, 153, 154, 1093
BmrFI CCNGG 1 cut(s) 490
BmsI GCATC 3 cut(s) 23, 557, 685
BoxI GACNNNNGTC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 663
BpmI CTGGAG 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 17
BsaAI YACGTR 1 cut(s) 931
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 147, 269
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 263, 705, 875
Bse118I RCCGGY 2 cut(s) 197, 260
Bse1I ACTGG 2 cut(s) 864, 1093
BseBI CCWGG 1 cut(s) 490
BseCI ATCGAT 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 147, 269
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 263, 705, 875
BseMII CTCAG 3 cut(s) 116, 417, 1007
BseNI ACTGG 2 cut(s) 864, 1093
BseXI GCAGC 8 cut(s) 48, 178, 181, 379, 391, 979, 998, 1001
Bsh1236I CGCG 2 cut(s) 23, 271
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 359, 444
BshVI ATCGAT 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 228, 1119
BsiSI CCGG 2 cut(s) 198, 261
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 3 cut(s) 263, 705, 875
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 2 cut(s) 359, 444
Bsp1286I GDGCHC 2 cut(s) 228, 1119
Bsp143I GATC 6 cut(s) 4, 18, 48, 132, 237, 740
Bsp1720I GCTNAGC 1 cut(s) 125
Bsp68I TCGCGA 1 cut(s) 23
BspACI CCGC 8 cut(s) 104, 138, 192, 264, 269, 271, 360, 664
BspANI GGCC 2 cut(s) 359, 444
BspCNI CTCAG 3 cut(s) 117, 418, 1008
BspDI ATCGAT 1 cut(s) 17
BspFNI CGCG 2 cut(s) 23, 271
BspLI GGNNCC 4 cut(s) 145, 153, 154, 1093
BspPI GGATC 3 cut(s) 12, 56, 748
BsrBI CCGCTC 1 cut(s) 362
BsrFI RCCGGY 2 cut(s) 197, 260
BsrI ACTGG 2 cut(s) 864, 1093
BssAI RCCGGY 2 cut(s) 197, 260
BssECI CCNNGG 2 cut(s) 147, 269
BssMI GATC 6 cut(s) 4, 18, 48, 132, 237, 740
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 1 cut(s) 1096
Bst6I CTCTTC 1 cut(s) 1070
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 992
BstBAI YACGTR 1 cut(s) 931
BstC8I GCNNGC 2 cut(s) 142, 199
BstDEI CTNAG 5 cut(s) 8, 125, 426, 751, 1016
BstDSI CCRYGG 1 cut(s) 269
BstEII GGTNACC 1 cut(s) 252
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 23, 271
BstH2I RGCGCY 2 cut(s) 612, 670
BstHHI GCGC 2 cut(s) 611, 669
BstKTI GATC 6 cut(s) 7, 21, 51, 135, 240, 743
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 6 cut(s) 4, 18, 48, 132, 237, 740
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 6 cut(s) 20, 319, 356, 401, 992, 998
BstNI CCWGG 1 cut(s) 490
BstNSI RCATGY 1 cut(s) 1115
BstPAI GACNNNNGTC 1 cut(s) 35
BstPI GGTNACC 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 488
BstSNI TACGTA 1 cut(s) 931
BstUI CGCG 2 cut(s) 23, 271
BstV1I GCAGC 8 cut(s) 48, 178, 181, 379, 391, 979, 998, 1001
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 17
BsuI GTATCC 1 cut(s) 943
BsuRI GGCC 2 cut(s) 359, 444
BsuTUI ATCGAT 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 2 cut(s) 345, 789
BtsIMutI CAGTG 3 cut(s) 345, 789, 880
BtuMI TCGCGA 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 142, 199
CaiI CAGNNNCTG 1 cut(s) 992
CfoI GCGC 2 cut(s) 611, 669
Cfr10I RCCGGY 2 cut(s) 197, 260
Cfr13I GGNCC 2 cut(s) 152, 266
Cfr42I CCGCGG 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 17
CpoI CGGWCCG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 978
CspI CGGWCCG 1 cut(s) 266
CviAII CATG 3 cut(s) 116, 676, 1112
CviQI GTAC 1 cut(s) 978
DdeI CTNAG 5 cut(s) 8, 125, 426, 751, 1016
DpnI GATC 6 cut(s) 6, 20, 50, 134, 239, 742
DpnII GATC 6 cut(s) 4, 18, 48, 132, 237, 740
Eam1104I CTCTTC 1 cut(s) 1070
EarI CTCTTC 1 cut(s) 1070
Ecl136II GAGCTC 1 cut(s) 226
Eco105I TACGTA 1 cut(s) 931
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 228
Eco32I GATATC 1 cut(s) 816
Eco47I GGWCC 2 cut(s) 152, 266
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 3 cut(s) 50, 417, 866
Eco91I GGTNACC 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 488
EcoRV GATATC 1 cut(s) 816
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 119, 679, 1115
FalI AAGNNNNNCTT 4 cut(s) 444, 476, 653, 685
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 115, 675, 1111
FblI GTMKAC 1 cut(s) 96
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 1 cut(s) 438
GlaI GCGC 2 cut(s) 610, 668
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 2 cut(s) 612, 670
HaeIII GGCC 2 cut(s) 359, 444
HapII CCGG 2 cut(s) 198, 261
HhaI GCGC 2 cut(s) 611, 669
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 3 cut(s) 119, 679, 1115
Hin6I GCGC 2 cut(s) 609, 667
HinP1I GCGC 2 cut(s) 609, 667
HindIII AAGCTT 1 cut(s) 831
HinfI GANTC 2 cut(s) 563, 905
HpaII CCGG 2 cut(s) 198, 261
HphI GGTGA 4 cut(s) 246, 352, 890, 900
Hpy166II GTNNAC 5 cut(s) 97, 189, 301, 343, 904
Hpy188I TCNGA 5 cut(s) 69, 223, 366, 568, 921
Hpy188III TCNNGA 8 cut(s) 22, 52, 382, 556, 581, 692, 738, 811
Hpy8I GTNNAC 5 cut(s) 97, 189, 301, 343, 904
Hpy99I CGWCG 4 cut(s) 38, 41, 233, 251
HpyAV CCTTC 9 cut(s) 68, 223, 333, 424, 587, 841, 875, 964, 968
HpyCH4III ACNGT 1 cut(s) 1096
HpyCH4IV ACGT 3 cut(s) 36, 90, 930
HpyCH4V TGCA 6 cut(s) 503, 509, 679, 716, 782, 1130
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 319, 356, 401, 992, 998
HpyF3I CTNAG 5 cut(s) 8, 125, 426, 751, 1016
HpySE526I ACGT 3 cut(s) 36, 90, 930
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 3 cut(s) 119, 679, 1115
HspAI GCGC 2 cut(s) 609, 667
KflI GGGWCCC 1 cut(s) 152
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
KspI CCGCGG 1 cut(s) 272
Kzo9I GATC 6 cut(s) 4, 18, 48, 132, 237, 740
LmnI GCTCC 4 cut(s) 149, 163, 524, 588
Lsp1109I GCAGC 8 cut(s) 48, 178, 181, 379, 391, 979, 998, 1001
LweI GCATC 3 cut(s) 23, 557, 685
MaeI CTAG 1 cut(s) 438
MaeII ACGT 3 cut(s) 36, 90, 930
MaeIII GTNAC 2 cut(s) 252, 788
MalI GATC 6 cut(s) 6, 20, 50, 134, 239, 742
MbiI CCGCTC 1 cut(s) 362
MboI GATC 6 cut(s) 4, 18, 48, 132, 237, 740
MboII GAAGA 9 cut(s) 67, 232, 452, 668, 680, 755, 983, 1057, 1091
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 228, 1119
MluCI AATT 2 cut(s) 415, 838
MlyI GAGTC 2 cut(s) 572, 899
Mph1103I ATGCAT 1 cut(s) 511
MroNI GCCGGC 1 cut(s) 197
MseI TTAA 2 cut(s) 450, 605
MslI CAYNNNNRTG 2 cut(s) 116, 296
MspA1I CMGCKG 5 cut(s) 106, 140, 194, 271, 992
MspI CCGG 2 cut(s) 198, 261
MspR9I CCNGG 1 cut(s) 490
MvaI CCWGG 1 cut(s) 490
MvnI CGCG 2 cut(s) 23, 271
MwoI GCNNNNNNNGC 6 cut(s) 20, 319, 356, 401, 992, 998
NaeI GCCGGC 1 cut(s) 199
NdeII GATC 6 cut(s) 4, 18, 48, 132, 237, 740
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 3 cut(s) 119, 679, 1115
NlaIV GGNNCC 4 cut(s) 145, 153, 154, 1093
NmuCI GTSAC 2 cut(s) 252, 788
NruI TCGCGA 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 1 cut(s) 1115
PdiI GCCGGC 1 cut(s) 199
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 2 cut(s) 571, 899
PpsI GAGTC 2 cut(s) 571, 899
Ppu21I YACGTR 1 cut(s) 931
PpuMI RGGWCCY 1 cut(s) 152
PshAI GACNNNNGTC 1 cut(s) 35
PsiI TTATAA 1 cut(s) 1010
Psp124BI GAGCTC 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 488
PspEI GGTNACC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 4 cut(s) 145, 153, 154, 1093
PspPI GGNCC 2 cut(s) 152, 266
PspPPI RGGWCCY 1 cut(s) 152
PsrI GAACNNNNNNTAC 4 cut(s) 80, 112, 335, 367
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 1 cut(s) 4
PvuI CGATCG 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 992
RruI TCGCGA 1 cut(s) 23
RsaI GTAC 1 cut(s) 979
RsaNI GTAC 1 cut(s) 978
RseI CAYNNNNRTG 2 cut(s) 116, 296
Rsr2I CGGWCCG 1 cut(s) 266
RsrII CGGWCCG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 228
SacII CCGCGG 1 cut(s) 272
SaqAI TTAA 2 cut(s) 450, 605
Sau3AI GATC 6 cut(s) 4, 18, 48, 132, 237, 740
Sau96I GGNCC 2 cut(s) 152, 266
SchI GAGTC 2 cut(s) 572, 899
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 2 cut(s) 228, 1119
SfaNI GCATC 3 cut(s) 23, 557, 685
Sfr303I CCGCGG 1 cut(s) 272
SgrAI CRCCGGYG 1 cut(s) 260
SgrBI CCGCGG 1 cut(s) 272
SinI GGWCC 2 cut(s) 152, 266
SmiMI CAYNNNNRTG 2 cut(s) 116, 296
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SnaBI TACGTA 1 cut(s) 931
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 2 cut(s) 415, 838
SsiI CCGC 8 cut(s) 104, 138, 192, 264, 269, 271, 360, 664
SspMI CTAG 1 cut(s) 438
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 488
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 1096
TaiI ACGT 3 cut(s) 39, 93, 933
TaqI TCGA 3 cut(s) 17, 375, 473
TaqII GACCGA 2 cut(s) 47, 86
TasI AATT 2 cut(s) 415, 838
TauI GCSGC 4 cut(s) 106, 140, 362, 667
Tru1I TTAA 2 cut(s) 450, 605
Tru9I TTAA 2 cut(s) 450, 605
TscAI CASTG 3 cut(s) 352, 789, 880
TseFI GTSAC 2 cut(s) 252, 788
TseI GCWGC 8 cut(s) 61, 166, 194, 392, 404, 986, 989, 992
Tsp45I GTSAC 2 cut(s) 252, 788
TspDTI ATGAA 5 cut(s) 549, 786, 946, 984, 1093
TspRI CASTG 3 cut(s) 352, 789, 880
VpaK11BI GGWCC 2 cut(s) 152, 266
XapI RAATTY 1 cut(s) 415
XceI RCATGY 1 cut(s) 1115
XcmI CCANNNNNNNNNTGG 2 cut(s) 581, 1042
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 438
ZraI GACGTC 1 cut(s) 37
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.