AT2G35580

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
14933828 .. 14935482
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35580.1

Sequence Viewer

Length: 1125 bp
ATGGACCTGGAAGAATCAATAGAGAAGCAATATAAGGCCATGATGGACCTGAAAGAATCAGTAGGGAATCAAAACGACATTGTTCTGAGGTTGACAGCACCGTTAATCAACGTCATCCTCAGTATTATCGCCGCCAGTTCTCCCGGAGACACAGACACCGCAGACAAGATTGTCTCTTTACTTCAGGCTTCTTCAACCGATAAGCTTCACGCTGTATCCTCCGAGATCGTCACCACCGTCCTCGCCGACAGCACCGCGAGTGGCGGCCCGACGATATCGGCAGCGAATGGCTTGTGGATCGAAAAGACTCTCAATGTGGAACCTTCTTTCAAGGATCTCTTGCTGAATTCGTACAAAGCTGCTTTCAATCGAGTTGACTTTCGCACCAAGGCTGATGAAGTGAATAGAGAGGTGAATTCATGGGTTGAAAAGCAGACAAATGGACTCATCACTAATCTTCTTCCATCAAACCCTAAATCTGCTCCTTTGACTGATCACATATTTGCTAATGCCTTGTTCTTCAACGGAAGATGGGATAGTCAATTCGATCCATCTCTAACAAAAGATTCCGACTTTCACCTTCTTGATGGAACCAAAGTACGTGTGCCCTTCATGACTGGTGCCTCCTGCAGATACACACATGTTTACGAAGGTTTCAAAGTCATCAATCTACAGTACAGAAGAGGACGCGAAGACAGTCGTAGTTTCTCAATGCAAATCTATCTCCCTGATGAGAAAGATGGGTTGCCTTCAATGTTGGAGAGATTAGCTTCTACTCGTGGATTCTTGAAGGACAACGAGGTCCTTCCTAGCCACTCGGCGGTTATCAAAGAACTCAAGATTCCAAGGTTTAAATTTGATTTTGCTTTCGAAGCCTCGGAAGCTCTCAAGGGTTTTGGTTTGGTGGTGCCATTGTCCATGATCATGCACAAGTCTTGTATCGAGGTCGATGAAGTGGGATCGAAAGCTGCAGCTGCTGCCGCATTCAGAGGAATTGGTTGTCGACGTCCTCCGCCAGAGAAGCATGACTTCGTGGCTGATCATCCTTTTCTCTTCATCGTCAAAGAGTACAGAAGCGGACTTGTTTTGTTCCTTGGTCAAGTCATGGATCCTTCTAAGCATTAA

Protein Analysis

374

Amino Acids

41.51

Weight (kDa)

6.03

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 36 - 371 5.8e-66 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 170, 800
AatII GACGTC 1 cut(s) 1009
AccB1I GGYRCC 2 cut(s) 620, 907
AccI GTMKAC 1 cut(s) 1003
AccII CGCG 2 cut(s) 257, 690
AciI CCGC 8 cut(s) 132, 159, 255, 264, 821, 981, 1013, 1077
AclWI GGATC 6 cut(s) 305, 342, 542, 967, 1103, 1116
AcsI RAATTY 3 cut(s) 346, 415, 854
AcuI CTGAAG 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 1006
AfaI GTAC 4 cut(s) 353, 600, 677, 1070
AfiI CCNNNNNNNGG 1 cut(s) 820
AflIII ACRYGT 2 cut(s) 601, 640
AgsI TTSAA 8 cut(s) 195, 331, 367, 428, 523, 658, 753, 790
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 6 cut(s) 205, 359, 770, 884, 968, 974
AluI AGCT 6 cut(s) 205, 359, 770, 884, 968, 974
Alw26I GTCTC 2 cut(s) 141, 178
AlwI GGATC 6 cut(s) 305, 342, 542, 967, 1103, 1116
AlwNI CAGNNNCTG 1 cut(s) 977
AoxI GGCC 2 cut(s) 36, 265
ApeKI GCWGC 6 cut(s) 281, 359, 968, 971, 974, 977
ApoI RAATTY 3 cut(s) 346, 415, 854
AspS9I GGNCC 4 cut(s) 4, 46, 266, 802
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 223, 424, 569
AsuII TTCGAA 1 cut(s) 870
AvaII GGWCC 3 cut(s) 4, 46, 802
BaeGI GKGCMC 1 cut(s) 609
BamHI GGATCC 1 cut(s) 1108
BanI GGYRCC 2 cut(s) 620, 907
BauI CACGAG 1 cut(s) 777
BbsI GAAGAC 1 cut(s) 699
BbvI GCAGC 6 cut(s) 293, 346, 955, 961, 964, 983
BccI CCATC 6 cut(s) 37, 472, 525, 559, 581, 734
BciT130I CCWGG 1 cut(s) 8
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 3 cut(s) 493, 921, 1039
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 141, 178
BfaI CTAG 1 cut(s) 810
BfmI CTRYAG 3 cut(s) 628, 671, 969
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 9 cut(s) 132, 265, 282, 360, 969, 972, 975, 978, 981
BlsI GCNGC 9 cut(s) 133, 266, 283, 361, 970, 973, 976, 979, 982
Bme1390I CCNGG 2 cut(s) 8, 144
Bme18I GGWCC 3 cut(s) 4, 46, 802
BmgT120I GGNCC 4 cut(s) 4, 46, 266, 802
BmiI GGNNCC 5 cut(s) 321, 592, 622, 909, 1110
BmrFI CCNGG 2 cut(s) 8, 144
BpiI GAAGAC 1 cut(s) 699
Bpu14I TTCGAA 1 cut(s) 870
BpuEI CTTGAG 2 cut(s) 821, 872
BpuMI CCSGG 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 602
BsaHI GRCGYC 1 cut(s) 1006
BsaJI CCNNGG 4 cut(s) 387, 845, 876, 1093
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse1I ACTGG 2 cut(s) 135, 622
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 4 cut(s) 387, 845, 876, 1093
BseGI GGATG 2 cut(s) 114, 1042
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMII CTCAG 2 cut(s) 77, 133
BseNI ACTGG 2 cut(s) 135, 622
BseSI GKGCMC 1 cut(s) 609
BseXI GCAGC 6 cut(s) 293, 346, 955, 961, 964, 983
Bsh1236I CGCG 2 cut(s) 257, 690
BshFI GGCC 2 cut(s) 38, 267
BshNI GGYRCC 2 cut(s) 620, 907
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 820
BsmAI GTCTC 2 cut(s) 141, 178
BsmI GAATGC 1 cut(s) 983
BsnI GGCC 2 cut(s) 38, 267
Bsp119I TTCGAA 1 cut(s) 870
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 9 cut(s) 225, 297, 334, 493, 547, 921, 959, 1039, 1108
BspACI CCGC 8 cut(s) 132, 159, 255, 264, 821, 981, 1013, 1077
BspANI GGCC 2 cut(s) 38, 267
BspCNI CTCAG 2 cut(s) 78, 132
BspFNI CGCG 2 cut(s) 257, 690
BspHI TCATGA 1 cut(s) 612
BspLI GGNNCC 5 cut(s) 321, 592, 622, 909, 1110
BspMAI CTGCAG 2 cut(s) 632, 973
BspPI GGATC 6 cut(s) 305, 342, 542, 967, 1103, 1116
BspT104I TTCGAA 1 cut(s) 870
BspT107I GGYRCC 2 cut(s) 620, 907
BsrI ACTGG 2 cut(s) 135, 622
BssECI CCNNGG 4 cut(s) 387, 845, 876, 1093
BssMI GATC 9 cut(s) 225, 297, 334, 493, 547, 921, 959, 1039, 1108
BssNI GRCGYC 1 cut(s) 1006
BssSI CACGAG 1 cut(s) 777
BssT1I CCWWGG 3 cut(s) 387, 845, 1093
Bst2BI CACGAG 1 cut(s) 777
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 4 cut(s) 102, 238, 675, 698
Bst6I CTCTTC 2 cut(s) 676, 1058
BstACI GRCGYC 1 cut(s) 1006
BstAPI GCANNNNNTGC 1 cut(s) 977
BstBAI YACGTR 1 cut(s) 602
BstBI TTCGAA 1 cut(s) 870
BstDEI CTNAG 3 cut(s) 86, 119, 1116
BstF5I GGATG 2 cut(s) 114, 1042
BstFNI CGCG 2 cut(s) 257, 690
BstKTI GATC 9 cut(s) 228, 300, 337, 496, 550, 924, 962, 1042, 1111
BstMAI GTCTC 2 cut(s) 141, 178
BstMBI GATC 9 cut(s) 225, 297, 334, 493, 547, 921, 959, 1039, 1108
BstMWI GCNNNNNNNGC 6 cut(s) 872, 881, 974, 977, 980, 1021
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 2 cut(s) 6, 142
BstSFI CTRYAG 3 cut(s) 628, 671, 969
BstSLI GKGCMC 1 cut(s) 609
BstUI CGCG 2 cut(s) 257, 690
BstV1I GCAGC 6 cut(s) 293, 346, 955, 961, 964, 983
BstV2I GAAGAC 1 cut(s) 699
BstX2I RGATCY 2 cut(s) 334, 1108
BstYI RGATCY 2 cut(s) 334, 1108
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 2 cut(s) 38, 267
BtsCI GGATG 2 cut(s) 114, 1042
CaiI CAGNNNCTG 1 cut(s) 977
CciI TCATGA 1 cut(s) 612
Cfr13I GGNCC 4 cut(s) 4, 46, 266, 802
CseI GACGC 1 cut(s) 696
Csp6I GTAC 4 cut(s) 352, 599, 676, 1069
CviAII CATG 8 cut(s) 40, 420, 613, 641, 919, 925, 1025, 1105
CviQI GTAC 4 cut(s) 352, 599, 676, 1069
DdeI CTNAG 3 cut(s) 86, 119, 1116
DpnI GATC 9 cut(s) 227, 299, 336, 495, 549, 923, 961, 1041, 1110
DpnII GATC 9 cut(s) 225, 297, 334, 493, 547, 921, 959, 1039, 1108
DraI TTTAAA 1 cut(s) 853
DrdI GACNNNNNNGTC 2 cut(s) 170, 800
DseDI GACNNNNNNGTC 2 cut(s) 170, 800
Eam1104I CTCTTC 2 cut(s) 676, 1058
EarI CTCTTC 2 cut(s) 676, 1058
EciI GGCGGA 1 cut(s) 1002
Eco130I CCWWGG 3 cut(s) 387, 845, 1093
Eco32I GATATC 1 cut(s) 276
Eco47I GGWCC 3 cut(s) 4, 46, 802
Eco57I CTGAAG 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 802
EcoRI GAATTC 2 cut(s) 346, 415
EcoRII CCWGG 1 cut(s) 6
EcoRV GATATC 1 cut(s) 276
EcoT14I CCWWGG 3 cut(s) 387, 845, 1093
ErhI CCWWGG 3 cut(s) 387, 845, 1093
FaeI CATG 8 cut(s) 43, 423, 616, 644, 922, 928, 1028, 1108
FalI AAGNNNNNCTT 4 cut(s) 323, 355, 1013, 1045
FatI CATG 8 cut(s) 39, 419, 612, 640, 918, 924, 1024, 1104
FbaI TGATCA 3 cut(s) 493, 921, 1039
FblI GTMKAC 1 cut(s) 1003
Fnu4HI GCNGC 9 cut(s) 132, 265, 282, 360, 969, 972, 975, 978, 981
FokI GGATG 2 cut(s) 101, 1029
Fsp4HI GCNGC 9 cut(s) 132, 265, 282, 360, 969, 972, 975, 978, 981
FspBI CTAG 1 cut(s) 810
GluI GCNGC 9 cut(s) 132, 265, 282, 360, 969, 972, 975, 978, 981
HaeIII GGCC 2 cut(s) 38, 267
HapII CCGG 1 cut(s) 144
HgaI GACGC 1 cut(s) 696
Hin1I GRCGYC 1 cut(s) 1006
Hin1II CATG 8 cut(s) 43, 423, 616, 644, 922, 928, 1028, 1108
HincII GTYRAC 3 cut(s) 93, 376, 1004
HindII GTYRAC 3 cut(s) 93, 376, 1004
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 8 cut(s) 14, 56, 67, 307, 444, 566, 783, 841
HpaII CCGG 1 cut(s) 144
HphI GGTGA 3 cut(s) 223, 424, 569
Hpy166II GTNNAC 4 cut(s) 93, 376, 646, 1004
Hpy188I TCNGA 5 cut(s) 87, 223, 571, 880, 989
Hpy188III TCNNGA 4 cut(s) 584, 613, 787, 838
Hpy8I GTNNAC 4 cut(s) 93, 376, 646, 1004
Hpy99I CGWCG 2 cut(s) 274, 1008
HpyAV CCTTC 8 cut(s) 333, 590, 619, 644, 759, 784, 815, 1122
HpyCH4III ACNGT 4 cut(s) 102, 238, 675, 698
HpyCH4IV ACGT 3 cut(s) 111, 601, 1006
HpyCH4V TGCA 4 cut(s) 630, 715, 928, 971
HpyF10VI GCNNNNNNNGC 6 cut(s) 872, 881, 974, 977, 980, 1021
HpyF3I CTNAG 3 cut(s) 86, 119, 1116
HpySE526I ACGT 3 cut(s) 111, 601, 1006
Hsp92I GRCGYC 1 cut(s) 1006
Hsp92II CATG 8 cut(s) 43, 423, 616, 644, 922, 928, 1028, 1108
Ksp22I TGATCA 3 cut(s) 493, 921, 1039
Kzo9I GATC 9 cut(s) 225, 297, 334, 493, 547, 921, 959, 1039, 1108
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 9 cut(s) 20, 62, 148, 157, 170, 603, 640, 741, 1029
Lsp1109I GCAGC 6 cut(s) 293, 346, 955, 961, 964, 983
MaeI CTAG 1 cut(s) 810
MaeII ACGT 3 cut(s) 111, 601, 1006
MaeIII GTNAC 1 cut(s) 229
MalI GATC 9 cut(s) 227, 299, 336, 495, 549, 923, 961, 1041, 1110
MboI GATC 9 cut(s) 225, 297, 334, 493, 547, 921, 959, 1039, 1108
MboII GAAGA 9 cut(s) 23, 183, 449, 452, 511, 540, 693, 704, 1045
MflI RGATCY 2 cut(s) 334, 1108
MhlI GDGCHC 1 cut(s) 609
MluCI AATT 5 cut(s) 346, 415, 542, 854, 993
MlyI GAGTC 2 cut(s) 301, 438
MmeI TCCRAC 2 cut(s) 594, 738
MseI TTAA 3 cut(s) 104, 852, 1123
MslI CAYNNNNRTG 1 cut(s) 923
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 8, 144
Mva1269I GAATGC 1 cut(s) 983
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 2 cut(s) 257, 690
MwoI GCNNNNNNNGC 6 cut(s) 872, 881, 974, 977, 980, 1021
NciI CCSGG 1 cut(s) 144
NdeII GATC 9 cut(s) 225, 297, 334, 493, 547, 921, 959, 1039, 1108
NlaIII CATG 8 cut(s) 43, 423, 616, 644, 922, 928, 1028, 1108
NlaIV GGNNCC 5 cut(s) 321, 592, 622, 909, 1110
NmeAIII GCCGAG 1 cut(s) 797
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 644
NspV TTCGAA 1 cut(s) 870
PagI TCATGA 1 cut(s) 612
PciI ACATGT 1 cut(s) 640
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 983
PfeI GAWTC 6 cut(s) 14, 56, 67, 566, 783, 841
PfoI TCCNGGA 1 cut(s) 142
PkrI GCNGC 9 cut(s) 133, 266, 283, 361, 970, 973, 976, 979, 982
PleI GAGTC 2 cut(s) 301, 438
PpsI GAGTC 2 cut(s) 301, 438
Ppu21I YACGTR 1 cut(s) 602
PpuMI RGGWCCY 1 cut(s) 802
PscI ACATGT 1 cut(s) 640
Psp5II RGGWCCY 1 cut(s) 802
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 5 cut(s) 321, 592, 622, 909, 1110
PspPI GGNCC 4 cut(s) 4, 46, 266, 802
PspPPI RGGWCCY 1 cut(s) 802
PstI CTGCAG 2 cut(s) 632, 973
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 2 cut(s) 334, 1108
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 4 cut(s) 353, 600, 677, 1070
RsaNI GTAC 4 cut(s) 352, 599, 676, 1069
RseI CAYNNNNRTG 1 cut(s) 923
SalI GTCGAC 1 cut(s) 1002
SaqAI TTAA 3 cut(s) 104, 852, 1123
SatI GCNGC 9 cut(s) 132, 265, 282, 360, 969, 972, 975, 978, 981
Sau3AI GATC 9 cut(s) 225, 297, 334, 493, 547, 921, 959, 1039, 1108
Sau96I GGNCC 4 cut(s) 4, 46, 266, 802
SchI GAGTC 2 cut(s) 301, 438
ScrFI CCNGG 2 cut(s) 8, 144
SduI GDGCHC 1 cut(s) 609
SfcI CTRYAG 3 cut(s) 628, 671, 969
SfuI TTCGAA 1 cut(s) 870
SinI GGWCC 3 cut(s) 4, 46, 802
SmiMI CAYNNNNRTG 1 cut(s) 923
SmlI CTYRAG 2 cut(s) 836, 887
SmoI CTYRAG 2 cut(s) 836, 887
Sse9I AATT 5 cut(s) 346, 415, 542, 854, 993
SsiI CCGC 8 cut(s) 132, 159, 255, 264, 821, 981, 1013, 1077
SspMI CTAG 1 cut(s) 810
StyD4I CCNGG 2 cut(s) 6, 142
StyI CCWWGG 3 cut(s) 387, 845, 1093
TaaI ACNGT 4 cut(s) 102, 238, 675, 698
TaiI ACGT 3 cut(s) 114, 604, 1009
TaqI TCGA 8 cut(s) 300, 370, 546, 870, 942, 948, 962, 1003
TasI AATT 5 cut(s) 346, 415, 542, 854, 993
TatI WGTACW 2 cut(s) 675, 1068
TauI GCSGC 3 cut(s) 134, 267, 983
TfiI GAWTC 6 cut(s) 14, 56, 67, 566, 783, 841
Tru1I TTAA 3 cut(s) 104, 852, 1123
Tru9I TTAA 3 cut(s) 104, 852, 1123
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 6 cut(s) 281, 359, 968, 971, 974, 977
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 5 cut(s) 408, 411, 601, 966, 1045
TspGWI ACGGA 1 cut(s) 540
VpaK11BI GGWCC 3 cut(s) 4, 46, 802
XapI RAATTY 3 cut(s) 346, 415, 854
XceI RCATGY 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 1003
XspI CTAG 1 cut(s) 810
ZraI GACGTC 1 cut(s) 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.