Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002697

Physical Location & Seq

Genomic Coordinates Reverse (-)

23750764 .. 23751671

Gene Structure 908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACGAAAGACCGAGACTTTCACCTTATCAATGGGACATCAGTTTCTGTGTCTCTCATGAGCAGCTATAAGGACCAATACATAGAGGCTTATGATGGTTTCAAGGTCCTAAAGCTCCCATTTCGACAAGGTAATGATACCAGTCGAAACTTCTCTATGCATTTCTATCTCCCTGATGAGAAAGATGGTTTGGATAATCTTGTGGAGAAAATGGCATCAAGTGTTGGTTTCTTGGATAGTCATATTCCGAGTCAAAAAGTTAAAGTTGGTGAATTCGGAATCCCAAAGTTTAAGATCGAATTCGGATTCTCGGCTTCAAGGGCTTTCAATAGATTGGGATTGGATGAAATGGCTTTGTACCAAAAAGCTTGTGTTGAGATTGATGAAGAAGGTGCTGAAGCTATTGCCGCAACTGCTGTTGTTGGAGGCTTTGGATGTGCTTTTGTTAAGAGGATAGATTTTGTTGCTGATCATCCATTTCTTTTCATGATTAGAGAAGACAAAACCGGAACAGTTTTGTTCGTTGGTCAGATCTTTGATCCTTCTTATTCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034641 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046483 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0098772 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko05146 map00190 map01100 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

185

Amino Acids

20.66

Weight (kDa)

5.21

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	2 - 181	1.2e-32	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47710 AT1G47710 AT1G51330 AT1G62160 AT1G62170 AT1G62170 AT1G63280 AT1G64010 AT1G64010 AT1G64030 AT2G14540 AT2G25240 AT2G26390 AT2G35580 AT3G45220
fragaria_vesca	FvH4_2g40700
malus_domestica	MD08G1040600.v1.1 MD08G1041200.v1.1 MD08G1041300.v1.1 MD08G1041500.v1.1 MD08G1041600.v1.1 MD14G1097300.v1.1 MD15G1035000.v1.1 MD15G1286900.v1.1
prunus_persica	Prupe.1G389200_v2.0.a1 Prupe.1G389300_v2.0.a1 Prupe.3G141200_v2.0.a1
pyrus_communis	pycom08g03320 pycom08g03330 pycom08g03340 pycom08g03360 pycom15g03220
rosa_chinensis	RchiOBHm_Chr6g0299901
rosa_laevigata	RLG00000011377
rosa_multiflora	Rmu_ssc0000158.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168290
rosa_rugosa	Rorug06G0293100
rosa_samantha	Rh4AG219100
rosa_wichuraiana	Rw6G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	1 cut(s)	533
AcsI	RAATTY	2 cut(s)	272, 299
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	103, 318, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	4 cut(s)	66, 115, 368, 401
AluI	AGCT	4 cut(s)	66, 115, 368, 401
Alw26I	GTCTC	2 cut(s)	9, 57
AlwI	GGATC	1 cut(s)	533
AlwNI	CAGNNNCTG	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	2 cut(s)	272, 299
AspS9I	GGNCC	2 cut(s)	73, 106
AsuHPI	GGTGA	2 cut(s)	14, 281
AvaII	GGWCC	2 cut(s)	73, 106
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	2 cut(s)	89, 179
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	9, 57
BglII	AGATCT	1 cut(s)	531
BisI	GCNGC	2 cut(s)	64, 408
BlsI	GCNGC	2 cut(s)	65, 409
Bme18I	GGWCC	2 cut(s)	73, 106
BmgT120I	GGNCC	2 cut(s)	73, 106
BmsI	GCATC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	504
BsaWI	WCCGGW	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	141
BseGI	GGATG	3 cut(s)	349, 440, 472
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	9, 57
BsmFI	GGGAC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	294, 469, 531, 538
BspACI	CCGC	1 cut(s)	408
BspHI	TCATGA	2 cut(s)	57, 486
BspPI	GGATC	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	141
BssMI	GATC	4 cut(s)	294, 469, 531, 538
Bst4CI	ACNGT	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	555
BstF5I	GGATG	3 cut(s)	349, 440, 472
BstKTI	GATC	4 cut(s)	297, 472, 534, 541
BstMAI	GTCTC	2 cut(s)	9, 57
BstMBI	GATC	4 cut(s)	294, 469, 531, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 407, 413
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BtsCI	GGATG	3 cut(s)	349, 440, 472
CaiI	CAGNNNCTG	1 cut(s)	47
CciI	TCATGA	2 cut(s)	57, 486
Cfr13I	GGNCC	2 cut(s)	73, 106
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	58, 487
CviJI	RGCY	9 cut(s)	66, 89, 115, 314, 323, 353, 368, 401, 429
CviKI_1	RGCY	9 cut(s)	66, 89, 115, 314, 323, 353, 368, 401, 429
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	555
DpnI	GATC	4 cut(s)	296, 471, 533, 540
DpnII	GATC	4 cut(s)	294, 469, 531, 538
Eco47I	GGWCC	2 cut(s)	73, 106
Eco57I	CTGAAG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	2 cut(s)	272, 299
EcoT22I	ATGCAT	1 cut(s)	162
FaeI	CATG	2 cut(s)	61, 490
FaiI	YATR	7 cut(s)	59, 69, 83, 93, 158, 243, 488
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	57, 486
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	64, 408
FokI	GGATG	3 cut(s)	356, 447, 459
Fsp4HI	GCNGC	2 cut(s)	64, 408
GluI	GCNGC	2 cut(s)	64, 408
HapII	CCGG	1 cut(s)	507
Hin1II	CATG	2 cut(s)	61, 490
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	3 cut(s)	250, 279, 306
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	2 cut(s)	14, 281
Hpy188I	TCNGA	4 cut(s)	249, 278, 305, 531
Hpy188III	TCNNGA	2 cut(s)	58, 487
HpyAV	CCTTC	2 cut(s)	383, 552
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 407, 413
HpyF3I	CTNAG	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	61, 490
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	294, 469, 531, 538
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	3 cut(s)	154, 186, 520
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	224
MalI	GATC	4 cut(s)	296, 471, 533, 540
MboI	GATC	4 cut(s)	294, 469, 531, 538
MboII	GAAGA	3 cut(s)	398, 509, 543
MflI	RGATCY	1 cut(s)	531
MluCI	AATT	2 cut(s)	272, 299
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	3 cut(s)	79, 419, 444
Mph1103I	ATGCAT	1 cut(s)	162
MseI	TTAA	3 cut(s)	261, 291, 447
MspI	CCGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	320, 407, 413
NdeII	GATC	4 cut(s)	294, 469, 531, 538
NlaIII	CATG	2 cut(s)	61, 490
NmeAIII	GCCGAG	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	162
PagI	TCATGA	2 cut(s)	57, 486
PfeI	GAWTC	2 cut(s)	279, 306
PkrI	GCNGC	2 cut(s)	65, 409
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	73, 106
PspPPI	RGGWCCY	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SaqAI	TTAA	3 cut(s)	261, 291, 447
SatI	GCNGC	2 cut(s)	64, 408
Sau3AI	GATC	4 cut(s)	294, 469, 531, 538
Sau96I	GGNCC	2 cut(s)	73, 106
SchI	GAGTC	1 cut(s)	259
SetI	ASST	8 cut(s)	27, 68, 108, 117, 133, 370, 394, 403
SfaNI	GCATC	1 cut(s)	224
SinI	GGWCC	2 cut(s)	73, 106
Sse9I	AATT	2 cut(s)	272, 299
SsiI	CCGC	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	514
TaqI	TCGA	3 cut(s)	124, 145, 297
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	272, 299
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	2 cut(s)	279, 306
Tru1I	TTAA	3 cut(s)	261, 291, 447
Tru9I	TTAA	3 cut(s)	261, 291, 447
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	3 cut(s)	360, 399, 475
VpaK11BI	GGWCC	2 cut(s)	73, 106
XapI	RAATTY	2 cut(s)	272, 299
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.