Rmu_ssc0000158.1_g000016

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000158.1
Physical Location & Seq
Reverse (-)
84015 .. 85750
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000158.1_g000016.1.cds

Sequence Viewer

Length: 1167 bp
atggatctcagggcatcgatcgcgaaccagaccgacgtcggtttggggatcacgaagaagctgcttcagaccgaaggcaaggacaagaacgtggtctactcgccgctgtccatccacgtggtgctgagcctgatcgccgctggctccaagggtcccacacaggagcagcttctctctttcctcaagtccaccgttgccggcgacctcaactccttcgcctccgagctcgtcgccgtgatcttcgccgacgggtcacccaccggcggtccgcggttgtcgtttgccaatggcatttgggtggacaagccgctgcctttcaagccttcgttcaaggaggtggtgaacactgcttacaaggccgctctgaaccaagtcgatttccagaccaaagctgctgaagtggctgctggagtgaatttgtgggctgagaaggagactagtggccttattaaagaggttcttcctgttgggtcgattgacagctcaaccaggctcatctttgcaaatgcattatacttcaagggagcttggaatgaaaagtttgaggcatcattcacgaaagagtcagacttccaccttcttgatgggagcaaagttcaggcaccgtttatgaccagcaagaagaagcagtttttaagcgcctataacgatttcaaagtcttggggcttccatacaaacaaggggaagacaagcggcgcttctccatgcacatctttcttccagatgccaaagatgggctgactgcattgattgagaaagttggttctggatcagggttcttagagcgacatcttccctatgaacaagttgcagtgagtgacttcaaactcccaaagttcaagatatctttcggttttgaagcttccaatttactgaagggtttaggactggtcttgcctttcagtggtgaaggaggtttgacagagatggtggactcacctgtgggtcagaacctatacgtatccagcatattccacaaatccttcattgaagtaaatgaagaaggtacagaagcagcagctgcctctgctggtgttataaaactgaggggtatgcctaaaaccatagactttgtggctgaccacccattcctcttcctcatcaaagaagaaatgactggaaccgtgctgttcatcgggcatgtgctcaatccccttgcagactga

Protein Analysis

388

Amino Acids

42.08

Weight (kDa)

6.21

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1040
AatII GACGTC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 601
AccBSI CCGCTC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 96
AccII CGCG 2 cut(s) 23, 271
AciI CCGC 8 cut(s) 104, 138, 264, 269, 271, 308, 360, 694
AclWI GGATC 3 cut(s) 12, 56, 778
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 3 cut(s) 50, 417, 896
AcvI CACGTG 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 1 cut(s) 1009
AfiI CCNNNNNNNGG 3 cut(s) 263, 735, 905
AgsI TTSAA 8 cut(s) 319, 331, 520, 655, 826, 841, 860, 992
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 8 cut(s) 61, 169, 226, 392, 483, 527, 863, 1022
AluI AGCT 8 cut(s) 61, 169, 226, 392, 483, 527, 863, 1022
Alw21I GWGCWC 2 cut(s) 228, 1149
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 3 cut(s) 12, 56, 778
AlwNI CAGNNNCTG 1 cut(s) 1022
AoxI GGCC 2 cut(s) 357, 442
ApeKI GCWGC 8 cut(s) 61, 166, 310, 392, 404, 1016, 1019, 1022
ApoI RAATTY 1 cut(s) 415
AspLEI GCGC 2 cut(s) 641, 699
AspS9I GGNCC 2 cut(s) 152, 266
AsuHPI GGTGA 4 cut(s) 246, 352, 920, 930
AvaII GGWCC 2 cut(s) 152, 266
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 228
BbrPI CACGTG 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 693
Bbv12I GWGCWC 2 cut(s) 228, 1149
BbvI GCAGC 8 cut(s) 48, 178, 297, 379, 391, 1009, 1028, 1031
BccI CCATC 4 cut(s) 119, 578, 728, 922
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 1 cut(s) 490
BciVI GTATCC 1 cut(s) 973
BcoDI GTCTC 1 cut(s) 428
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 1 cut(s) 438
BfoI RGCGCY 2 cut(s) 642, 700
BfuI GTATCC 1 cut(s) 973
BlpI GCTNAGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 490
Bme18I GGWCC 2 cut(s) 152, 266
BmgT120I GGNCC 2 cut(s) 152, 266
BmiI GGNNCC 5 cut(s) 145, 153, 154, 603, 1123
BmrFI CCNGG 1 cut(s) 490
BmsI GCATC 3 cut(s) 23, 557, 715
BoxI GACNNNNGTC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 693
BpmI CTGGAG 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 17
BsaAI YACGTR 2 cut(s) 118, 961
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 147, 269
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 263, 735, 905
Bse118I RCCGGY 2 cut(s) 197, 260
Bse1I ACTGG 2 cut(s) 894, 1123
BseBI CCWGG 1 cut(s) 490
BseCI ATCGAT 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 147, 269
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 263, 735, 905
BseMII CTCAG 4 cut(s) 22, 116, 417, 1037
BseNI ACTGG 2 cut(s) 894, 1123
BseXI GCAGC 8 cut(s) 48, 178, 297, 379, 391, 1009, 1028, 1031
Bsh1236I CGCG 2 cut(s) 23, 271
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 359, 444
BshNI GGYRCC 1 cut(s) 601
BshVI ATCGAT 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 228, 1149
BsiSI CCGG 2 cut(s) 198, 261
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 3 cut(s) 263, 735, 905
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 2 cut(s) 359, 444
Bsp1286I GDGCHC 2 cut(s) 228, 1149
Bsp143I GATC 6 cut(s) 4, 18, 48, 132, 237, 770
Bsp1720I GCTNAGC 1 cut(s) 125
Bsp68I TCGCGA 1 cut(s) 23
BspACI CCGC 8 cut(s) 104, 138, 264, 269, 271, 308, 360, 694
BspANI GGCC 2 cut(s) 359, 444
BspCNI CTCAG 4 cut(s) 21, 117, 418, 1038
BspDI ATCGAT 1 cut(s) 17
BspFNI CGCG 2 cut(s) 23, 271
BspLI GGNNCC 5 cut(s) 145, 153, 154, 603, 1123
BspPI GGATC 3 cut(s) 12, 56, 778
BspT107I GGYRCC 1 cut(s) 601
BsrBI CCGCTC 1 cut(s) 362
BsrFI RCCGGY 2 cut(s) 197, 260
BsrI ACTGG 2 cut(s) 894, 1123
BssAI RCCGGY 2 cut(s) 197, 260
BssECI CCNNGG 2 cut(s) 147, 269
BssMI GATC 6 cut(s) 4, 18, 48, 132, 237, 770
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 3 cut(s) 193, 606, 1126
Bst6I CTCTTC 1 cut(s) 1100
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 1022
BstBAI YACGTR 2 cut(s) 118, 961
BstC8I GCNNGC 2 cut(s) 142, 199
BstDEI CTNAG 5 cut(s) 8, 125, 426, 781, 1046
BstDSI CCRYGG 1 cut(s) 269
BstEII GGTNACC 1 cut(s) 252
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 23, 271
BstH2I RGCGCY 2 cut(s) 642, 700
BstHHI GCGC 2 cut(s) 641, 699
BstKTI GATC 6 cut(s) 7, 21, 51, 135, 240, 773
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 6 cut(s) 4, 18, 48, 132, 237, 770
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 6 cut(s) 20, 319, 356, 401, 1022, 1028
BstNI CCWGG 1 cut(s) 490
BstNSI RCATGY 1 cut(s) 1145
BstPAI GACNNNNGTC 1 cut(s) 35
BstPI GGTNACC 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 488
BstSNI TACGTA 1 cut(s) 961
BstUI CGCG 2 cut(s) 23, 271
BstV1I GCAGC 8 cut(s) 48, 178, 297, 379, 391, 1009, 1028, 1031
BstV2I GAAGAC 1 cut(s) 693
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 17
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 2 cut(s) 359, 444
BsuTUI ATCGAT 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 2 cut(s) 345, 819
BtsIMutI CAGTG 3 cut(s) 345, 819, 910
BtuMI TCGCGA 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 142, 199
CaiI CAGNNNCTG 1 cut(s) 1022
CfoI GCGC 2 cut(s) 641, 699
Cfr10I RCCGGY 2 cut(s) 197, 260
Cfr13I GGNCC 2 cut(s) 152, 266
Cfr42I CCGCGG 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 17
CpoI CGGWCCG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 1008
CspI CGGWCCG 1 cut(s) 266
CviAII CATG 2 cut(s) 706, 1142
CviQI GTAC 1 cut(s) 1008
DdeI CTNAG 5 cut(s) 8, 125, 426, 781, 1046
DpnI GATC 6 cut(s) 6, 20, 50, 134, 239, 772
DpnII GATC 6 cut(s) 4, 18, 48, 132, 237, 770
DraIII CACNNNGTG 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 1100
EarI CTCTTC 1 cut(s) 1100
Ecl136II GAGCTC 1 cut(s) 226
Eco105I TACGTA 1 cut(s) 961
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 228
Eco32I GATATC 1 cut(s) 846
Eco47I GGWCC 2 cut(s) 152, 266
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 3 cut(s) 50, 417, 896
Eco72I CACGTG 1 cut(s) 118
Eco91I GGTNACC 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 488
EcoRV GATATC 1 cut(s) 846
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 709, 1145
FalI AAGNNNNNCTT 4 cut(s) 444, 476, 683, 715
FaqI GGGAC 1 cut(s) 138
FatI CATG 2 cut(s) 705, 1141
FblI GTMKAC 1 cut(s) 96
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 1 cut(s) 438
GlaI GCGC 2 cut(s) 640, 698
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 2 cut(s) 642, 700
HaeIII GGCC 2 cut(s) 359, 444
HapII CCGG 2 cut(s) 198, 261
HhaI GCGC 2 cut(s) 641, 699
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 2 cut(s) 709, 1145
Hin6I GCGC 2 cut(s) 639, 697
HinP1I GCGC 2 cut(s) 639, 697
HindIII AAGCTT 1 cut(s) 861
HinfI GANTC 2 cut(s) 563, 935
HpaII CCGG 2 cut(s) 198, 261
HphI GGTGA 4 cut(s) 246, 352, 920, 930
Hpy166II GTNNAC 5 cut(s) 97, 189, 301, 343, 934
Hpy188I TCNGA 5 cut(s) 69, 223, 366, 568, 951
Hpy188III TCNNGA 8 cut(s) 22, 52, 382, 556, 581, 722, 768, 841
Hpy8I GTNNAC 5 cut(s) 97, 189, 301, 343, 934
Hpy99I CGWCG 4 cut(s) 38, 41, 233, 251
HpyAV CCTTC 9 cut(s) 68, 223, 333, 424, 587, 871, 905, 994, 998
HpyCH4III ACNGT 3 cut(s) 193, 606, 1126
HpyCH4IV ACGT 4 cut(s) 36, 90, 117, 960
HpyCH4V TGCA 6 cut(s) 503, 509, 709, 746, 812, 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 319, 356, 401, 1022, 1028
HpyF3I CTNAG 5 cut(s) 8, 125, 426, 781, 1046
HpySE526I ACGT 4 cut(s) 36, 90, 117, 960
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 2 cut(s) 709, 1145
HspAI GCGC 2 cut(s) 639, 697
KflI GGGWCCC 1 cut(s) 152
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
KspI CCGCGG 1 cut(s) 272
Kzo9I GATC 6 cut(s) 4, 18, 48, 132, 237, 770
LmnI GCTCC 4 cut(s) 149, 163, 524, 588
Lsp1109I GCAGC 8 cut(s) 48, 178, 297, 379, 391, 1009, 1028, 1031
LweI GCATC 3 cut(s) 23, 557, 715
MaeI CTAG 1 cut(s) 438
MaeII ACGT 4 cut(s) 36, 90, 117, 960
MaeIII GTNAC 2 cut(s) 252, 818
MalI GATC 6 cut(s) 6, 20, 50, 134, 239, 772
MbiI CCGCTC 1 cut(s) 362
MboI GATC 6 cut(s) 4, 18, 48, 132, 237, 770
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 228, 1149
MluCI AATT 2 cut(s) 415, 868
MlyI GAGTC 2 cut(s) 572, 929
Mph1103I ATGCAT 1 cut(s) 511
MroNI GCCGGC 1 cut(s) 197
MseI TTAA 2 cut(s) 450, 635
MslI CAYNNNNRTG 2 cut(s) 116, 296
MspA1I CMGCKG 5 cut(s) 106, 140, 271, 310, 1022
MspI CCGG 2 cut(s) 198, 261
MspR9I CCNGG 1 cut(s) 490
MvaI CCWGG 1 cut(s) 490
MvnI CGCG 2 cut(s) 23, 271
MwoI GCNNNNNNNGC 6 cut(s) 20, 319, 356, 401, 1022, 1028
NaeI GCCGGC 1 cut(s) 199
NdeII GATC 6 cut(s) 4, 18, 48, 132, 237, 770
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 709, 1145
NlaIV GGNNCC 5 cut(s) 145, 153, 154, 603, 1123
NmuCI GTSAC 2 cut(s) 252, 818
NruI TCGCGA 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 1 cut(s) 1145
PdiI GCCGGC 1 cut(s) 199
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 2 cut(s) 571, 929
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 2 cut(s) 571, 929
Ppu21I YACGTR 2 cut(s) 118, 961
PpuMI RGGWCCY 1 cut(s) 152
PshAI GACNNNNGTC 1 cut(s) 35
PsiI TTATAA 1 cut(s) 1040
Psp124BI GAGCTC 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 488
PspCI CACGTG 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 5 cut(s) 145, 153, 154, 603, 1123
PspPI GGNCC 2 cut(s) 152, 266
PspPPI RGGWCCY 1 cut(s) 152
PsrI GAACNNNNNNTAC 4 cut(s) 80, 112, 335, 367
PstNI CAGNNNCTG 1 cut(s) 1022
PsuI RGATCY 1 cut(s) 4
PvuI CGATCG 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 1022
RruI TCGCGA 1 cut(s) 23
RsaI GTAC 1 cut(s) 1009
RsaNI GTAC 1 cut(s) 1008
RseI CAYNNNNRTG 2 cut(s) 116, 296
Rsr2I CGGWCCG 1 cut(s) 266
RsrII CGGWCCG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 228
SacII CCGCGG 1 cut(s) 272
SaqAI TTAA 2 cut(s) 450, 635
Sau3AI GATC 6 cut(s) 4, 18, 48, 132, 237, 770
Sau96I GGNCC 2 cut(s) 152, 266
SchI GAGTC 2 cut(s) 572, 929
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 2 cut(s) 228, 1149
SfaNI GCATC 3 cut(s) 23, 557, 715
Sfr303I CCGCGG 1 cut(s) 272
SgrAI CRCCGGYG 1 cut(s) 260
SgrBI CCGCGG 1 cut(s) 272
SinI GGWCC 2 cut(s) 152, 266
SmiMI CAYNNNNRTG 2 cut(s) 116, 296
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SnaBI TACGTA 1 cut(s) 961
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 2 cut(s) 415, 868
SsiI CCGC 8 cut(s) 104, 138, 264, 269, 271, 308, 360, 694
SspMI CTAG 1 cut(s) 438
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 488
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 193, 606, 1126
TaiI ACGT 4 cut(s) 39, 93, 120, 963
TaqI TCGA 3 cut(s) 17, 375, 473
TaqII GACCGA 2 cut(s) 47, 86
TasI AATT 2 cut(s) 415, 868
TauI GCSGC 5 cut(s) 106, 140, 310, 362, 697
Tru1I TTAA 2 cut(s) 450, 635
Tru9I TTAA 2 cut(s) 450, 635
TscAI CASTG 3 cut(s) 352, 819, 910
TseFI GTSAC 2 cut(s) 252, 818
TseI GCWGC 8 cut(s) 61, 166, 310, 392, 404, 1016, 1019, 1022
Tsp45I GTSAC 2 cut(s) 252, 818
TspDTI ATGAA 5 cut(s) 549, 816, 976, 1014, 1123
TspRI CASTG 3 cut(s) 352, 819, 910
VpaK11BI GGWCC 2 cut(s) 152, 266
XapI RAATTY 1 cut(s) 415
XceI RCATGY 1 cut(s) 1145
XcmI CCANNNNNNNNNTGG 2 cut(s) 581, 1072
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 438
ZraI GACGTC 1 cut(s) 37
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.