Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002697

Physical Location & Seq

Genomic Coordinates Reverse (-)

10751656 .. 10753380

Gene Structure 1725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAGTTGGGAAAATCGATTGAGAACCATAACGACGTTGTGGTAAGACTAACGAAGCATGTCATCGCTACCGTCGCCAATGGCTCCAATCTTGTCTTCTCACCGATATCAATCAACGTTTTGCTCAGCCTCATCGCGGCAGGTTCATGTTCAGTCACCAAAGAACAAATCCTCTCATTCCTCATGTTACCGTCAACGGATCACCTCAACCTAGTCTTGGCTCAGATCATCGACGGCGGCACCGAGAAAAGTGATTTGCGCTTGTCTATAGCCAATGGTGTTTGGATAGACAAGTTTTTCTCCTTGAAGCTTTCCTTTAAAGACCTTTTGGAGAATTCTTACAAGGCAACTTGTAGTCAAGTTGACTTCGCAAGCAAGCCTTCTGAAGTGATTGATGAGGTGAATACATGGGCTGAAGTCCACACCAATGGACTCATCAAGCAGATTCTTTCACGCGATTCTATCGATACTATCCGTAGCAGCACACTCGTTCTTGCAAATGCTGTATATTTCAAAGGAGCGTGGAGCAGTAAATTTGATGCAAACATGACAAAAAAAAACGATTTTCATCTTCTTGATGGTACCTCGGTGAAAGTCCCCTTTATGACCAATTACGAGGACCAGTACCTAAGAAGCTATGATGGTTTCAAAGTTTTGCGCCTCCCTTATATAGAGGATCAACGTCAATTCTCCATGTACATTTATCTGCCTAATGATAAAGAAGGATTAGCTCCTCTGCTTGAGAAGATAGGCTCCGAACCAAGTTTCTTCGATAACCATATTCCGCTCCACTGTATATCAGTTGGTGCTTTTAGAATCCCAAAGTTTAAATTCTCTTTCGAGTTTAATGCTTCAGAAGTTCTGAAAGATATGGGGCTGACTTCACCATTTAATAATGGAGGTGGTTTAACTGAGATGGTTGATTCACCTTCCAATGGTGACGATCTATACGTCTCAAGCATTCTTCATAAAGCTTGTATTGAAGTGGATGAAGAGGGAACCGAAGCTGCAGCCGTCTCTGTTGGCGTCGTAAGTTGCACTTCTTTTAGGCGGAATCCCGATTTCGTAGCTGACCGTCCATTTCTGTTCACTGTCAGAGAAGACAAGAGTGGAGTGATTTTGTTCATGGGTCAAGTTCTTGATCCTTCAAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034641 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046483 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0098772 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko05146 map00190 map01100 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

385

Amino Acids

42.72

Weight (kDa)

5.26

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	9 - 382	2.4e-95	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47710 AT1G47710 AT1G51330 AT1G62160 AT1G62170 AT1G62170 AT1G63280 AT1G64010 AT1G64010 AT1G64030 AT2G14540 AT2G25240 AT2G26390 AT2G35580 AT3G45220
fragaria_vesca	FvH4_2g40700
malus_domestica	MD08G1040600.v1.1 MD08G1041200.v1.1 MD08G1041300.v1.1 MD08G1041500.v1.1 MD08G1041600.v1.1 MD14G1097300.v1.1 MD15G1035000.v1.1 MD15G1286900.v1.1
prunus_persica	Prupe.1G389200_v2.0.a1 Prupe.1G389300_v2.0.a1 Prupe.3G141200_v2.0.a1
pyrus_communis	pycom08g03320 pycom08g03330 pycom08g03340 pycom08g03360 pycom15g03220
rosa_chinensis	RchiOBHm_Chr6g0299901
rosa_laevigata	RLG00000011377
rosa_multiflora	Rmu_ssc0000158.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168290
rosa_rugosa	Rorug06G0293100
rosa_samantha	Rh4AG219100
rosa_wichuraiana	Rw6G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	2 cut(s)	239, 581
AccBSI	CCGCTC	1 cut(s)	787
AccII	CGCG	2 cut(s)	137, 456
AciI	CCGC	4 cut(s)	137, 237, 785, 1051
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	3 cut(s)	207, 684, 1136
AcsI	RAATTY	3 cut(s)	334, 533, 830
AcuI	CTGAAG	3 cut(s)	405, 435, 837
AcyI	GRCGYC	1 cut(s)	1026
AfaI	GTAC	3 cut(s)	583, 626, 698
AfiI	CCNNNNNNNGG	3 cut(s)	136, 217, 935
AgsI	TTSAA	5 cut(s)	307, 514, 649, 983, 1149
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	6 cut(s)	310, 636, 731, 974, 1007, 1070
AluI	AGCT	6 cut(s)	310, 636, 731, 974, 1007, 1070
Alw26I	GTCTC	2 cut(s)	958, 1021
AlwI	GGATC	3 cut(s)	207, 684, 1136
ApeKI	GCWGC	3 cut(s)	480, 1007, 1010
ApoI	RAATTY	3 cut(s)	334, 533, 830
Asp718I	GGTACC	1 cut(s)	581
AspLEI	GCGC	2 cut(s)	261, 660
AspS9I	GGNCC	1 cut(s)	619
AsuHPI	GGTGA	8 cut(s)	93, 148, 194, 412, 601, 876, 918, 950
AvaII	GGWCC	1 cut(s)	619
BaeI	ACNNNNGTAYC	2 cut(s)	573, 606
BanI	GGYRCC	2 cut(s)	239, 581
BbsI	GAAGAC	2 cut(s)	88, 1107
BbvI	GCAGC	3 cut(s)	492, 994, 1022
BccI	CCATC	3 cut(s)	572, 635, 910
BceAI	ACGGC	2 cut(s)	250, 998
BcgI	CGANNNNNNTGC	4 cut(s)	469, 503, 830, 864
BcoDI	GTCTC	2 cut(s)	958, 1021
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	2 cut(s)	267, 1008
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	5 cut(s)	138, 238, 481, 1008, 1011
BlpI	GCTNAGC	1 cut(s)	125
BlsI	GCNGC	5 cut(s)	139, 239, 482, 1009, 1012
Bme18I	GGWCC	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	5 cut(s)	85, 241, 583, 754, 1000
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	2 cut(s)	88, 1107
Bpu1102I	GCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	761, 940
Bsa29I	ATCGAT	2 cut(s)	17, 465
BsaBI	GATNNNNATC	2 cut(s)	110, 567
BsaHI	GRCGYC	1 cut(s)	1026
BsaJI	CCNNGG	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 217, 935
Bse1I	ACTGG	1 cut(s)	622
Bse8I	GATNNNNATC	2 cut(s)	110, 567
BseCI	ATCGAT	2 cut(s)	17, 465
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	1 cut(s)	994
BseJI	GATNNNNATC	2 cut(s)	110, 567
BseLI	CCNNNNNNNGG	3 cut(s)	136, 217, 935
BseMII	CTCAG	3 cut(s)	139, 236, 903
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	1 cut(s)	723
BseXI	GCAGC	3 cut(s)	492, 994, 1022
Bsh1236I	CGCG	2 cut(s)	137, 456
BshNI	GGYRCC	2 cut(s)	239, 581
BshVI	ATCGAT	2 cut(s)	17, 465
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	3 cut(s)	136, 217, 935
BsmAI	GTCTC	2 cut(s)	958, 1021
BsmBI	CGTCTC	2 cut(s)	958, 1021
BsmFI	GGGAC	1 cut(s)	581
BsmI	GAATGC	1 cut(s)	960
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	5 cut(s)	199, 225, 676, 943, 1141
Bsp1720I	GCTNAGC	1 cut(s)	125
BspACI	CCGC	4 cut(s)	137, 237, 785, 1051
BspCNI	CTCAG	3 cut(s)	138, 235, 904
BspDI	ATCGAT	2 cut(s)	17, 465
BspFNI	CGCG	2 cut(s)	137, 456
BspLI	GGNNCC	5 cut(s)	85, 241, 583, 754, 1000
BspMAI	CTGCAG	1 cut(s)	1012
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	3 cut(s)	207, 684, 1136
BspT107I	GGYRCC	2 cut(s)	239, 581
BsrBI	CCGCTC	1 cut(s)	787
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	5 cut(s)	199, 225, 676, 943, 1141
BssNI	GRCGYC	1 cut(s)	1026
Bst4CI	ACNGT	5 cut(s)	73, 192, 794, 1076, 1093
Bst6I	CTCTTC	1 cut(s)	987
BstACI	GRCGYC	1 cut(s)	1026
BstAUI	TGTACA	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	373, 377
BstDEI	CTNAG	4 cut(s)	125, 222, 629, 912
BstF5I	GGATG	1 cut(s)	994
BstFNI	CGCG	2 cut(s)	137, 456
BstHHI	GCGC	2 cut(s)	261, 660
BstKTI	GATC	5 cut(s)	202, 228, 679, 946, 1144
BstMAI	GTCTC	2 cut(s)	958, 1021
BstMBI	GATC	5 cut(s)	199, 225, 676, 943, 1141
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	62
BstSFI	CTRYAG	2 cut(s)	267, 1008
BstUI	CGCG	2 cut(s)	137, 456
BstV1I	GCAGC	3 cut(s)	492, 994, 1022
BstV2I	GAAGAC	2 cut(s)	88, 1107
BstXI	CCANNNNNNTGG	1 cut(s)	428
Bsu15I	ATCGAT	2 cut(s)	17, 465
BsuTUI	ATCGAT	2 cut(s)	17, 465
BtgZI	GCGATG	2 cut(s)	49, 118
BtsCI	GGATG	1 cut(s)	994
BtsIMutI	CAGTG	2 cut(s)	790, 1089
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	373, 377
CfoI	GCGC	2 cut(s)	261, 660
Cfr13I	GGNCC	1 cut(s)	619
ClaI	ATCGAT	2 cut(s)	17, 465
CseI	GACGC	1 cut(s)	1015
Csp6I	GTAC	3 cut(s)	582, 625, 697
CviAII	CATG	7 cut(s)	59, 147, 184, 408, 547, 694, 1126
CviQI	GTAC	3 cut(s)	582, 625, 697
DdeI	CTNAG	4 cut(s)	125, 222, 629, 912
DpnI	GATC	5 cut(s)	201, 227, 678, 945, 1143
DpnII	GATC	5 cut(s)	199, 225, 676, 943, 1141
DraI	TTTAAA	2 cut(s)	319, 829
Eam1104I	CTCTTC	1 cut(s)	987
EarI	CTCTTC	1 cut(s)	987
EciI	GGCGGA	1 cut(s)	1066
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	619
Eco57I	CTGAAG	3 cut(s)	405, 435, 837
EcoRI	GAATTC	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	108
Esp3I	CGTCTC	2 cut(s)	958, 1021
FaeI	CATG	7 cut(s)	62, 150, 187, 411, 550, 697, 1129
FalI	AAGNNNNNCTT	6 cut(s)	299, 331, 364, 396, 1024, 1056
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	7 cut(s)	58, 146, 183, 407, 546, 693, 1125
Fnu4HI	GCNGC	5 cut(s)	138, 238, 481, 1008, 1011
FokI	GGATG	1 cut(s)	1001
Fsp4HI	GCNGC	5 cut(s)	138, 238, 481, 1008, 1011
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	260, 659
GluI	GCNGC	5 cut(s)	138, 238, 481, 1008, 1011
HgaI	GACGC	1 cut(s)	1015
HhaI	GCGC	2 cut(s)	261, 660
Hin1I	GRCGYC	1 cut(s)	1026
Hin1II	CATG	7 cut(s)	62, 150, 187, 411, 550, 697, 1129
Hin6I	GCGC	2 cut(s)	259, 658
HinP1I	GCGC	2 cut(s)	259, 658
HincII	GTYRAC	2 cut(s)	195, 364
HindII	GTYRAC	2 cut(s)	195, 364
HindIII	AAGCTT	2 cut(s)	308, 972
HinfI	GANTC	6 cut(s)	432, 445, 458, 816, 923, 1054
HphI	GGTGA	8 cut(s)	93, 148, 194, 412, 601, 876, 918, 950
Hpy166II	GTNNAC	4 cut(s)	195, 364, 421, 1089
Hpy188I	TCNGA	6 cut(s)	225, 385, 757, 856, 864, 1097
Hpy188III	TCNNGA	3 cut(s)	575, 1058, 1139
Hpy8I	GTNNAC	4 cut(s)	195, 364, 421, 1089
Hpy99I	CGWCG	4 cut(s)	38, 77, 236, 1031
HpyAV	CCTTC	4 cut(s)	390, 716, 939, 1155
HpyCH4III	ACNGT	5 cut(s)	73, 192, 794, 1076, 1093
HpyCH4IV	ACGT	4 cut(s)	36, 117, 682, 951
HpyCH4V	TGCA	4 cut(s)	497, 542, 1010, 1038
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	4 cut(s)	125, 222, 629, 912
HpySE526I	ACGT	4 cut(s)	36, 117, 682, 951
Hsp92I	GRCGYC	1 cut(s)	1026
Hsp92II	CATG	7 cut(s)	62, 150, 187, 411, 550, 697, 1129
HspAI	GCGC	2 cut(s)	259, 658
KpnI	GGTACC	1 cut(s)	585
Kzo9I	GATC	5 cut(s)	199, 225, 676, 943, 1141
LmnI	GCTCC	6 cut(s)	89, 518, 525, 736, 758, 792
LpnPI	CCDG	2 cut(s)	126, 635
Lsp1109I	GCAGC	3 cut(s)	492, 994, 1022
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	4 cut(s)	36, 117, 682, 951
MaeIII	GTNAC	3 cut(s)	154, 186, 938
MalI	GATC	5 cut(s)	201, 227, 678, 945, 1143
MbiI	CCGCTC	1 cut(s)	787
MboI	GATC	5 cut(s)	199, 225, 676, 943, 1141
MboII	GAAGA	7 cut(s)	88, 563, 757, 760, 956, 1004, 1112
MluCI	AATT	5 cut(s)	334, 533, 610, 686, 830
MlyI	GAGTC	1 cut(s)	426
MseI	TTAA	5 cut(s)	318, 828, 846, 891, 908
MslI	CAYNNNNRTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	960
MvnI	CGCG	2 cut(s)	137, 456
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	5 cut(s)	199, 225, 676, 943, 1141
NlaIII	CATG	7 cut(s)	62, 150, 187, 411, 550, 697, 1129
NlaIV	GGNNCC	5 cut(s)	85, 241, 583, 754, 1000
NmuCI	GTSAC	2 cut(s)	154, 938
NspI	RCATGY	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 948
PctI	GAATGC	1 cut(s)	960
PfeI	GAWTC	5 cut(s)	445, 458, 816, 923, 1054
PkrI	GCNGC	5 cut(s)	139, 239, 482, 1009, 1012
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
Psp1406I	AACGTT	1 cut(s)	117
PspN4I	GGNNCC	5 cut(s)	85, 241, 583, 754, 1000
PspPI	GGNCC	1 cut(s)	619
PstI	CTGCAG	1 cut(s)	1012
RsaI	GTAC	3 cut(s)	583, 626, 698
RsaNI	GTAC	3 cut(s)	582, 625, 697
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	5 cut(s)	318, 828, 846, 891, 908
SatI	GCNGC	5 cut(s)	138, 238, 481, 1008, 1011
Sau3AI	GATC	5 cut(s)	199, 225, 676, 943, 1141
Sau96I	GGNCC	1 cut(s)	619
SchI	GAGTC	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	2 cut(s)	267, 1008
SinI	GGWCC	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	2 cut(s)	740, 955
SmoI	CTYRAG	2 cut(s)	740, 955
Sse9I	AATT	5 cut(s)	334, 533, 610, 686, 830
SsiI	CCGC	4 cut(s)	137, 237, 785, 1051
SspMI	CTAG	1 cut(s)	212
TaaI	ACNGT	5 cut(s)	73, 192, 794, 1076, 1093
TaiI	ACGT	4 cut(s)	39, 120, 685, 954
TaqI	TCGA	5 cut(s)	17, 231, 465, 771, 840
TasI	AATT	5 cut(s)	334, 533, 610, 686, 830
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	2 cut(s)	140, 240
TfiI	GAWTC	5 cut(s)	445, 458, 816, 923, 1054
Tru1I	TTAA	5 cut(s)	318, 828, 846, 891, 908
Tru9I	TTAA	5 cut(s)	318, 828, 846, 891, 908
TscAI	CASTG	2 cut(s)	797, 1096
TseFI	GTSAC	2 cut(s)	154, 938
TseI	GCWGC	3 cut(s)	480, 1007, 1010
Tsp45I	GTSAC	2 cut(s)	154, 938
TspDTI	ATGAA	5 cut(s)	135, 557, 956, 1005, 1114
TspGWI	ACGGA	2 cut(s)	212, 464
TspRI	CASTG	2 cut(s)	797, 1096
VpaK11BI	GGWCC	1 cut(s)	619
XapI	RAATTY	3 cut(s)	334, 533, 830
XceI	RCATGY	1 cut(s)	62
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.