Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002697

Physical Location & Seq

Genomic Coordinates Forward (+)

22973840 .. 22975754

Gene Structure 1915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGAGCCAAAAGAGAAGAAACAAAAGCTTGACACATCAGAAGTCGCAAGTCCCTCTCTCTCAAAGACGCATCTAAAGAAGAAGAAAACGAAGAAGCAAAAAATCAGAAAATCACAAGAAATCACAAGTCCCTCTCTGTCAAAGAATACAGATTTGGTAATCGCAAGTCCTTCTCTATCAAATATTGATGTGGGAGAAGCAATGAAGAAGCAAAACGATGTCGCTATATTCCTTACGGGGATAGTAATCTCTTCCGTAGCCAAAAACTCTAATTTTGTCTTCTCTCCTGCATCAATCAACGCCGCACTCACCATGGTTGCTGCTAGTTCCGGTGGTGAACAAGGTGAAGAACTAAGATCCTTCATCCTCTCCTTCCTCAAGTCATCCTCAACTGATGAACTTAACGCAATTTTCCGCGAAATCGCTTCCGTCGTTCTTGTTGACGGAAGCAAAAAAGGCGGCCCCAAAATCGCGGTGGTTAATGGAATGTGGATGGATCAGTCGCTATCTGTCAATCCCTTGTCGAAAGATCTCTTTAAGAATTTCTTCAGTGCTGCTTTCGCTCAAGTTGATTTCAGATCCAAGGCCGAAGAAGTGCGTACGGAGGTGAATGCGTGGGCATCAAGTCACACAAATGGTCTCATCAAAGATCTTCTTCCTCGTGGATCAGTTACAAGCCTAACCGACAGGGTTTATGGAAGCGCATTGTACTTCAAAGGAACCTGGGAGGAAAAATACTCAAAGTCAATGACGAAATGCAAACCTTTTTACCTTCTCAATGGAACATCAGTGTCTGTGCCATTCATGAGTAGCTTTGAGAAACAATACATTGCGGCTTATGATGGTTTTAAGGTACTCAGACTTCCTTATCGACAAGGCCGTGACAATACCAACCGCAACTTTGCAATGTATATCTATCTCCCGGACAAGAAAGGTGAATTGGATGATCTTTTGGAAAGAATGACATCTACTCCTGGATTCTTGGATAGTCACAATCCAGAAAGAAGAGTTAAAGTTGGTAAATTCAGAATTCCAAAGTTTAAGATCGAATTCGGGTTTGAAGCTTCAAGTGCTTTCAGTGACTTTGAGCTTGATGTGTCATTTTACCAAAAAACTTTGATTGAAATCGATGAAAAAGGTACCGAAGCTGTTACTTTTACTGCATTTCGTTCTGCATACCTTGGTTGCGCTTTGGTGAAGCCTATTGATTTTGTAGCAGATCATCCATTTCTTTTCTTGATTAGAGAAGAACAAACCGGAACTGTTTTGTTCGCTGGTCAAATCTTCGATCCTTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034641 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046483 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0098772 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko05146 map00190 map01100 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

433

Amino Acids

48.17

Weight (kDa)

9.1

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	71 - 431	1.4e-72	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47710 AT1G47710 AT1G51330 AT1G62160 AT1G62170 AT1G62170 AT1G63280 AT1G64010 AT1G64010 AT1G64030 AT2G14540 AT2G25240 AT2G26390 AT2G35580 AT3G45220
fragaria_vesca	FvH4_2g40700
malus_domestica	MD08G1040600.v1.1 MD08G1041200.v1.1 MD08G1041300.v1.1 MD08G1041500.v1.1 MD08G1041600.v1.1 MD14G1097300.v1.1 MD15G1035000.v1.1 MD15G1286900.v1.1
prunus_persica	Prupe.1G389200_v2.0.a1 Prupe.1G389300_v2.0.a1 Prupe.3G141200_v2.0.a1
pyrus_communis	pycom08g03320 pycom08g03330 pycom08g03340 pycom08g03360 pycom15g03220
rosa_chinensis	RchiOBHm_Chr6g0299901
rosa_laevigata	RLG00000011377
rosa_multiflora	Rmu_ssc0000158.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168290
rosa_rugosa	Rorug06G0293100
rosa_samantha	Rh4AG219100
rosa_wichuraiana	Rw6G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1139
AccB1I	GGYRCC	1 cut(s)	1139
AccII	CGCG	2 cut(s)	417, 473
AciI	CCGC	6 cut(s)	303, 415, 459, 473, 833, 895
AclWI	GGATC	5 cut(s)	351, 504, 573, 673, 1283
AcsI	RAATTY	4 cut(s)	541, 1022, 1029, 1049
AcuI	CTGAAG	1 cut(s)	532
AfaI	GTAC	4 cut(s)	601, 710, 855, 1141
AgsI	TTSAA	4 cut(s)	715, 1061, 1068, 1124
AjnI	CCWGG	2 cut(s)	722, 973
AjuI	GAANNNNNNNTTGG	4 cut(s)	137, 169, 923, 955
AluBI	AGCT	5 cut(s)	28, 813, 1064, 1090, 1148
AluI	AGCT	5 cut(s)	28, 813, 1064, 1090, 1148
Alw26I	GTCTC	1 cut(s)	644
AlwI	GGATC	5 cut(s)	351, 504, 573, 673, 1283
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	3 cut(s)	460, 585, 877
ApeKI	GCWGC	2 cut(s)	320, 554
ApoI	RAATTY	4 cut(s)	541, 1022, 1029, 1049
Asp700I	GAANNNNTTC	1 cut(s)	545
Asp718I	GGTACC	1 cut(s)	1139
AspLEI	GCGC	2 cut(s)	704, 1190
AspS9I	GGNCC	1 cut(s)	461
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	6 cut(s)	301, 347, 356, 619, 947, 1207
BanI	GGYRCC	1 cut(s)	1139
BarI	GAAGNNNNNNTAC	2 cut(s)	846, 878
BauI	CACGAG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	307, 541
BccI	CCATC	2 cut(s)	487, 836
BceAI	ACGGC	1 cut(s)	864
BcgI	CGANNNNNNTGC	1 cut(s)	1277
BciT130I	CCWGG	2 cut(s)	724, 975
BcnI	CCSGG	1 cut(s)	923
BcoDI	GTCTC	1 cut(s)	644
BfaI	CTAG	1 cut(s)	324
BglII	AGATCT	2 cut(s)	529, 649
BisI	GCNGC	5 cut(s)	303, 321, 460, 555, 834
BlsI	GCNGC	5 cut(s)	304, 322, 461, 556, 835
Bme1390I	CCNGG	3 cut(s)	724, 923, 975
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	4 cut(s)	6, 463, 721, 1141
BmrFI	CCNGG	3 cut(s)	724, 923, 975
BmsI	GCATC	3 cut(s)	79, 299, 629
BpiI	GAAGAC	1 cut(s)	271
BpuEI	CTTGAG	2 cut(s)	362, 549
BpuMI	CCSGG	1 cut(s)	923
Bsa29I	ATCGAT	1 cut(s)	1128
BsaBI	GATNNNNATC	2 cut(s)	245, 1124
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	4 cut(s)	312, 582, 723, 1180
BsaWI	WCCGGW	2 cut(s)	329, 1256
BsaXI	ACNNNNNCTCC	2 cut(s)	955, 985
Bse3DI	GCAATG	3 cut(s)	207, 828, 912
Bse8I	GATNNNNATC	2 cut(s)	245, 1124
BseBI	CCWGG	2 cut(s)	724, 975
BseCI	ATCGAT	1 cut(s)	1128
BseDI	CCNNGG	4 cut(s)	312, 582, 723, 1180
BseGI	GGATG	5 cut(s)	363, 383, 498, 949, 1222
BseJI	GATNNNNATC	2 cut(s)	245, 1124
BseMI	GCAATG	3 cut(s)	207, 828, 912
BseMII	CTCAG	1 cut(s)	871
BseXI	GCAGC	2 cut(s)	307, 541
Bsh1236I	CGCG	2 cut(s)	417, 473
BshFI	GGCC	3 cut(s)	462, 587, 879
BshNI	GGYRCC	1 cut(s)	1139
BshVI	ATCGAT	1 cut(s)	1128
BsiSI	CCGG	3 cut(s)	330, 923, 1257
BsiWI	CGTACG	1 cut(s)	599
BslFI	GGGAC	2 cut(s)	36, 114
BsmAI	GTCTC	1 cut(s)	644
BsmFI	GGGAC	2 cut(s)	36, 114
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	3 cut(s)	462, 587, 879
Bso31I	GGTCTC	1 cut(s)	644
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	6 cut(s)	303, 415, 459, 473, 833, 895
BspANI	GGCC	3 cut(s)	462, 587, 879
BspCNI	CTCAG	1 cut(s)	870
BspDI	ATCGAT	1 cut(s)	1128
BspFNI	CGCG	2 cut(s)	417, 473
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	4 cut(s)	6, 463, 721, 1141
BspPI	GGATC	5 cut(s)	351, 504, 573, 673, 1283
BspT107I	GGYRCC	1 cut(s)	1139
BspTNI	GGTCTC	1 cut(s)	644
BsrDI	GCAATG	3 cut(s)	207, 828, 912
BssECI	CCNNGG	4 cut(s)	312, 582, 723, 1180
BssSI	CACGAG	1 cut(s)	660
BssT1I	CCWWGG	3 cut(s)	312, 582, 1180
Bst2BI	CACGAG	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	724, 975
Bst4CI	ACNGT	1 cut(s)	1264
Bst6I	CTCTTC	2 cut(s)	256, 1000
BstDEI	CTNAG	3 cut(s)	353, 857, 1299
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	5 cut(s)	363, 383, 498, 949, 1222
BstFNI	CGCG	2 cut(s)	417, 473
BstHHI	GCGC	2 cut(s)	704, 1190
BstMAI	GTCTC	1 cut(s)	644
BstMWI	GCNNNNNNNGC	3 cut(s)	456, 560, 1070
BstNI	CCWGG	2 cut(s)	724, 975
BstSCI	CCNGG	3 cut(s)	722, 921, 973
BstUI	CGCG	2 cut(s)	417, 473
BstV1I	GCAGC	2 cut(s)	307, 541
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	4 cut(s)	356, 529, 578, 649
BstYI	RGATCY	4 cut(s)	356, 529, 578, 649
Bsu15I	ATCGAT	1 cut(s)	1128
BsuRI	GGCC	3 cut(s)	462, 587, 879
BsuTUI	ATCGAT	1 cut(s)	1128
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	5 cut(s)	363, 383, 498, 949, 1222
BtsIMutI	CAGTG	3 cut(s)	556, 795, 1084
CaiI	CAGNNNCTG	1 cut(s)	794
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	2 cut(s)	704, 1190
Cfr13I	GGNCC	1 cut(s)	461
ClaI	ATCGAT	1 cut(s)	1128
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	4 cut(s)	600, 709, 854, 1140
CviAII	CATG	2 cut(s)	313, 805
CviQI	GTAC	4 cut(s)	600, 709, 854, 1140
DdeI	CTNAG	3 cut(s)	353, 857, 1299
Eam1104I	CTCTTC	2 cut(s)	256, 1000
EarI	CTCTTC	2 cut(s)	256, 1000
Eco130I	CCWWGG	3 cut(s)	312, 582, 1180
Eco31I	GGTCTC	1 cut(s)	644
Eco57I	CTGAAG	1 cut(s)	532
EcoRI	GAATTC	2 cut(s)	1029, 1049
EcoRII	CCWGG	2 cut(s)	722, 973
EcoT14I	CCWWGG	3 cut(s)	312, 582, 1180
ErhI	CCWWGG	3 cut(s)	312, 582, 1180
FaeI	CATG	2 cut(s)	316, 808
FaiI	YATR	7 cut(s)	227, 314, 696, 806, 840, 912, 1177
FalI	AAGNNNNNCTT	4 cut(s)	530, 562, 639, 671
FaqI	GGGAC	2 cut(s)	36, 114
FatI	CATG	2 cut(s)	312, 804
Fnu4HI	GCNGC	5 cut(s)	303, 321, 460, 555, 834
FokI	GGATG	5 cut(s)	350, 370, 505, 956, 1209
Fsp4HI	GCNGC	5 cut(s)	303, 321, 460, 555, 834
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	2 cut(s)	703, 1189
GluI	GCNGC	5 cut(s)	303, 321, 460, 555, 834
HaeIII	GGCC	3 cut(s)	462, 587, 879
HapII	CCGG	3 cut(s)	330, 923, 1257
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	704, 1190
Hin1II	CATG	2 cut(s)	316, 808
Hin6I	GCGC	2 cut(s)	702, 1188
HinP1I	GCGC	2 cut(s)	702, 1188
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	2 cut(s)	26, 1062
HinfI	GANTC	1 cut(s)	978
HpaII	CCGG	3 cut(s)	330, 923, 1257
HphI	GGTGA	6 cut(s)	301, 347, 356, 619, 947, 1207
Hpy166II	GTNNAC	2 cut(s)	338, 442
Hpy188I	TCNGA	5 cut(s)	40, 107, 578, 860, 1028
Hpy188III	TCNNGA	3 cut(s)	805, 998, 1237
Hpy8I	GTNNAC	2 cut(s)	338, 442
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	5 cut(s)	180, 370, 382, 782, 1302
HpyCH4III	ACNGT	1 cut(s)	1264
HpyCH4V	TGCA	5 cut(s)	290, 759, 905, 1163, 1175
HpyF10VI	GCNNNNNNNGC	3 cut(s)	456, 560, 1070
HpyF3I	CTNAG	3 cut(s)	353, 857, 1299
Hsp92II	CATG	2 cut(s)	316, 808
HspAI	GCGC	2 cut(s)	702, 1188
KpnI	GGTACC	1 cut(s)	1143
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	307, 541
LweI	GCATC	3 cut(s)	79, 299, 629
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	6 cut(s)	626, 670, 881, 989, 1079, 1150
MflI	RGATCY	4 cut(s)	356, 529, 578, 649
MluCI	AATT	7 cut(s)	271, 408, 541, 938, 1022, 1029, 1049
MnlI	CCTC	8 cut(s)	64, 142, 377, 386, 397, 598, 669, 721
MroXI	GAANNNNTTC	1 cut(s)	545
MseI	TTAA	6 cut(s)	402, 480, 537, 849, 1011, 1041
MslI	CAYNNNNRTG	1 cut(s)	633
MspI	CCGG	3 cut(s)	330, 923, 1257
MspR9I	CCNGG	3 cut(s)	724, 923, 975
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	724, 975
MvnI	CGCG	2 cut(s)	417, 473
MwoI	GCNNNNNNNGC	3 cut(s)	456, 560, 1070
NciI	CCSGG	1 cut(s)	923
NcoI	CCATGG	1 cut(s)	312
NlaIII	CATG	2 cut(s)	316, 808
NlaIV	GGNNCC	4 cut(s)	6, 463, 721, 1141
NmuCI	GTSAC	4 cut(s)	626, 881, 989, 1079
PagI	TCATGA	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	2 cut(s)	429, 877
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	978
Pfl23II	CGTACG	1 cut(s)	599
PfoI	TCCNGGA	2 cut(s)	921, 973
PkrI	GCNGC	5 cut(s)	304, 322, 461, 556, 835
Psp6I	CCWGG	2 cut(s)	722, 973
PspGI	CCWGG	2 cut(s)	722, 973
PspLI	CGTACG	1 cut(s)	599
PspN4I	GGNNCC	4 cut(s)	6, 463, 721, 1141
PspPI	GGNCC	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	4 cut(s)	356, 529, 578, 649
RsaI	GTAC	4 cut(s)	601, 710, 855, 1141
RsaNI	GTAC	4 cut(s)	600, 709, 854, 1140
RseI	CAYNNNNRTG	1 cut(s)	633
SaqAI	TTAA	6 cut(s)	402, 480, 537, 849, 1011, 1041
SatI	GCNGC	5 cut(s)	303, 321, 460, 555, 834
Sau96I	GGNCC	1 cut(s)	461
ScrFI	CCNGG	3 cut(s)	724, 923, 975
SfaNI	GCATC	3 cut(s)	79, 299, 629
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	2 cut(s)	377, 564
SmoI	CTYRAG	2 cut(s)	377, 564
Sse9I	AATT	7 cut(s)	271, 408, 541, 938, 1022, 1029, 1049
SsiI	CCGC	6 cut(s)	303, 415, 459, 473, 833, 895
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	722, 921, 973
StyI	CCWWGG	3 cut(s)	312, 582, 1180
TaaI	ACNGT	1 cut(s)	1264
TaqI	TCGA	5 cut(s)	524, 871, 1047, 1128, 1287
TasI	AATT	7 cut(s)	271, 408, 541, 938, 1022, 1029, 1049
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	3 cut(s)	305, 462, 836
TfiI	GAWTC	1 cut(s)	978
Tru1I	TTAA	6 cut(s)	402, 480, 537, 849, 1011, 1041
Tru9I	TTAA	6 cut(s)	402, 480, 537, 849, 1011, 1041
TscAI	CASTG	3 cut(s)	556, 795, 1084
TseFI	GTSAC	4 cut(s)	626, 881, 989, 1079
TseI	GCWGC	2 cut(s)	320, 554
Tsp45I	GTSAC	4 cut(s)	626, 881, 989, 1079
TspDTI	ATGAA	5 cut(s)	218, 352, 411, 793, 1146
TspGWI	ACGGA	4 cut(s)	244, 418, 459, 617
TspRI	CASTG	3 cut(s)	556, 795, 1084
XapI	RAATTY	4 cut(s)	541, 1022, 1029, 1049
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	545
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.