Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002697

Physical Location & Seq

Genomic Coordinates Reverse (-)

26295058 .. 26295462

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1286900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGATCTGAGAGAAAGCATCATCAACCAAAACGACTTCACTCTGGGGTTAACGAAGCAGCTGCTTCAGACTGAAGGCAAGCAATCGAACCTCGTGTACTCGTCACTGTCTATCCACGTGTTGTTGAGCCTGATCGCAGCTAGGTCAAAGGATCAAACTCAGGACCAGCTGTTGTCTTTTTTTAAGTCAAACTCTATCGACCACCTCAACTCCTTCGCTGCCGAGCTCGTCTCTGTGATCTTCTCCGATGGGTCCCCTAGCGGGGGCCCCCAGCTATCGTTTGCGAATGCGAATGGTGGTTGGGTGGACATGCGTCTTCCTCTGAAGCCATATTTCAAGCAGGTGGTGGAATCTTCTTACATGGCCGCTCTTGCCCAAGTTGATTTTCAGACCAATGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

135

Amino Acids

14.69

Weight (kDa)

5.15

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	9 - 133	1.7e-17	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47710 AT1G47710 AT1G51330 AT1G62160 AT1G62170 AT1G62170 AT1G63280 AT1G64010 AT1G64010 AT1G64030 AT2G14540 AT2G25240 AT2G26390 AT2G35580 AT3G45220
fragaria_vesca	FvH4_2g40700
malus_domestica	MD08G1040600.v1.1 MD08G1041200.v1.1 MD08G1041300.v1.1 MD08G1041500.v1.1 MD08G1041600.v1.1 MD14G1097300.v1.1 MD15G1035000.v1.1 MD15G1286900.v1.1
prunus_persica	Prupe.1G389200_v2.0.a1 Prupe.1G389300_v2.0.a1 Prupe.3G141200_v2.0.a1
pyrus_communis	pycom08g03320 pycom08g03330 pycom08g03340 pycom08g03360 pycom15g03220
rosa_chinensis	RchiOBHm_Chr6g0299901
rosa_laevigata	RLG00000011377
rosa_multiflora	Rmu_ssc0000158.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168290
rosa_rugosa	Rorug06G0293100
rosa_samantha	Rh4AG219100
rosa_wichuraiana	Rw6G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	368
AciI	CCGC	2 cut(s)	261, 366
AclWI	GGATC	2 cut(s)	12, 159
AcoI	YGGCCR	1 cut(s)	363
AcuI	CTGAAG	3 cut(s)	50, 93, 344
AcvI	CACGTG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	3 cut(s)	261, 262, 263
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	5 cut(s)	61, 140, 169, 226, 274
AluI	AGCT	5 cut(s)	61, 140, 169, 226, 274
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	12, 159
AoxI	GGCC	2 cut(s)	265, 363
ApaI	GGGCCC	1 cut(s)	269
ApeKI	GCWGC	5 cut(s)	58, 61, 137, 218, 398
AspS9I	GGNCC	4 cut(s)	163, 252, 265, 266
AvaII	GGWCC	2 cut(s)	163, 252
BaeGI	GKGCMC	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	228, 269
BauI	CACGAG	1 cut(s)	92
BbrPI	CACGTG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	5 cut(s)	48, 70, 149, 205, 385
BccI	CCATC	1 cut(s)	242
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	141, 258
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	6 cut(s)	59, 62, 138, 219, 366, 399
BlsI	GCNGC	6 cut(s)	60, 63, 139, 220, 367, 400
Bme18I	GGWCC	2 cut(s)	163, 252
BmgT120I	GGNCC	4 cut(s)	163, 252, 265, 266
BmiI	GGNNCC	5 cut(s)	253, 254, 266, 267, 268
BmsI	GCATC	1 cut(s)	27
BoxI	GACNNNNGTC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	308
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BsaAI	YACGTR	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 262, 263
BseLI	CCNNNNNNNGG	3 cut(s)	261, 262, 263
BseMII	CTCAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	5 cut(s)	48, 70, 149, 205, 385
BseYI	CCCAGC	1 cut(s)	270
BshFI	GGCC	2 cut(s)	267, 365
BsiHKAI	GWGCWC	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	3 cut(s)	261, 262, 263
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	267, 365
Bsp120I	GGGCCC	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	228, 269
Bsp143I	GATC	4 cut(s)	4, 132, 151, 237
BspACI	CCGC	2 cut(s)	261, 366
BspANI	GGCC	2 cut(s)	267, 365
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	5 cut(s)	253, 254, 266, 267, 268
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	12, 159
BsrBI	CCGCTC	1 cut(s)	368
BssMI	GATC	4 cut(s)	4, 132, 151, 237
BssSI	CACGAG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	8, 159
BstKTI	GATC	4 cut(s)	7, 135, 154, 240
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	4 cut(s)	4, 132, 151, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	313
BstPAI	GACNNNNGTC	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	269
BstV1I	GCAGC	5 cut(s)	48, 70, 149, 205, 385
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	267, 365
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	163, 252, 265, 266
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	2 cut(s)	310, 361
CviJI	RGCY	9 cut(s)	61, 129, 140, 169, 226, 267, 274, 328, 365
CviKI_1	RGCY	9 cut(s)	61, 129, 140, 169, 226, 267, 274, 328, 365
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	8, 159
DpnI	GATC	4 cut(s)	6, 134, 153, 239
DpnII	GATC	4 cut(s)	4, 132, 151, 237
EaeI	YGGCCR	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	228, 269
Eco47I	GGWCC	2 cut(s)	163, 252
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	3 cut(s)	50, 93, 344
Eco72I	CACGTG	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	226
EcoO109I	RGGNCCY	3 cut(s)	252, 265, 266
EcoT38I	GRGCYC	2 cut(s)	228, 269
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	2 cut(s)	313, 364
FaiI	YATR	3 cut(s)	311, 331, 362
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	309, 360
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	6 cut(s)	59, 62, 138, 219, 366, 399
FriOI	GRGCYC	2 cut(s)	228, 269
Fsp4HI	GCNGC	6 cut(s)	59, 62, 138, 219, 366, 399
FspBI	CTAG	2 cut(s)	141, 258
GluI	GCNGC	6 cut(s)	59, 62, 138, 219, 366, 399
GsaI	CCCAGC	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	267, 365
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	313, 364
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	350
HpaI	GTTAAC	1 cut(s)	51
Hpy166II	GTNNAC	3 cut(s)	51, 97, 307
Hpy188I	TCNGA	5 cut(s)	9, 69, 247, 324, 390
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	3 cut(s)	51, 97, 307
HpyAV	CCTTC	2 cut(s)	68, 223
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	8, 159
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	313, 364
KflI	GGGWCCC	1 cut(s)	252
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	4, 132, 151, 237
LpnPI	CCDG	6 cut(s)	29, 143, 146, 179, 284, 326
Lsp1109I	GCAGC	5 cut(s)	48, 70, 149, 205, 385
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	2 cut(s)	141, 258
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	4 cut(s)	6, 134, 153, 239
MbiI	CCGCTC	1 cut(s)	368
MboI	GATC	4 cut(s)	4, 132, 151, 237
MboII	GAAGA	3 cut(s)	232, 308, 345
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	228, 269
MnlI	CCTC	3 cut(s)	101, 215, 330
MseI	TTAA	3 cut(s)	50, 183, 403
MspA1I	CMGCKG	2 cut(s)	61, 169
Mva1269I	GAATGC	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	4 cut(s)	4, 132, 151, 237
NlaIII	CATG	2 cut(s)	313, 364
NlaIV	GGNNCC	5 cut(s)	253, 254, 266, 267, 268
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	102
NspI	RCATGY	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	331
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	6 cut(s)	60, 63, 139, 220, 367, 400
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	252
PshAI	GACNNNNGTC	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	252
PspCI	CACGTG	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	270
PspN4I	GGNNCC	5 cut(s)	253, 254, 266, 267, 268
PspOMI	GGGCCC	1 cut(s)	265
PspPI	GGNCC	4 cut(s)	163, 252, 265, 266
PspPPI	RGGWCCY	1 cut(s)	252
PsrI	GAACNNNNNNTAC	2 cut(s)	80, 112
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	61, 169
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	50, 183, 403
SatI	GCNGC	6 cut(s)	59, 62, 138, 219, 366, 399
Sau3AI	GATC	4 cut(s)	4, 132, 151, 237
Sau96I	GGNCC	4 cut(s)	163, 252, 265, 266
SduI	GDGCHC	2 cut(s)	228, 269
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	2 cut(s)	163, 252
SsiI	CCGC	2 cut(s)	261, 366
SspMI	CTAG	2 cut(s)	141, 258
SstI	GAGCTC	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	86, 198
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	3 cut(s)	50, 183, 403
Tru9I	TTAA	3 cut(s)	50, 183, 403
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	5 cut(s)	58, 61, 137, 218, 398
Tsp45I	GTSAC	1 cut(s)	102
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	163, 252
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	2 cut(s)	141, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.