Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Forward (+)

17913711 .. 17916101

Gene Structure 2391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACGTCTCCTCTCTCAGATCTCCTAAACCTTGATCTATCAGACACCAAGAAAATCATCGCTGAATACATATGGATCGGTGGCTCTGGAATGGATATTAGAAGCAAAGCCAGGACATTACCAGGACCAGTAAGTAATCCAACAAAGCTTCCAAAATGGAACTACGATGGATCTAGCACCGATCAAGCTGCCGGAGATGATAGTGAAGTCATTCTTTATCCTCAGGCAATATTTAAGGACCCATTCAGGAAGGGGAACAACATTCTGGTGATGTGTGATGCTTACAGACCGGCCGGAGATCCAATTCCGACCAACAATAGGCACAAGGCCGTAAAAATCTTCGATCATCCCAATGTGAAGGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATACACATTACTTAAAAAAGATGTGAAGTGGCCACTAGGTTGGCCTCTTGGTGGCTTTCCTGGTCCTCAGGGACCGTACTATTGTGCAGTAGGTGCAGACAAAGCTTTTGGTCGTGACATTGTCGATGCTCACTATAAAGCTTGTCTATACTCCGGTTTGAGTATTGGTGGTGCCAATGGTGAAGTCATGCCTGGACAATGGGAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCAGGTGATCAATTATGGGTTGCTCGTTACATTCTTGAGAGGATTACTGAGATATGCGGTGTGATTGTCTCATTCGATCCAAAACCAATCCAGGGTGATTGGAATGGAGCAGCCGCTCATACGAACTTCAGTACAAAATCGATGAGGAAAGATGGAGGACTGGATTTGATTAAGGAAGCAATAAAGAAGCTTGAAGTGAAACACAAACAACACATTGCTGCTTATGGTGAAGGCAACGAGAGGCGTCTCACTGGGAAGCATGAAACTGCAGACATCAACACTTTCTCTTGGGGAGTGGCGGATCGTGGAGCATCGGTGAGAGTAGGAAGAGATACGGAGAAAGAAGGTAAAGGGTATTTTGAAGATCGAAGGCCTTCGTCTAATATGGATCCTTACCTAGTTACCTCCATGATTGCTGAAACCACCATCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0003824 GO:0004356 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006082 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016211 GO:0016874 GO:0016879 GO:0016880 GO:0022626 GO:0030054 GO:0032991 GO:0042126 GO:0042128 GO:0042221 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0071704 GO:0071941 GO:0071944 GO:1990904 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

353

Amino Acids

38.91

Weight (kDa)

6.2

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gln-synt_N	PF03951	54 - 97	2.2e-07	Glutamine synthetase, beta-Grasp domain
Gln-synt_C	PF00120	118 - 254	6e-10	Glutamine synthetase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	620
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	563
AccBSI	CCGCTC	1 cut(s)	743
AciI	CCGC	3 cut(s)	684, 741, 926
AclWI	GGATC	7 cut(s)	83, 178, 293, 698, 936, 1010, 1023
AcoI	YGGCCR	2 cut(s)	291, 422
AcuI	CTGAAG	2 cut(s)	384, 739
AcyI	GRCGYC	2 cut(s)	5, 871
AfaI	GTAC	2 cut(s)	470, 760
AfiI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
AgsI	TTSAA	3 cut(s)	602, 821, 989
AjnI	CCWGG	5 cut(s)	110, 121, 451, 583, 717
AluBI	AGCT	5 cut(s)	148, 188, 497, 533, 817
AluI	AGCT	5 cut(s)	148, 188, 497, 533, 817
Alw26I	GTCTC	3 cut(s)	12, 700, 878
AlwI	GGATC	7 cut(s)	83, 178, 293, 698, 936, 1010, 1023
AoxI	GGCC	5 cut(s)	291, 327, 422, 434, 998
ApeKI	GCWGC	3 cut(s)	188, 737, 845
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
Asp700I	GAANNNNTTC	2 cut(s)	210, 1000
AspS9I	GGNCC	4 cut(s)	125, 238, 455, 464
AsuHPI	GGTGA	6 cut(s)	280, 584, 644, 734, 866, 955
AvaII	GGWCC	4 cut(s)	125, 238, 455, 464
AxyI	CCTNAGG	2 cut(s)	222, 459
BalI	TGGCCA	1 cut(s)	424
BamHI	GGATCC	1 cut(s)	1015
BanI	GGYRCC	1 cut(s)	563
BbvI	GCAGC	3 cut(s)	175, 749, 832
BccI	CCATC	3 cut(s)	161, 773, 1061
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	5 cut(s)	112, 123, 453, 585, 719
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	3 cut(s)	12, 700, 878
BfaI	CTAG	3 cut(s)	174, 428, 1025
BfmI	CTRYAG	1 cut(s)	894
BfuAI	ACCTGC	1 cut(s)	620
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	4 cut(s)	189, 738, 741, 846
BlsI	GCNGC	4 cut(s)	190, 739, 742, 847
Bme1390I	CCNGG	5 cut(s)	112, 123, 453, 585, 719
Bme18I	GGWCC	4 cut(s)	125, 238, 455, 464
BmgT120I	GGNCC	4 cut(s)	125, 238, 455, 464
BmiI	GGNNCC	4 cut(s)	240, 465, 565, 1017
BmrFI	CCNGG	5 cut(s)	112, 123, 453, 585, 719
BmrI	ACTGGG	1 cut(s)	888
BmsI	GCATC	3 cut(s)	268, 508, 947
BmuI	ACTGGG	1 cut(s)	888
BpuEI	CTTGAG	1 cut(s)	683
Bsa29I	ATCGAT	1 cut(s)	767
BsaHI	GRCGYC	2 cut(s)	5, 871
BsaJI	CCNNGG	2 cut(s)	371, 718
BsaWI	WCCGGW	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	927, 957
Bsc4I	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	3 cut(s)	128, 792, 883
Bse21I	CCTNAGG	2 cut(s)	222, 459
Bse3DI	GCAATG	1 cut(s)	840
BseBI	CCWGG	5 cut(s)	112, 123, 453, 585, 719
BseCI	ATCGAT	1 cut(s)	767
BseDI	CCNNGG	2 cut(s)	371, 718
BseGI	GGATG	2 cut(s)	346, 1053
BseLI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	4 cut(s)	30, 236, 473, 666
BseNI	ACTGG	3 cut(s)	128, 792, 883
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	175, 749, 832
BsgI	GTGCAG	3 cut(s)	498, 507, 648
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	5 cut(s)	293, 329, 424, 436, 1000
BshNI	GGYRCC	1 cut(s)	563
BshVI	ATCGAT	1 cut(s)	767
BsiEI	CGRYCG	1 cut(s)	294
BsiSI	CCGG	4 cut(s)	192, 290, 294, 546
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
BsmAI	GTCTC	3 cut(s)	12, 700, 878
BsmBI	CGTCTC	2 cut(s)	12, 878
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	5 cut(s)	293, 329, 424, 436, 1000
BspACI	CCGC	3 cut(s)	684, 741, 926
BspANI	GGCC	5 cut(s)	293, 329, 424, 436, 1000
BspCNI	CTCAG	4 cut(s)	29, 235, 472, 667
BspDI	ATCGAT	1 cut(s)	767
BspLI	GGNNCC	4 cut(s)	240, 465, 565, 1017
BspMAI	CTGCAG	1 cut(s)	898
BspMI	ACCTGC	1 cut(s)	620
BspPI	GGATC	7 cut(s)	83, 178, 293, 698, 936, 1010, 1023
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	743
BsrDI	GCAATG	1 cut(s)	840
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	3 cut(s)	128, 792, 883
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	371, 718
BssNI	GRCGYC	2 cut(s)	5, 871
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	5 cut(s)	112, 123, 453, 585, 719
Bst4CI	ACNGT	2 cut(s)	468, 616
Bst6I	CTCTTC	2 cut(s)	360, 949
BstACI	GRCGYC	2 cut(s)	5, 871
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstDEI	CTNAG	4 cut(s)	16, 222, 459, 675
BstF5I	GGATG	2 cut(s)	346, 1053
BstMAI	GTCTC	3 cut(s)	12, 700, 878
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 494
BstNI	CCWGG	5 cut(s)	112, 123, 453, 585, 719
BstSCI	CCNGG	5 cut(s)	110, 121, 451, 583, 717
BstSFI	CTRYAG	1 cut(s)	894
BstV1I	GCAGC	3 cut(s)	175, 749, 832
BstX2I	RGATCY	4 cut(s)	19, 170, 298, 1015
BstXI	CCANNNNNNTGG	1 cut(s)	432
BstYI	RGATCY	4 cut(s)	19, 170, 298, 1015
BstZI	CGGCCG	1 cut(s)	291
Bsu15I	ATCGAT	1 cut(s)	767
Bsu36I	CCTNAGG	2 cut(s)	222, 459
BsuRI	GGCC	5 cut(s)	293, 329, 424, 436, 1000
BsuTUI	ATCGAT	1 cut(s)	767
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	346, 1053
BtsIMutI	CAGTG	1 cut(s)	876
BveI	ACCTGC	1 cut(s)	620
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	4 cut(s)	125, 238, 455, 464
ClaI	ATCGAT	1 cut(s)	767
CseI	GACGC	1 cut(s)	860
Csp6I	GTAC	2 cut(s)	469, 759
CviAII	CATG	3 cut(s)	580, 887, 1036
CviQI	GTAC	2 cut(s)	469, 759
DdeI	CTNAG	4 cut(s)	16, 222, 459, 675
EaeI	YGGCCR	2 cut(s)	291, 422
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	360, 949
EarI	CTCTTC	2 cut(s)	360, 949
EciI	GGCGGA	1 cut(s)	941
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	1000
Eco47I	GGWCC	4 cut(s)	125, 238, 455, 464
Eco52I	CGGCCG	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	384, 739
Eco81I	CCTNAGG	2 cut(s)	222, 459
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	5 cut(s)	110, 121, 451, 583, 717
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
Esp3I	CGTCTC	2 cut(s)	12, 878
FaeI	CATG	3 cut(s)	583, 890, 1039
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	3 cut(s)	579, 886, 1035
FauNDI	CATATG	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	4 cut(s)	189, 738, 741, 846
FokI	GGATG	2 cut(s)	333, 1040
Fsp4HI	GCNGC	4 cut(s)	189, 738, 741, 846
FspBI	CTAG	3 cut(s)	174, 428, 1025
GluI	GCNGC	4 cut(s)	189, 738, 741, 846
HaeIII	GGCC	5 cut(s)	293, 329, 424, 436, 1000
HapII	CCGG	4 cut(s)	192, 290, 294, 546
HgaI	GACGC	1 cut(s)	860
Hin1I	GRCGYC	2 cut(s)	5, 871
Hin1II	CATG	3 cut(s)	583, 890, 1039
HindIII	AAGCTT	4 cut(s)	146, 495, 531, 815
HpaII	CCGG	4 cut(s)	192, 290, 294, 546
HphI	GGTGA	6 cut(s)	280, 584, 644, 734, 866, 955
Hpy188I	TCNGA	3 cut(s)	19, 43, 309
Hpy188III	TCNNGA	4 cut(s)	87, 247, 506, 662
HpyAV	CCTTC	6 cut(s)	244, 352, 851, 965, 990, 1011
HpyCH4III	ACNGT	2 cut(s)	468, 616
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	4 cut(s)	479, 488, 629, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 494
HpyF3I	CTNAG	4 cut(s)	16, 222, 459, 675
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	2 cut(s)	5, 871
Hsp92II	CATG	3 cut(s)	583, 890, 1039
Ksp22I	TGATCA	1 cut(s)	634
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	734, 935
Lsp1109I	GCAGC	3 cut(s)	175, 749, 832
LweI	GCATC	3 cut(s)	268, 508, 947
MaeI	CTAG	3 cut(s)	174, 428, 1025
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	3 cut(s)	506, 653, 1027
MbiI	CCGCTC	1 cut(s)	743
MboII	GAAGA	4 cut(s)	331, 377, 966, 1001
MflI	RGATCY	4 cut(s)	19, 170, 298, 1015
MlsI	TGGCCA	1 cut(s)	424
MluCI	AATT	2 cut(s)	303, 638
MluNI	TGGCCA	1 cut(s)	424
MmeI	TCCRAC	2 cut(s)	164, 332
MnlI	CCTC	9 cut(s)	21, 231, 447, 468, 660, 765, 776, 861, 1042
Mox20I	TGGCCA	1 cut(s)	424
MroXI	GAANNNNTTC	2 cut(s)	210, 1000
MscI	TGGCCA	1 cut(s)	424
MseI	TTAA	3 cut(s)	234, 405, 798
MslI	CAYNNNNRTG	2 cut(s)	266, 351
Msp20I	TGGCCA	1 cut(s)	424
MspI	CCGG	4 cut(s)	192, 290, 294, 546
MspR9I	CCNGG	5 cut(s)	112, 123, 453, 585, 719
MvaI	CCWGG	5 cut(s)	112, 123, 453, 585, 719
MwoI	GCNNNNNNNGC	2 cut(s)	485, 494
NdeI	CATATG	1 cut(s)	71
NlaIII	CATG	3 cut(s)	583, 890, 1039
NlaIV	GGNNCC	4 cut(s)	240, 465, 565, 1017
NmuCI	GTSAC	1 cut(s)	506
PaqCI	CACCTGC	1 cut(s)	620
PceI	AGGCCT	1 cut(s)	1000
PciSI	GCTCTTC	1 cut(s)	360
PdmI	GAANNNNTTC	2 cut(s)	210, 1000
PflFI	GACNNNGTC	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	190, 739, 742, 847
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	5 cut(s)	110, 121, 451, 583, 717
PspGI	CCWGG	5 cut(s)	110, 121, 451, 583, 717
PspN4I	GGNNCC	4 cut(s)	240, 465, 565, 1017
PspPI	GGNCC	4 cut(s)	125, 238, 455, 464
PspPPI	RGGWCCY	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	898
PsuI	RGATCY	4 cut(s)	19, 170, 298, 1015
PsyI	GACNNNGTC	1 cut(s)	512
RsaI	GTAC	2 cut(s)	470, 760
RsaNI	GTAC	2 cut(s)	469, 759
RseI	CAYNNNNRTG	2 cut(s)	266, 351
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	234, 405, 798
SatI	GCNGC	4 cut(s)	189, 738, 741, 846
Sau96I	GGNCC	4 cut(s)	125, 238, 455, 464
ScrFI	CCNGG	5 cut(s)	112, 123, 453, 585, 719
SfaNI	GCATC	3 cut(s)	268, 508, 947
SfcI	CTRYAG	1 cut(s)	894
SinI	GGWCC	4 cut(s)	125, 238, 455, 464
SmiMI	CAYNNNNRTG	2 cut(s)	266, 351
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
Sse9I	AATT	2 cut(s)	303, 638
SseBI	AGGCCT	1 cut(s)	1000
SsiI	CCGC	3 cut(s)	684, 741, 926
SspI	AATATT	1 cut(s)	231
SspMI	CTAG	3 cut(s)	174, 428, 1025
StuI	AGGCCT	1 cut(s)	1000
StyD4I	CCNGG	5 cut(s)	110, 121, 451, 583, 717
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	468, 616
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	5 cut(s)	342, 516, 702, 767, 994
TasI	AATT	2 cut(s)	303, 638
TatI	WGTACW	1 cut(s)	758
TauI	GCSGC	1 cut(s)	743
Tru1I	TTAA	3 cut(s)	234, 405, 798
Tru9I	TTAA	3 cut(s)	234, 405, 798
TscAI	CASTG	1 cut(s)	883
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	3 cut(s)	188, 737, 845
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	1 cut(s)	903
TspGWI	ACGGA	1 cut(s)	977
TspRI	CASTG	1 cut(s)	883
Tth111I	GACNNNGTC	1 cut(s)	512
VpaK11BI	GGWCC	4 cut(s)	125, 238, 455, 464
XmnI	GAANNNNTTC	2 cut(s)	210, 1000
XspI	CTAG	3 cut(s)	174, 428, 1025
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.