RchiOBHm_Chr4g0446601

glutamine synthetase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
66709876 .. 66713597
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41411

Sequence Viewer

Length: 1068 bp
ATGTCTCTCCTCTCTGATATCATCAACCTCAACCTCTCGGAATCCACCCAGAAGATCATCGCAGAATACATATGGATAGGTGGATCTGGTACGGACTTGAGAAGCAAAGCCAGGACCCTGCCTGGGCCGGTTGAAGACCCAGCAAAGCTACCAAAGTGGAACTACGACGGTTCGAGCACAAACCAAGCTCCAGGGGACGATAGTGAAGTGATCTTATATCCCCAGGCTATTTTCAAGGACCCATTCAGAAGAGGGAGCAATATCTTGGTGATATGCGATGCGTATACGCCGGCCGGAGAGCCGATCCCTACCAACAAGAGGGCAGCTGCTGCCAAGATATTCAGCCACCCCGACGTTGCCAAAGAAGAGCCTTGGTATGGAATTGAGCAGGAGTATACTCTTCTTCAGAAGGATACAAATTGGCCGCTTGGGTGGCCTATTGGTGGCTTCCCTGGTCCACAGGGGCCCTACTACTGTGGTGCAGGAGCAGACAAGGCCTTCGGGCGTGATATAGTTGATGCTCACTACAAGGCCTGCCTCTATGCTGGAATCAATATCAGTGGCATCAATGCCGAGGTTATGCCAGGCCAGTGGGAATTTCAAGTTGGTCCTACTGAAGGTATTGCTGCTGGTGATCAAATATGGGCTGCTCGATACATCCTTGAGAGAATCACAGAAATTGCAGGAGTTGTTCTTTCTTTGGACCCTAAACCAATCAAGGGTGACTGGAACGGTGCCGGTGCTCACTGTAACTACAGTACCAAGTCGATGAGAAATGATGGTGGGATTGAAGTAATCAAGAAGGCCATTGAAAAACTGAGCTTGCGTCACAAGGAGCACATTGCTGCTTATGGAGAAGGCAACGAGAGGAGACTGACTGGTCACCATGAGACCGCTGACATCAACACTTTCTCTTGGGGAGTGGCGAATAGGGGTGCCTCCGTCCGTGTTGGTCGTGATACCGAAAAACAAGGCAAAGGGTATTTTGAGGACAGAAGGCCAGCGTCCAACATGGATCCCTATGTTGTGACTTCCATGATTGCCGAGACCACCATTCTCACCAAGTAG

Protein Analysis

355

Amino Acids

38.87

Weight (kDa)

5.73

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 32 - 97 5.5e-08 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 124 - 347 1.8e-13 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 879
AccB1I GGYRCC 2 cut(s) 734, 935
AccI GTMKAC 2 cut(s) 284, 395
AciI CCGC 2 cut(s) 425, 894
AclWI GGATC 4 cut(s) 91, 298, 1010, 1023
AcoI YGGCCR 2 cut(s) 291, 422
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 2 cut(s) 389, 636
AfaI GTAC 2 cut(s) 91, 760
AfiI CCNNNNNNNGG 6 cut(s) 123, 318, 377, 443, 617, 719
AgsI TTSAA 5 cut(s) 134, 235, 602, 791, 812
AjnI CCWGG 6 cut(s) 110, 121, 190, 222, 451, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 4 cut(s) 148, 188, 326, 822
AluI AGCT 4 cut(s) 148, 188, 326, 822
Alw21I GWGCWC 3 cut(s) 179, 745, 840
Alw26I GTCTC 4 cut(s) 9, 865, 884, 1040
AlwI GGATC 4 cut(s) 91, 298, 1010, 1023
AlwNI CAGNNNCTG 1 cut(s) 329
ApaI GGGCCC 1 cut(s) 468
ApeKI GCWGC 6 cut(s) 323, 326, 329, 626, 647, 845
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AspS9I GGNCC 8 cut(s) 114, 125, 238, 455, 464, 465, 608, 703
AsuHPI GGTGA 5 cut(s) 280, 644, 734, 875, 1051
AvaII GGWCC 5 cut(s) 114, 238, 455, 608, 703
BaeGI GKGCMC 1 cut(s) 468
BaeI ACNNNNGTAYC 2 cut(s) 742, 775
BamHI GGATCC 1 cut(s) 1015
BanI GGYRCC 2 cut(s) 734, 935
BanII GRGCYC 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 3 cut(s) 179, 745, 840
BbvI GCAGC 6 cut(s) 313, 316, 335, 613, 634, 832
BccI CCATC 1 cut(s) 773
BciT130I CCWGG 6 cut(s) 112, 123, 192, 224, 453, 585
BciVI GTATCC 1 cut(s) 406
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 4 cut(s) 9, 865, 884, 1040
BfmI CTRYAG 1 cut(s) 754
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 7 cut(s) 324, 327, 330, 425, 627, 648, 846
BlsI GCNGC 7 cut(s) 325, 328, 331, 426, 628, 649, 847
Bme1390I CCNGG 6 cut(s) 112, 123, 192, 224, 453, 585
Bme18I GGWCC 5 cut(s) 114, 238, 455, 608, 703
BmgT120I GGNCC 8 cut(s) 114, 125, 238, 455, 464, 465, 608, 703
BmiI GGNNCC 8 cut(s) 116, 240, 465, 466, 705, 736, 937, 1017
BmrFI CCNGG 6 cut(s) 112, 123, 192, 224, 453, 585
BmsI GCATC 3 cut(s) 268, 508, 573
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 118, 683
BsaI GGTCTC 2 cut(s) 884, 1040
BsaJI CCNNGG 6 cut(s) 122, 191, 222, 371, 451, 573
Bsc4I CCNNNNNNNGG 6 cut(s) 123, 318, 377, 443, 617, 719
Bse118I RCCGGY 3 cut(s) 127, 289, 737
Bse1I ACTGG 3 cut(s) 589, 731, 883
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 6 cut(s) 112, 123, 192, 224, 453, 585
BseDI CCNNGG 6 cut(s) 122, 191, 222, 371, 451, 573
BseGI GGATG 1 cut(s) 657
BseLI CCNNNNNNNGG 6 cut(s) 123, 318, 377, 443, 617, 719
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 1 cut(s) 809
BseNI ACTGG 3 cut(s) 589, 731, 883
BseRI GAGGAG 1 cut(s) 883
BseSI GKGCMC 1 cut(s) 468
BseX3I CGGCCG 1 cut(s) 291
BseXI GCAGC 6 cut(s) 313, 316, 335, 613, 634, 832
BseYI CCCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 501
Bsh1285I CGRYCG 1 cut(s) 294
BshNI GGYRCC 2 cut(s) 734, 935
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 3 cut(s) 179, 745, 840
BsiSI CCGG 4 cut(s) 128, 290, 294, 738
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 6 cut(s) 123, 318, 377, 443, 617, 719
BsmAI GTCTC 4 cut(s) 9, 865, 884, 1040
BsmFI GGGAC 1 cut(s) 209
Bso31I GGTCTC 2 cut(s) 884, 1040
Bsp120I GGGCCC 1 cut(s) 464
Bsp1286I GDGCHC 4 cut(s) 179, 468, 745, 840
Bsp143I GATC 6 cut(s) 54, 83, 210, 303, 634, 1015
BspACI CCGC 2 cut(s) 425, 894
BspCNI CTCAG 1 cut(s) 810
BspLI GGNNCC 8 cut(s) 116, 240, 465, 466, 705, 736, 937, 1017
BspPI GGATC 4 cut(s) 91, 298, 1010, 1023
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 2 cut(s) 734, 935
BspTNI GGTCTC 2 cut(s) 884, 1040
BsrDI GCAATG 1 cut(s) 840
BsrFI RCCGGY 3 cut(s) 127, 289, 737
BsrI ACTGG 3 cut(s) 589, 731, 883
BssAI RCCGGY 3 cut(s) 127, 289, 737
BssECI CCNNGG 6 cut(s) 122, 191, 222, 371, 451, 573
BssMI GATC 6 cut(s) 54, 83, 210, 303, 634, 1015
BssNAI GTATAC 2 cut(s) 285, 396
BssT1I CCWWGG 1 cut(s) 371
Bst1107I GTATAC 2 cut(s) 285, 396
Bst2UI CCWGG 6 cut(s) 112, 123, 192, 224, 453, 585
Bst4CI ACNGT 5 cut(s) 170, 476, 734, 749, 758
Bst6I CTCTTC 3 cut(s) 244, 360, 405
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 4 cut(s) 291, 535, 824, 1002
BstDEI CTNAG 1 cut(s) 818
BstEII GGTNACC 1 cut(s) 881
BstENI CCTNNNNNAGG 1 cut(s) 615
BstF5I GGATG 1 cut(s) 657
BstKTI GATC 6 cut(s) 57, 86, 213, 306, 637, 1018
BstMAI GTCTC 4 cut(s) 9, 865, 884, 1040
BstMBI GATC 6 cut(s) 54, 83, 210, 303, 634, 1015
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 3 cut(s) 329, 433, 494
BstNI CCWGG 6 cut(s) 112, 123, 192, 224, 453, 585
BstPI GGTNACC 1 cut(s) 881
BstSCI CCNGG 6 cut(s) 110, 121, 190, 222, 451, 583
BstSFI CTRYAG 1 cut(s) 754
BstSLI GKGCMC 1 cut(s) 468
BstV1I GCAGC 6 cut(s) 313, 316, 335, 613, 634, 832
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 2 cut(s) 83, 1015
BstXI CCANNNNNNTGG 1 cut(s) 591
BstYI RGATCY 2 cut(s) 83, 1015
BstZ17I GTATAC 2 cut(s) 285, 396
BstZI CGGCCG 1 cut(s) 291
BsuI GTATCC 1 cut(s) 406
BtgZI GCGATG 2 cut(s) 43, 291
BtsCI GGATG 1 cut(s) 657
BtsIMutI CAGTG 3 cut(s) 565, 596, 745
Cac8I GCNNGC 4 cut(s) 291, 535, 824, 1002
CaiI CAGNNNCTG 1 cut(s) 329
Cfr10I RCCGGY 3 cut(s) 127, 289, 737
Cfr13I GGNCC 8 cut(s) 114, 125, 238, 455, 464, 465, 608, 703
CseI GACGC 2 cut(s) 815, 993
Csp6I GTAC 2 cut(s) 90, 759
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 3 cut(s) 887, 1012, 1036
CviQI GTAC 2 cut(s) 90, 759
DdeI CTNAG 1 cut(s) 818
DpnI GATC 6 cut(s) 56, 85, 212, 305, 636, 1017
DpnII GATC 6 cut(s) 54, 83, 210, 303, 634, 1015
DrdI GACNNNNNNGTC 1 cut(s) 879
DseDI GACNNNNNNGTC 1 cut(s) 879
EaeI YGGCCR 2 cut(s) 291, 422
EagI CGGCCG 1 cut(s) 291
Eam1104I CTCTTC 3 cut(s) 244, 360, 405
EarI CTCTTC 3 cut(s) 244, 360, 405
EclXI CGGCCG 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 371
Eco147I AGGCCT 2 cut(s) 497, 533
Eco24I GRGCYC 1 cut(s) 468
Eco31I GGTCTC 2 cut(s) 884, 1040
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 5 cut(s) 114, 238, 455, 608, 703
Eco52I CGGCCG 1 cut(s) 291
Eco57I CTGAAG 2 cut(s) 389, 636
Eco91I GGTNACC 1 cut(s) 881
EcoNI CCTNNNNNAGG 1 cut(s) 615
EcoO109I RGGNCCY 4 cut(s) 114, 238, 464, 465
EcoO65I GGTNACC 1 cut(s) 881
EcoRII CCWGG 6 cut(s) 110, 121, 190, 222, 451, 583
EcoRV GATATC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 3 cut(s) 890, 1015, 1039
FaqI GGGAC 1 cut(s) 209
FatI CATG 3 cut(s) 886, 1011, 1035
FauNDI CATATG 1 cut(s) 71
FbaI TGATCA 1 cut(s) 634
FblI GTMKAC 2 cut(s) 284, 395
Fnu4HI GCNGC 7 cut(s) 324, 327, 330, 425, 627, 648, 846
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 7 cut(s) 324, 327, 330, 425, 627, 648, 846
GluI GCNGC 7 cut(s) 324, 327, 330, 425, 627, 648, 846
GsaI CCCAGC 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 174
HapII CCGG 4 cut(s) 128, 290, 294, 738
HgaI GACGC 2 cut(s) 815, 993
Hin1II CATG 3 cut(s) 890, 1015, 1039
HinfI GANTC 3 cut(s) 41, 549, 669
HpaII CCGG 4 cut(s) 128, 290, 294, 738
HphI GGTGA 5 cut(s) 280, 644, 734, 875, 1051
Hpy166II GTNNAC 3 cut(s) 285, 396, 458
Hpy188I TCNGA 4 cut(s) 16, 40, 248, 408
Hpy188III TCNNGA 2 cut(s) 799, 956
Hpy8I GTNNAC 3 cut(s) 285, 396, 458
Hpy99I CGWCG 2 cut(s) 170, 356
HpyAV CCTTC 6 cut(s) 403, 508, 611, 796, 851, 990
HpyCH4III ACNGT 5 cut(s) 170, 476, 734, 749, 758
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 2 cut(s) 482, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 433, 494
HpyF3I CTNAG 1 cut(s) 818
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 3 cut(s) 890, 1015, 1039
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 6 cut(s) 54, 83, 210, 303, 634, 1015
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 4 cut(s) 193, 255, 485, 835
Lsp1109I GCAGC 6 cut(s) 313, 316, 335, 613, 634, 832
LweI GCATC 3 cut(s) 268, 508, 573
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 5 cut(s) 722, 749, 827, 881, 1027
MalI GATC 6 cut(s) 56, 85, 212, 305, 636, 1017
MboI GATC 6 cut(s) 54, 83, 210, 303, 634, 1015
MboII GAAGA 6 cut(s) 64, 146, 261, 377, 392, 395
MflI RGATCY 2 cut(s) 83, 1015
MhlI GDGCHC 4 cut(s) 179, 468, 745, 840
MluCI AATT 4 cut(s) 381, 418, 596, 678
MmeI TCCRAC 1 cut(s) 1032
MroNI GCCGGC 1 cut(s) 289
MspA1I CMGCKG 2 cut(s) 326, 896
MspI CCGG 4 cut(s) 128, 290, 294, 738
MspR9I CCNGG 6 cut(s) 112, 123, 192, 224, 453, 585
MvaI CCWGG 6 cut(s) 112, 123, 192, 224, 453, 585
MwoI GCNNNNNNNGC 3 cut(s) 329, 433, 494
NaeI GCCGGC 1 cut(s) 291
NdeI CATATG 1 cut(s) 71
NdeII GATC 6 cut(s) 54, 83, 210, 303, 634, 1015
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 3 cut(s) 890, 1015, 1039
NlaIV GGNNCC 8 cut(s) 116, 240, 465, 466, 705, 736, 937, 1017
NmeAIII GCCGAG 1 cut(s) 598
NmuCI GTSAC 4 cut(s) 722, 827, 881, 1027
PceI AGGCCT 2 cut(s) 497, 533
PciSI GCTCTTC 1 cut(s) 360
PdiI GCCGGC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 41, 549, 669
PkrI GCNGC 7 cut(s) 325, 328, 331, 426, 628, 649, 847
PpuMI RGGWCCY 2 cut(s) 114, 238
Psp5II RGGWCCY 2 cut(s) 114, 238
Psp6I CCWGG 6 cut(s) 110, 121, 190, 222, 451, 583
PspEI GGTNACC 1 cut(s) 881
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 6 cut(s) 110, 121, 190, 222, 451, 583
PspN4I GGNNCC 8 cut(s) 116, 240, 465, 466, 705, 736, 937, 1017
PspOMI GGGCCC 1 cut(s) 464
PspPI GGNCC 8 cut(s) 114, 125, 238, 455, 464, 465, 608, 703
PspPPI RGGWCCY 2 cut(s) 114, 238
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 83, 1015
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 2 cut(s) 91, 760
RsaNI GTAC 2 cut(s) 90, 759
SapI GCTCTTC 1 cut(s) 360
SatI GCNGC 7 cut(s) 324, 327, 330, 425, 627, 648, 846
Sau3AI GATC 6 cut(s) 54, 83, 210, 303, 634, 1015
Sau96I GGNCC 8 cut(s) 114, 125, 238, 455, 464, 465, 608, 703
ScrFI CCNGG 6 cut(s) 112, 123, 192, 224, 453, 585
SduI GDGCHC 4 cut(s) 179, 468, 745, 840
SfaNI GCATC 3 cut(s) 268, 508, 573
SfcI CTRYAG 1 cut(s) 754
SinI GGWCC 5 cut(s) 114, 238, 455, 608, 703
SmlI CTYRAG 2 cut(s) 97, 662
SmoI CTYRAG 2 cut(s) 97, 662
Sse9I AATT 4 cut(s) 381, 418, 596, 678
SseBI AGGCCT 2 cut(s) 497, 533
SsiI CCGC 2 cut(s) 425, 894
StuI AGGCCT 2 cut(s) 497, 533
StyD4I CCNGG 6 cut(s) 110, 121, 190, 222, 451, 583
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 5 cut(s) 170, 476, 734, 749, 758
TaiI ACGT 1 cut(s) 357
TaqI TCGA 3 cut(s) 173, 652, 767
TasI AATT 4 cut(s) 381, 418, 596, 678
TauI GCSGC 1 cut(s) 427
TfiI GAWTC 3 cut(s) 41, 549, 669
TscAI CASTG 3 cut(s) 565, 596, 752
TseFI GTSAC 4 cut(s) 722, 827, 881, 1027
TseI GCWGC 6 cut(s) 323, 326, 329, 626, 647, 845
Tsp45I GTSAC 4 cut(s) 722, 827, 881, 1027
TspGWI ACGGA 3 cut(s) 107, 931, 935
TspRI CASTG 3 cut(s) 565, 596, 752
VpaK11BI GGWCC 5 cut(s) 114, 238, 455, 608, 703
XagI CCTNNNNNAGG 1 cut(s) 615
XapI RAATTY 1 cut(s) 596
XmiI GTMKAC 2 cut(s) 284, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.