Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000144.1

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Reverse (-)

18630 .. 21742

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000144.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgtctctcctctcggatatcatcaacctcaacctctcggaatccacccagaagatcattgccgaatacatatggataggtggatctggtacggacttgagaagcaaagcaaggactctgcctgggccggttgcagacccagcaaagctaccaaagtggaactacgacgggtcgagtacaaaccaagctccaggggacgatagtgaagtgatcttatatccccaggctgttttcatggacccattcagaagagggagcaatatcttggtgatatgcgatgcgtatacaccggccggagagccgatccctaccaacaagagggcagctgctgccaagatattcagccaccccgacgttgccaaagaagagccttggtatggaattgagcaggagtacactcttcttcagaaggatacaaattggcctcttgggtggcctattggtggcttccccggtccacaggggccctactactgtggtgcaggagcagacaaggccttcgggcgtgatatagttgatgctcattacaaggcctgcctctatgctggaatcaatatcagtggcataaatgctgaggttatgccaggccagtgggaatttcaagttggtcctactgaaggaattgctgctggtgatcaaatatgggctgctcgatacatccttgagagaataacagaaatcgcaggagttgttctttctttggaccctaaaccaatcaagggtgactggaacggtgccggtgctcactgtaactacagtaccaagtcgatgagaaatgatggtgggattgaagtaatcaagaaggccattgaaaaactgagcttgcgtcacaaggagcacattgctgcttatggagaaggcaacgagaggagactgactggtcaccatgagaccgctgacatcaacactttctcttggggagtggcgaataggggtgcctccgtccgtgttggtcgtgataccgaaaaacaaggcaaagggtattttgaggacagaaggccagcgtccaacatggatccctatgttgtgacttccatgattgccgagaccaccattctcaccaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

355

Amino Acids

38.8

Weight (kDa)

5.72

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	879
AccB1I	GGYRCC	2 cut(s)	734, 935
AccI	GTMKAC	1 cut(s)	284
AciI	CCGC	1 cut(s)	894
AclWI	GGATC	4 cut(s)	91, 298, 1010, 1023
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	2 cut(s)	389, 636
AfaI	GTAC	4 cut(s)	91, 178, 395, 760
AfiI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
AgsI	TTSAA	3 cut(s)	602, 791, 812
AjnI	CCWGG	4 cut(s)	121, 190, 222, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	4 cut(s)	148, 188, 326, 822
AluI	AGCT	4 cut(s)	148, 188, 326, 822
Alw21I	GWGCWC	2 cut(s)	745, 840
Alw26I	GTCTC	4 cut(s)	9, 865, 884, 1040
AlwI	GGATC	4 cut(s)	91, 298, 1010, 1023
AlwNI	CAGNNNCTG	1 cut(s)	329
ApaI	GGGCCC	1 cut(s)	468
ApeKI	GCWGC	6 cut(s)	323, 326, 329, 626, 647, 845
ApoI	RAATTY	1 cut(s)	596
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspS9I	GGNCC	7 cut(s)	125, 238, 455, 464, 465, 608, 703
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	5 cut(s)	280, 644, 734, 875, 1051
AvaII	GGWCC	4 cut(s)	238, 455, 608, 703
BaeGI	GKGCMC	1 cut(s)	468
BaeI	ACNNNNGTAYC	2 cut(s)	742, 775
BamHI	GGATCC	1 cut(s)	1015
BanI	GGYRCC	2 cut(s)	734, 935
BanII	GRGCYC	1 cut(s)	468
Bbv12I	GWGCWC	2 cut(s)	745, 840
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	6 cut(s)	313, 316, 335, 613, 634, 832
BccI	CCATC	1 cut(s)	773
BciT130I	CCWGG	4 cut(s)	123, 192, 224, 585
BciVI	GTATCC	1 cut(s)	406
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	4 cut(s)	9, 865, 884, 1040
BfmI	CTRYAG	1 cut(s)	754
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	6 cut(s)	324, 327, 330, 627, 648, 846
BlsI	GCNGC	6 cut(s)	325, 328, 331, 628, 649, 847
Bme1390I	CCNGG	5 cut(s)	123, 192, 224, 453, 585
Bme18I	GGWCC	4 cut(s)	238, 455, 608, 703
BmgT120I	GGNCC	7 cut(s)	125, 238, 455, 464, 465, 608, 703
BmiI	GGNNCC	7 cut(s)	240, 465, 466, 705, 736, 937, 1017
BmrFI	CCNGG	5 cut(s)	123, 192, 224, 453, 585
BmsI	GCATC	2 cut(s)	268, 508
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	2 cut(s)	118, 683
BpuMI	CCSGG	1 cut(s)	453
BsaI	GGTCTC	2 cut(s)	884, 1040
BsaJI	CCNNGG	5 cut(s)	122, 191, 222, 371, 451
Bsc4I	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
Bse118I	RCCGGY	3 cut(s)	127, 289, 737
Bse1I	ACTGG	3 cut(s)	589, 731, 883
Bse3DI	GCAATG	2 cut(s)	57, 840
BseBI	CCWGG	4 cut(s)	123, 192, 224, 585
BseDI	CCNNGG	5 cut(s)	122, 191, 222, 371, 451
BseGI	GGATG	1 cut(s)	657
BseLI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
BseMI	GCAATG	2 cut(s)	57, 840
BseMII	CTCAG	2 cut(s)	564, 809
BseNI	ACTGG	3 cut(s)	589, 731, 883
BseRI	GAGGAG	1 cut(s)	883
BseSI	GKGCMC	1 cut(s)	468
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	6 cut(s)	313, 316, 335, 613, 634, 832
BseYI	CCCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	294
BshNI	GGYRCC	2 cut(s)	734, 935
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	745, 840
BsiSI	CCGG	5 cut(s)	128, 290, 294, 453, 738
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
BsmAI	GTCTC	4 cut(s)	9, 865, 884, 1040
BsmFI	GGGAC	1 cut(s)	209
Bso31I	GGTCTC	2 cut(s)	884, 1040
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	468, 745, 840
Bsp143I	GATC	6 cut(s)	54, 83, 210, 303, 634, 1015
BspACI	CCGC	1 cut(s)	894
BspCNI	CTCAG	2 cut(s)	565, 810
BspLI	GGNNCC	7 cut(s)	240, 465, 466, 705, 736, 937, 1017
BspPI	GGATC	4 cut(s)	91, 298, 1010, 1023
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	2 cut(s)	734, 935
BspTNI	GGTCTC	2 cut(s)	884, 1040
BsrDI	GCAATG	2 cut(s)	57, 840
BsrFI	RCCGGY	3 cut(s)	127, 289, 737
BsrI	ACTGG	3 cut(s)	589, 731, 883
BssAI	RCCGGY	3 cut(s)	127, 289, 737
BssECI	CCNNGG	5 cut(s)	122, 191, 222, 371, 451
BssMI	GATC	6 cut(s)	54, 83, 210, 303, 634, 1015
BssNAI	GTATAC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	371
Bst1107I	GTATAC	1 cut(s)	285
Bst2UI	CCWGG	4 cut(s)	123, 192, 224, 585
Bst4CI	ACNGT	4 cut(s)	476, 734, 749, 758
Bst6I	CTCTTC	3 cut(s)	244, 360, 405
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	3 cut(s)	535, 824, 1002
BstDEI	CTNAG	2 cut(s)	573, 818
BstEII	GGTNACC	1 cut(s)	881
BstENI	CCTNNNNNAGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	657
BstKTI	GATC	6 cut(s)	57, 86, 213, 306, 637, 1018
BstMAI	GTCTC	4 cut(s)	9, 865, 884, 1040
BstMBI	GATC	6 cut(s)	54, 83, 210, 303, 634, 1015
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 329, 494
BstNI	CCWGG	4 cut(s)	123, 192, 224, 585
BstPI	GGTNACC	1 cut(s)	881
BstSCI	CCNGG	5 cut(s)	121, 190, 222, 451, 583
BstSFI	CTRYAG	1 cut(s)	754
BstSLI	GKGCMC	1 cut(s)	468
BstV1I	GCAGC	6 cut(s)	313, 316, 335, 613, 634, 832
BstX2I	RGATCY	2 cut(s)	83, 1015
BstXI	CCANNNNNNTGG	1 cut(s)	591
BstYI	RGATCY	2 cut(s)	83, 1015
BstZ17I	GTATAC	1 cut(s)	285
BstZI	CGGCCG	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	406
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	657
BtsIMutI	CAGTG	3 cut(s)	565, 596, 745
Cac8I	GCNNGC	3 cut(s)	535, 824, 1002
CaiI	CAGNNNCTG	1 cut(s)	329
Cfr10I	RCCGGY	3 cut(s)	127, 289, 737
Cfr13I	GGNCC	7 cut(s)	125, 238, 455, 464, 465, 608, 703
CseI	GACGC	2 cut(s)	815, 993
Csp6I	GTAC	4 cut(s)	90, 177, 394, 759
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	4 cut(s)	235, 887, 1012, 1036
CviQI	GTAC	4 cut(s)	90, 177, 394, 759
DdeI	CTNAG	2 cut(s)	573, 818
DpnI	GATC	6 cut(s)	56, 85, 212, 305, 636, 1017
DpnII	GATC	6 cut(s)	54, 83, 210, 303, 634, 1015
DrdI	GACNNNNNNGTC	1 cut(s)	879
DseDI	GACNNNNNNGTC	1 cut(s)	879
EaeI	YGGCCR	1 cut(s)	291
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	3 cut(s)	244, 360, 405
EarI	CTCTTC	3 cut(s)	244, 360, 405
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	371
Eco147I	AGGCCT	2 cut(s)	497, 533
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	2 cut(s)	884, 1040
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	4 cut(s)	238, 455, 608, 703
Eco52I	CGGCCG	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	389, 636
Eco91I	GGTNACC	1 cut(s)	881
EcoNI	CCTNNNNNAGG	1 cut(s)	615
EcoO109I	RGGNCCY	2 cut(s)	464, 465
EcoO65I	GGTNACC	1 cut(s)	881
EcoRII	CCWGG	4 cut(s)	121, 190, 222, 583
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	4 cut(s)	238, 890, 1015, 1039
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	4 cut(s)	234, 886, 1011, 1035
FauNDI	CATATG	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	6 cut(s)	324, 327, 330, 627, 648, 846
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	6 cut(s)	324, 327, 330, 627, 648, 846
GluI	GCNGC	6 cut(s)	324, 327, 330, 627, 648, 846
GsaI	CCCAGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	174
HapII	CCGG	5 cut(s)	128, 290, 294, 453, 738
HgaI	GACGC	2 cut(s)	815, 993
Hin1II	CATG	4 cut(s)	238, 890, 1015, 1039
HinfI	GANTC	3 cut(s)	41, 115, 549
HpaII	CCGG	5 cut(s)	128, 290, 294, 453, 738
HphI	GGTGA	5 cut(s)	280, 644, 734, 875, 1051
Hpy166II	GTNNAC	3 cut(s)	285, 396, 458
Hpy188I	TCNGA	4 cut(s)	16, 40, 248, 408
Hpy188III	TCNNGA	2 cut(s)	799, 956
Hpy8I	GTNNAC	3 cut(s)	285, 396, 458
Hpy99I	CGWCG	2 cut(s)	170, 356
HpyAV	CCTTC	6 cut(s)	403, 508, 611, 796, 851, 990
HpyCH4III	ACNGT	4 cut(s)	476, 734, 749, 758
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	134, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 329, 494
HpyF3I	CTNAG	2 cut(s)	573, 818
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	4 cut(s)	238, 890, 1015, 1039
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	6 cut(s)	54, 83, 210, 303, 634, 1015
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	4 cut(s)	193, 255, 485, 835
Lsp1109I	GCAGC	6 cut(s)	313, 316, 335, 613, 634, 832
LweI	GCATC	2 cut(s)	268, 508
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	5 cut(s)	722, 749, 827, 881, 1027
MalI	GATC	6 cut(s)	56, 85, 212, 305, 636, 1017
MboI	GATC	6 cut(s)	54, 83, 210, 303, 634, 1015
MboII	GAAGA	5 cut(s)	64, 261, 377, 392, 395
MflI	RGATCY	2 cut(s)	83, 1015
MhlI	GDGCHC	3 cut(s)	468, 745, 840
MluCI	AATT	4 cut(s)	381, 418, 596, 621
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	1032
MspA1I	CMGCKG	2 cut(s)	326, 896
MspI	CCGG	5 cut(s)	128, 290, 294, 453, 738
MspR9I	CCNGG	5 cut(s)	123, 192, 224, 453, 585
MvaI	CCWGG	4 cut(s)	123, 192, 224, 585
MwoI	GCNNNNNNNGC	3 cut(s)	140, 329, 494
NciI	CCSGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	6 cut(s)	54, 83, 210, 303, 634, 1015
NlaIII	CATG	4 cut(s)	238, 890, 1015, 1039
NlaIV	GGNNCC	7 cut(s)	240, 465, 466, 705, 736, 937, 1017
NmuCI	GTSAC	4 cut(s)	722, 827, 881, 1027
PceI	AGGCCT	2 cut(s)	497, 533
PciSI	GCTCTTC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	41, 549
PkrI	GCNGC	6 cut(s)	325, 328, 331, 628, 649, 847
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	4 cut(s)	121, 190, 222, 583
PspEI	GGTNACC	1 cut(s)	881
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	4 cut(s)	121, 190, 222, 583
PspN4I	GGNNCC	7 cut(s)	240, 465, 466, 705, 736, 937, 1017
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	7 cut(s)	125, 238, 455, 464, 465, 608, 703
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	83, 1015
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	4 cut(s)	91, 178, 395, 760
RsaNI	GTAC	4 cut(s)	90, 177, 394, 759
SapI	GCTCTTC	1 cut(s)	360
SatI	GCNGC	6 cut(s)	324, 327, 330, 627, 648, 846
Sau3AI	GATC	6 cut(s)	54, 83, 210, 303, 634, 1015
Sau96I	GGNCC	7 cut(s)	125, 238, 455, 464, 465, 608, 703
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	5 cut(s)	123, 192, 224, 453, 585
SduI	GDGCHC	3 cut(s)	468, 745, 840
SetI	ASST	9 cut(s)	30, 36, 82, 150, 190, 328, 357, 579, 824
SfaNI	GCATC	2 cut(s)	268, 508
SfcI	CTRYAG	1 cut(s)	754
SinI	GGWCC	4 cut(s)	238, 455, 608, 703
SmlI	CTYRAG	2 cut(s)	97, 662
SmoI	CTYRAG	2 cut(s)	97, 662
Sse9I	AATT	4 cut(s)	381, 418, 596, 621
SseBI	AGGCCT	2 cut(s)	497, 533
SsiI	CCGC	1 cut(s)	894
StuI	AGGCCT	2 cut(s)	497, 533
StyD4I	CCNGG	5 cut(s)	121, 190, 222, 451, 583
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	4 cut(s)	476, 734, 749, 758
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	3 cut(s)	173, 652, 767
TasI	AATT	4 cut(s)	381, 418, 596, 621
TatI	WGTACW	2 cut(s)	176, 393
TfiI	GAWTC	2 cut(s)	41, 549
TscAI	CASTG	3 cut(s)	565, 596, 752
TseFI	GTSAC	4 cut(s)	722, 827, 881, 1027
TseI	GCWGC	6 cut(s)	323, 326, 329, 626, 647, 845
Tsp45I	GTSAC	4 cut(s)	722, 827, 881, 1027
TspDTI	ATGAA	1 cut(s)	223
TspGWI	ACGGA	3 cut(s)	107, 931, 935
TspRI	CASTG	3 cut(s)	565, 596, 752
VpaK11BI	GGWCC	4 cut(s)	238, 455, 608, 703
XagI	CCTNNNNNAGG	1 cut(s)	615
XapI	RAATTY	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.