AT5G37600

glutamine synthetase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
14933286 .. 14935885
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37600.1

Sequence Viewer

Length: 1071 bp
ATGAGTCTTGTTTCAGATCTCATCAACCTTAACCTCTCAGACTCCACTGACAAAATCATTGCTGAATACATATGGGTTGGTGGTTCTGGAATGGACATGAGAAGCAAAGCCAGGACTCTACCTGGACCAGTGACTGACCCTTCGCAGCTACCAAAGTGGAACTATGATGGTTCAAGCACAGGCCAAGCTCCTGGTGAAGACAGTGAAGTCATCTTATACCCTCAAGCCATATTCAAGGATCCTTTCCGTAGAGGAAACAACATTCTTGTCATGTGCGATGCGTACACTCCCGCGGGTGAACCAATCCCGACTAACAAAAGACACGCTGCGGCTAAGGTCTTTAGCAACCCTGATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCAAGAATACACTTTACTCCAGAAAGATGTGAAGTGGCCTGTTGGTTGGCCTATTGGTGGTTATCCCGGCCCTCAGGGACCGTACTATTGCGGTATTGGAGCAGACAAATCTTTTGGCAGAGATGTTGTTGATTCTCACTACAAGGCCTGCTTATACGCTGGGATCAACATTAGTGGCATCAATGGAGAAGTCATGCCGGGTCAGTGGGAGTTCCAGGTCGGTCCAGCTGTTGGTATCTCGGCTGCTGATGAAATTTGGGTCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTAGTGGTATCTTTTGACCCGAAACCGATTCCCGGTGACTGGAACGGTGCTGGTGCTCACTGCAACTACAGTACCAAGTCAATGAGGGAAGAAGGCGGTTACGAGATCATCAAGAAAGCAATCGATAAATTGGGACTGAGACACAAAGAACACATTGCTGCTTACGGTGAAGGCAATGAGCGTCGTCTCACAGGACACCACGAGACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCCGAGTAGGACGTGATACGGAGAAAGAAGGGAAAGGATACTTTGAGGACAGGAGGCCAGCTTCGAACATGGATCCTTACATTGTCACTTCCATGATTGCAGAGACTACAATCCTCTGGAATCCTTGA

Protein Analysis

356

Amino Acids

39.11

Weight (kDa)

5.28

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 48 - 97 1.3e-08 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 126 - 254 5.4e-12 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AccB7I CCANNNNNTGG 2 cut(s) 377, 617
AccII CGCG 1 cut(s) 293
AciI CCGC 5 cut(s) 291, 293, 329, 477, 783
AclWI GGATC 7 cut(s) 233, 246, 557, 677, 937, 1010, 1023
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 3 cut(s) 284, 470, 760
AfiI CCNNNNNNNGG 5 cut(s) 377, 443, 617, 719, 726
AgsI TTSAA 2 cut(s) 174, 235
AjiI CACGTC 1 cut(s) 956
AjnI CCWGG 4 cut(s) 110, 121, 190, 600
AluBI AGCT 5 cut(s) 148, 188, 362, 614, 1004
AluI AGCT 5 cut(s) 148, 188, 362, 614, 1004
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 4 cut(s) 820, 878, 884, 1040
AlwI GGATC 7 cut(s) 233, 246, 557, 677, 937, 1010, 1023
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 6 cut(s) 181, 422, 434, 454, 531, 998
ApeKI GCWGC 5 cut(s) 145, 326, 359, 629, 845
ApoI RAATTY 1 cut(s) 639
ArsI GACNNNNNNTTYG 4 cut(s) 124, 156, 482, 514
AspS9I GGNCC 4 cut(s) 125, 455, 464, 608
AsuC2I CCSGG 3 cut(s) 453, 585, 720
AsuHPI GGTGA 4 cut(s) 206, 308, 734, 866
AsuII TTCGAA 1 cut(s) 1007
AvaII GGWCC 3 cut(s) 125, 464, 608
AxyI CCTNAGG 1 cut(s) 459
BaeI ACNNNNGTAYC 2 cut(s) 742, 775
BamHI GGATCC 2 cut(s) 238, 1015
BauI CACGAG 1 cut(s) 887
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 5 cut(s) 157, 313, 371, 616, 832
BccI CCATC 1 cut(s) 161
BciT130I CCWGG 4 cut(s) 112, 123, 192, 602
BciVI GTATCC 1 cut(s) 974
BcnI CCSGG 3 cut(s) 453, 585, 720
BcoDI GTCTC 4 cut(s) 820, 878, 884, 1040
BfmI CTRYAG 1 cut(s) 754
BfuI GTATCC 1 cut(s) 974
BglII AGATCT 1 cut(s) 16
BisI GCNGC 6 cut(s) 146, 327, 330, 360, 630, 846
BlsI GCNGC 6 cut(s) 147, 328, 331, 361, 631, 847
Bme1390I CCNGG 7 cut(s) 112, 123, 192, 453, 585, 602, 720
Bme18I GGWCC 3 cut(s) 125, 464, 608
BmgBI CACGTC 1 cut(s) 956
BmgT120I GGNCC 4 cut(s) 125, 455, 464, 608
BmiI GGNNCC 3 cut(s) 240, 465, 1017
BmrFI CCNGG 7 cut(s) 112, 123, 192, 453, 585, 602, 720
BmsI GCATC 3 cut(s) 268, 573, 947
BpiI GAAGAC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 389
Bpu10I CCTNAGC 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 1007
BpuEI CTTGAG 1 cut(s) 207
BpuMI CCSGG 3 cut(s) 453, 585, 720
Bsa29I ATCGAT 2 cut(s) 810, 941
BsaJI CCNNGG 3 cut(s) 291, 371, 931
Bsc4I CCNNNNNNNGG 5 cut(s) 377, 443, 617, 719, 726
Bse1I ACTGG 2 cut(s) 128, 731
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 3 cut(s) 57, 840, 868
BseBI CCWGG 4 cut(s) 112, 123, 192, 602
BseCI ATCGAT 2 cut(s) 810, 941
BseDI CCNNGG 3 cut(s) 291, 371, 931
BseLI CCNNNNNNNGG 5 cut(s) 377, 443, 617, 719, 726
BseMI GCAATG 3 cut(s) 57, 840, 868
BseMII CTCAG 3 cut(s) 51, 473, 815
BseNI ACTGG 2 cut(s) 128, 731
BseXI GCAGC 5 cut(s) 157, 313, 371, 616, 832
BseYI CCCAGC 1 cut(s) 545
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 6 cut(s) 183, 424, 436, 456, 533, 1000
BshVI ATCGAT 2 cut(s) 810, 941
BsiHKAI GWGCWC 1 cut(s) 745
BsiSI CCGG 3 cut(s) 453, 584, 720
BslFI GGGAC 2 cut(s) 477, 834
BslI CCNNNNNNNGG 5 cut(s) 377, 443, 617, 719, 726
BsmAI GTCTC 4 cut(s) 820, 878, 884, 1040
BsmBI CGTCTC 1 cut(s) 878
BsmFI GGGAC 2 cut(s) 477, 834
BsnI GGCC 6 cut(s) 183, 424, 436, 456, 533, 1000
Bsp119I TTCGAA 1 cut(s) 1007
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 7 cut(s) 16, 238, 549, 669, 792, 942, 1015
Bsp19I CCATGG 1 cut(s) 371
BspACI CCGC 5 cut(s) 291, 293, 329, 477, 783
BspANI GGCC 6 cut(s) 183, 424, 436, 456, 533, 1000
BspCNI CTCAG 3 cut(s) 50, 472, 816
BspDI ATCGAT 2 cut(s) 810, 941
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 3 cut(s) 240, 465, 1017
BspPI GGATC 7 cut(s) 233, 246, 557, 677, 937, 1010, 1023
BspT104I TTCGAA 1 cut(s) 1007
BsrDI GCAATG 3 cut(s) 57, 840, 868
BsrI ACTGG 2 cut(s) 128, 731
BssECI CCNNGG 3 cut(s) 291, 371, 931
BssMI GATC 7 cut(s) 16, 238, 549, 669, 792, 942, 1015
BssSI CACGAG 1 cut(s) 887
BssT1I CCWWGG 1 cut(s) 371
Bst2BI CACGAG 1 cut(s) 887
Bst2UI CCWGG 4 cut(s) 112, 123, 192, 602
Bst4CI ACNGT 6 cut(s) 203, 468, 734, 758, 854, 932
BstBI TTCGAA 1 cut(s) 1007
BstC8I GCNNGC 2 cut(s) 535, 1002
BstDEI CTNAG 4 cut(s) 37, 333, 459, 824
BstDSI CCRYGG 3 cut(s) 291, 371, 931
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 7 cut(s) 19, 241, 552, 672, 795, 945, 1018
BstMAI GTCTC 4 cut(s) 820, 878, 884, 1040
BstMBI GATC 7 cut(s) 16, 238, 549, 669, 792, 942, 1015
BstNI CCWGG 4 cut(s) 112, 123, 192, 602
BstSCI CCNGG 7 cut(s) 110, 121, 190, 451, 583, 600, 718
BstSFI CTRYAG 1 cut(s) 754
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 5 cut(s) 157, 313, 371, 616, 832
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 3 cut(s) 16, 238, 1015
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 3 cut(s) 16, 238, 1015
Bsu15I ATCGAT 2 cut(s) 810, 941
Bsu36I CCTNAGG 1 cut(s) 459
BsuI GTATCC 1 cut(s) 974
BsuRI GGCC 6 cut(s) 183, 424, 436, 456, 533, 1000
BsuTUI ATCGAT 2 cut(s) 810, 941
BtgI CCRYGG 3 cut(s) 291, 371, 931
BtgZI GCGATG 1 cut(s) 291
BtrI CACGTC 1 cut(s) 956
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 5 cut(s) 45, 135, 208, 596, 745
Cac8I GCNNGC 2 cut(s) 535, 1002
CaiI CAGNNNCTG 1 cut(s) 134
Cfr13I GGNCC 4 cut(s) 125, 455, 464, 608
Cfr42I CCGCGG 1 cut(s) 294
ClaI ATCGAT 2 cut(s) 810, 941
CseI GACGC 1 cut(s) 857
Csp6I GTAC 3 cut(s) 283, 469, 759
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 6 cut(s) 97, 271, 372, 580, 1012, 1036
CviQI GTAC 3 cut(s) 283, 469, 759
DdeI CTNAG 4 cut(s) 37, 333, 459, 824
DpnI GATC 7 cut(s) 18, 240, 551, 671, 794, 944, 1017
DpnII GATC 7 cut(s) 16, 238, 549, 669, 792, 942, 1015
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 371
Eco147I AGGCCT 1 cut(s) 533
Eco47I GGWCC 3 cut(s) 125, 464, 608
Eco57I CTGAAG 1 cut(s) 384
Eco81I CCTNAGG 1 cut(s) 459
EcoRII CCWGG 4 cut(s) 110, 121, 190, 600
EcoT14I CCWWGG 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 878
FaeI CATG 6 cut(s) 100, 274, 375, 583, 1015, 1039
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 2 cut(s) 477, 834
FatI CATG 6 cut(s) 96, 270, 371, 579, 1011, 1035
FauI CCCGC 2 cut(s) 286, 298
FauNDI CATATG 1 cut(s) 71
Fnu4HI GCNGC 6 cut(s) 146, 327, 330, 360, 630, 846
Fsp4HI GCNGC 6 cut(s) 146, 327, 330, 360, 630, 846
GluI GCNGC 6 cut(s) 146, 327, 330, 360, 630, 846
GsaI CCCAGC 1 cut(s) 549
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 6 cut(s) 183, 424, 436, 456, 533, 1000
HapII CCGG 3 cut(s) 453, 584, 720
HgaI GACGC 1 cut(s) 857
Hin1II CATG 6 cut(s) 100, 274, 375, 583, 1015, 1039
HinfI GANTC 6 cut(s) 4, 41, 115, 518, 715, 1063
HpaII CCGG 3 cut(s) 453, 584, 720
HphI GGTGA 4 cut(s) 206, 308, 734, 866
Hpy166II GTNNAC 2 cut(s) 285, 299
Hpy188I TCNGA 3 cut(s) 16, 40, 947
Hpy188III TCNNGA 5 cut(s) 87, 307, 406, 799, 1060
Hpy8I GTNNAC 2 cut(s) 285, 299
Hpy99I CGWCG 1 cut(s) 873
HpyAV CCTTC 4 cut(s) 150, 773, 851, 965
HpyCH4III ACNGT 6 cut(s) 203, 468, 734, 758, 854, 932
HpyCH4IV ACGT 1 cut(s) 955
HpyCH4V TGCA 3 cut(s) 359, 750, 1043
HpyF3I CTNAG 4 cut(s) 37, 333, 459, 824
HpySE526I ACGT 1 cut(s) 955
Hsp92II CATG 6 cut(s) 100, 274, 375, 583, 1015, 1039
KspI CCGCGG 1 cut(s) 294
Kzo9I GATC 7 cut(s) 16, 238, 549, 669, 792, 942, 1015
LmnI GCTCC 3 cut(s) 193, 485, 935
Lsp1109I GCAGC 5 cut(s) 157, 313, 371, 616, 832
LweI GCATC 3 cut(s) 268, 573, 947
MaeII ACGT 1 cut(s) 955
MaeIII GTNAC 5 cut(s) 130, 653, 722, 785, 1027
MalI GATC 7 cut(s) 18, 240, 551, 671, 794, 944, 1017
MboI GATC 7 cut(s) 16, 238, 549, 669, 792, 942, 1015
MboII GAAGA 2 cut(s) 209, 788
MflI RGATCY 3 cut(s) 16, 238, 1015
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 2 cut(s) 639, 815
MlyI GAGTC 3 cut(s) 13, 35, 109
MnlI CCTC 9 cut(s) 44, 231, 245, 468, 660, 765, 982, 990, 1067
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 1034
MspA1I CMGCKG 3 cut(s) 293, 362, 614
MspI CCGG 3 cut(s) 453, 584, 720
MspR9I CCNGG 7 cut(s) 112, 123, 192, 453, 585, 602, 720
MvaI CCWGG 4 cut(s) 112, 123, 192, 602
MvnI CGCG 1 cut(s) 293
NciI CCSGG 3 cut(s) 453, 585, 720
NcoI CCATGG 1 cut(s) 371
NdeI CATATG 1 cut(s) 71
NdeII GATC 7 cut(s) 16, 238, 549, 669, 792, 942, 1015
NlaIII CATG 6 cut(s) 100, 274, 375, 583, 1015, 1039
NlaIV GGNNCC 3 cut(s) 240, 465, 1017
NmeAIII GCCGAG 1 cut(s) 605
NmuCI GTSAC 3 cut(s) 130, 722, 1027
NspV TTCGAA 1 cut(s) 1007
PceI AGGCCT 1 cut(s) 533
PfeI GAWTC 3 cut(s) 518, 715, 1063
PflMI CCANNNNNTGG 2 cut(s) 377, 617
PkrI GCNGC 6 cut(s) 147, 328, 331, 361, 631, 847
PleI GAGTC 3 cut(s) 12, 35, 109
PpsI GAGTC 3 cut(s) 12, 35, 109
Psp6I CCWGG 4 cut(s) 110, 121, 190, 600
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 4 cut(s) 110, 121, 190, 600
PspN4I GGNNCC 3 cut(s) 240, 465, 1017
PspPI GGNCC 4 cut(s) 125, 455, 464, 608
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 3 cut(s) 16, 238, 1015
PvuII CAGCTG 2 cut(s) 362, 614
RsaI GTAC 3 cut(s) 284, 470, 760
RsaNI GTAC 3 cut(s) 283, 469, 759
RseI CAYNNNNRTG 1 cut(s) 1034
SacII CCGCGG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 6 cut(s) 146, 327, 330, 360, 630, 846
Sau3AI GATC 7 cut(s) 16, 238, 549, 669, 792, 942, 1015
Sau96I GGNCC 4 cut(s) 125, 455, 464, 608
SchI GAGTC 3 cut(s) 13, 35, 109
ScrFI CCNGG 7 cut(s) 112, 123, 192, 453, 585, 602, 720
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 3 cut(s) 268, 573, 947
SfcI CTRYAG 1 cut(s) 754
Sfr303I CCGCGG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 1007
SgrBI CCGCGG 1 cut(s) 294
SinI GGWCC 3 cut(s) 125, 464, 608
SmiMI CAYNNNNRTG 1 cut(s) 1034
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 2 cut(s) 639, 815
SseBI AGGCCT 1 cut(s) 533
SsiI CCGC 5 cut(s) 291, 293, 329, 477, 783
StuI AGGCCT 1 cut(s) 533
StyD4I CCNGG 7 cut(s) 110, 121, 190, 451, 583, 600, 718
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 6 cut(s) 203, 468, 734, 758, 854, 932
TaiI ACGT 1 cut(s) 958
TaqI TCGA 3 cut(s) 810, 941, 1007
TaqII GACCGA 1 cut(s) 596
TasI AATT 2 cut(s) 639, 815
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 3 cut(s) 518, 715, 1063
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 5 cut(s) 52, 135, 208, 596, 752
TseFI GTSAC 3 cut(s) 130, 722, 1027
TseI GCWGC 5 cut(s) 145, 326, 359, 629, 845
Tsp45I GTSAC 3 cut(s) 130, 722, 1027
TspDTI ATGAA 1 cut(s) 651
TspGWI ACGGA 2 cut(s) 236, 977
TspRI CASTG 5 cut(s) 52, 135, 208, 596, 752
Van91I CCANNNNNTGG 2 cut(s) 377, 617
VpaK11BI GGWCC 3 cut(s) 125, 464, 608
XapI RAATTY 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.