AT3G17820

glutamine synthetase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
6097201 .. 6099595
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17820.1

Sequence Viewer

Length: 1065 bp
ATGTCTCTGCTCTCAGATCTCGTTAACCTCAACCTCACCGATGCCACCGGGAAAATCATCGCCGAATACATATGGATCGGTGGATCTGGAATGGATATCAGAAGCAAAGCCAGGACACTACCAGGACCAGTGACTGATCCATCAAAGCTTCCCAAGTGGAACTACGACGGATCCAGCACCGGTCAGGCTGCTGGAGAAGACAGTGAAGTCATTCTATACCCTCAGGCAATATTCAAGGATCCCTTCAGGAAAGGCAACAACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGAGGCACAACGCTGCTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTGGTATGGGATTGAGCAAGAATACACTTTGATGCAAAAGGATGTGAACTGGCCAATTGGTTGGCCTGTTGGTGGCTACCCTGGCCCTCAGGGACCTTACTACTGTGGTGTGGGAGCTGACAAAGCCATTGGTCGTGACATTGTGGATGCTCACTACAAGGCCTGTCTTTACGCCGGTATTGGTATTTCTGGTATCAATGGAGAAGTCATGCCAGGCCAGTGGGAGTTCCAAGTCGGCCCTGTTGAGGGTATTAGTTCTGGTGATCAAGTCTGGGTTGCTCGATACCTTCTCGAGAGGATCACTGAGATCTCTGGTGTAATTGTCAGCTTCGACCCGAAACCAGTCCCGGGTGACTGGAATGGAGCTGGAGCTCACTGCAACTACAGCACTAAGACAATGAGAAACGATGGAGGATTAGAAGTGATCAAGAAAGCGATAGGGAAGCTTCAGCTGAAACACAAAGAACACATTGCTGCTTACGGTGAAGGAAACGAGCGTCGTCTCACTGGAAAGCACGAAACCGCAGACATCAACACATTCTCTTGGGGAGTCGCGAACCGTGGAGCGTCAGTGAGAGTGGGACGTGACACAGAGAAGGAAGGTAAAGGGTACTTCGAAGACAGAAGGCCAGCTTCTAACATGGATCCTTACGTTGTCACCTCCATGATCGCTGAGACGACCATACTCGGTTGA

Protein Analysis

354

Amino Acids

38.59

Weight (kDa)

5.72

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 51 - 97 1.3e-08 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 124 - 351 9.4e-15 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AccII CGCG 1 cut(s) 926
AciI CCGC 1 cut(s) 894
AcoI YGGCCR 1 cut(s) 422
AcuI CTGAAG 3 cut(s) 229, 325, 803
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 6 cut(s) 318, 377, 443, 616, 617, 719
AgeI ACCGGT 1 cut(s) 179
AgsI TTSAA 1 cut(s) 235
AjiI CACGTC 1 cut(s) 956
AjnI CCWGG 5 cut(s) 110, 121, 264, 451, 583
AluBI AGCT 9 cut(s) 148, 293, 488, 699, 737, 743, 817, 823, 1004
AluI AGCT 9 cut(s) 148, 293, 488, 699, 737, 743, 817, 823, 1004
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 3 cut(s) 9, 878, 1040
AlwNI CAGNNNCTG 1 cut(s) 134
Ama87I CYCGRG 2 cut(s) 662, 718
AoxI GGCC 7 cut(s) 422, 434, 454, 531, 586, 607, 998
ApeKI GCWGC 3 cut(s) 188, 329, 845
AsiGI ACCGGT 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 4 cut(s) 125, 455, 464, 608
AsuC2I CCSGG 3 cut(s) 49, 719, 720
AsuHPI GGTGA 7 cut(s) 28, 280, 308, 644, 734, 866, 1021
AsuII TTCGAA 1 cut(s) 987
AvaI CYCGRG 2 cut(s) 662, 718
AvaII GGWCC 2 cut(s) 125, 464
AxyI CCTNAGG 2 cut(s) 222, 459
BalI TGGCCA 1 cut(s) 424
BamHI GGATCC 3 cut(s) 170, 238, 1015
BanII GRGCYC 1 cut(s) 745
BbsI GAAGAC 2 cut(s) 204, 996
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 3 cut(s) 175, 316, 832
BccI CCATC 2 cut(s) 148, 773
BciT130I CCWGG 5 cut(s) 112, 123, 266, 453, 585
BclI TGATCA 2 cut(s) 634, 795
BcnI CCSGG 3 cut(s) 49, 719, 720
BcoDI GTCTC 3 cut(s) 9, 878, 1040
BfmI CTRYAG 1 cut(s) 754
BglII AGATCT 3 cut(s) 16, 336, 678
BisI GCNGC 3 cut(s) 189, 330, 846
BlsI GCNGC 3 cut(s) 190, 331, 847
Bme1390I CCNGG 8 cut(s) 49, 112, 123, 266, 453, 585, 719, 720
Bme18I GGWCC 2 cut(s) 125, 464
BmeT110I CYCGRG 2 cut(s) 662, 718
BmgBI CACGTC 1 cut(s) 956
BmgT120I GGNCC 4 cut(s) 125, 455, 464, 608
BmiI GGNNCC 5 cut(s) 172, 240, 369, 465, 1017
BmrFI CCNGG 8 cut(s) 49, 112, 123, 266, 453, 585, 719, 720
BmsI GCATC 4 cut(s) 31, 268, 393, 508
BpiI GAAGAC 2 cut(s) 204, 996
BpmI CTGGAG 2 cut(s) 213, 759
Bpu14I TTCGAA 1 cut(s) 987
BpuMI CCSGG 3 cut(s) 49, 719, 720
BsaJI CCNNGG 5 cut(s) 360, 371, 451, 718, 931
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 4 cut(s) 359, 389, 927, 957
Bsc4I CCNNNNNNNGG 6 cut(s) 318, 377, 443, 616, 617, 719
Bse118I RCCGGY 2 cut(s) 179, 545
Bse1I ACTGG 6 cut(s) 128, 425, 589, 713, 731, 883
Bse21I CCTNAGG 2 cut(s) 222, 459
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 5 cut(s) 112, 123, 266, 453, 585
BseDI CCNNGG 5 cut(s) 360, 371, 451, 718, 931
BseGI GGATG 3 cut(s) 261, 418, 523
BseLI CCNNNNNNNGG 6 cut(s) 318, 377, 443, 616, 617, 719
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 5 cut(s) 27, 236, 473, 666, 1035
BseNI ACTGG 6 cut(s) 128, 425, 589, 713, 731, 883
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 3 cut(s) 175, 316, 832
Bsh1236I CGCG 1 cut(s) 926
BshFI GGCC 7 cut(s) 424, 436, 456, 533, 588, 609, 1000
BshTI ACCGGT 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 745
BsiHKCI CYCGRG 2 cut(s) 662, 718
BsiSI CCGG 4 cut(s) 48, 180, 546, 719
BslFI GGGAC 3 cut(s) 477, 701, 966
BslI CCNNNNNNNGG 6 cut(s) 318, 377, 443, 616, 617, 719
BsmAI GTCTC 3 cut(s) 9, 878, 1040
BsmBI CGTCTC 2 cut(s) 878, 1040
BsmFI GGGAC 3 cut(s) 477, 701, 966
BsnI GGCC 7 cut(s) 424, 436, 456, 533, 588, 609, 1000
BsoBI CYCGRG 2 cut(s) 662, 718
Bsp119I TTCGAA 1 cut(s) 987
Bsp1286I GDGCHC 1 cut(s) 745
Bsp68I TCGCGA 1 cut(s) 926
BspACI CCGC 1 cut(s) 894
BspANI GGCC 7 cut(s) 424, 436, 456, 533, 588, 609, 1000
BspCNI CTCAG 5 cut(s) 26, 235, 472, 667, 1036
BspFNI CGCG 1 cut(s) 926
BspLI GGNNCC 5 cut(s) 172, 240, 369, 465, 1017
BspT104I TTCGAA 1 cut(s) 987
BsrDI GCAATG 1 cut(s) 840
BsrFI RCCGGY 2 cut(s) 179, 545
BsrI ACTGG 6 cut(s) 128, 425, 589, 713, 731, 883
BssAI RCCGGY 2 cut(s) 179, 545
BssECI CCNNGG 5 cut(s) 360, 371, 451, 718, 931
BssT1I CCWWGG 2 cut(s) 360, 371
Bst2UI CCWGG 5 cut(s) 112, 123, 266, 453, 585
Bst4CI ACNGT 4 cut(s) 203, 476, 854, 932
BstBI TTCGAA 1 cut(s) 987
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 7 cut(s) 13, 222, 333, 459, 675, 762, 1044
BstDSI CCRYGG 1 cut(s) 931
BstF5I GGATG 3 cut(s) 261, 418, 523
BstFNI CGCG 1 cut(s) 926
BstMAI GTCTC 3 cut(s) 9, 878, 1040
BstMWI GCNNNNNNNGC 3 cut(s) 453, 494, 756
BstNI CCWGG 5 cut(s) 112, 123, 266, 453, 585
BstSCI CCNGG 8 cut(s) 47, 110, 121, 264, 451, 583, 717, 718
BstSFI CTRYAG 1 cut(s) 754
BstUI CGCG 1 cut(s) 926
BstV1I GCAGC 3 cut(s) 175, 316, 832
BstV2I GAAGAC 2 cut(s) 204, 996
BstX2I RGATCY 7 cut(s) 16, 83, 170, 238, 336, 678, 1015
BstXI CCANNNNNNTGG 2 cut(s) 432, 591
BstYI RGATCY 7 cut(s) 16, 83, 170, 238, 336, 678, 1015
Bsu36I CCTNAGG 2 cut(s) 222, 459
BsuRI GGCC 7 cut(s) 424, 436, 456, 533, 588, 609, 1000
BtgI CCRYGG 1 cut(s) 931
BtgZI GCGATG 1 cut(s) 43
BtrI CACGTC 1 cut(s) 956
BtsCI GGATG 3 cut(s) 261, 418, 523
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 7 cut(s) 135, 208, 596, 672, 745, 876, 948
BtuMI TCGCGA 1 cut(s) 926
Cac8I GCNNGC 1 cut(s) 1002
CaiI CAGNNNCTG 1 cut(s) 134
Cfr10I RCCGGY 2 cut(s) 179, 545
Cfr13I GGNCC 4 cut(s) 125, 455, 464, 608
Cfr9I CCCGGG 1 cut(s) 718
CseI GACGC 2 cut(s) 857, 927
Csp6I GTAC 1 cut(s) 982
CspAI ACCGGT 1 cut(s) 179
CviAII CATG 3 cut(s) 580, 1012, 1036
CviQI GTAC 1 cut(s) 982
DdeI CTNAG 7 cut(s) 13, 222, 333, 459, 675, 762, 1044
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 422
Ecl136II GAGCTC 1 cut(s) 743
Eco130I CCWWGG 2 cut(s) 360, 371
Eco147I AGGCCT 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 745
Eco32I GATATC 1 cut(s) 97
Eco47I GGWCC 2 cut(s) 125, 464
Eco53kI GAGCTC 1 cut(s) 743
Eco57I CTGAAG 3 cut(s) 229, 325, 803
Eco81I CCTNAGG 2 cut(s) 222, 459
Eco88I CYCGRG 2 cut(s) 662, 718
EcoICRI GAGCTC 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 5 cut(s) 110, 121, 264, 451, 583
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 360, 371
EcoT38I GRGCYC 1 cut(s) 745
ErhI CCWWGG 2 cut(s) 360, 371
Esp3I CGTCTC 2 cut(s) 878, 1040
FaeI CATG 3 cut(s) 583, 1015, 1039
FaiI YATR 8 cut(s) 71, 73, 217, 378, 581, 1013, 1037, 1055
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 988, 1020
FaqI GGGAC 3 cut(s) 477, 701, 966
FatI CATG 3 cut(s) 579, 1011, 1035
FauNDI CATATG 1 cut(s) 71
FbaI TGATCA 2 cut(s) 634, 795
Fnu4HI GCNGC 3 cut(s) 189, 330, 846
FokI GGATG 3 cut(s) 248, 425, 530
FriOI GRGCYC 1 cut(s) 745
Fsp4HI GCNGC 3 cut(s) 189, 330, 846
GluI GCNGC 3 cut(s) 189, 330, 846
GsuI CTGGAG 2 cut(s) 213, 759
HaeIII GGCC 7 cut(s) 424, 436, 456, 533, 588, 609, 1000
HapII CCGG 4 cut(s) 48, 180, 546, 719
HgaI GACGC 2 cut(s) 857, 927
Hin1II CATG 3 cut(s) 583, 1015, 1039
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 2 cut(s) 146, 815
HinfI GANTC 1 cut(s) 921
HpaI GTTAAC 1 cut(s) 25
HpaII CCGG 4 cut(s) 48, 180, 546, 719
HphI GGTGA 7 cut(s) 28, 280, 308, 644, 734, 866, 1021
Hpy166II GTNNAC 2 cut(s) 25, 418
Hpy188I TCNGA 2 cut(s) 16, 101
Hpy188III TCNNGA 7 cut(s) 87, 247, 506, 662, 664, 799, 925
Hpy8I GTNNAC 2 cut(s) 25, 418
Hpy99I CGWCG 3 cut(s) 170, 356, 873
HpyAV CCTTC 6 cut(s) 253, 668, 851, 961, 965, 990
HpyCH4III ACNGT 4 cut(s) 203, 476, 854, 932
HpyCH4IV ACGT 3 cut(s) 354, 955, 1023
HpyCH4V TGCA 2 cut(s) 406, 750
HpyF10VI GCNNNNNNNGC 3 cut(s) 453, 494, 756
HpyF3I CTNAG 7 cut(s) 13, 222, 333, 459, 675, 762, 1044
HpySE526I ACGT 3 cut(s) 354, 955, 1023
Hsp92II CATG 3 cut(s) 583, 1015, 1039
Ksp22I TGATCA 2 cut(s) 634, 795
KspAI GTTAAC 1 cut(s) 25
LmnI GCTCC 5 cut(s) 367, 485, 734, 740, 935
Lsp1109I GCAGC 3 cut(s) 175, 316, 832
LweI GCATC 4 cut(s) 31, 268, 393, 508
MaeII ACGT 3 cut(s) 354, 955, 1023
MaeIII GTNAC 5 cut(s) 130, 506, 722, 956, 1027
MboII GAAGA 3 cut(s) 209, 331, 1001
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 7 cut(s) 16, 83, 170, 238, 336, 678, 1015
MhlI GDGCHC 1 cut(s) 745
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 2 cut(s) 426, 690
MluNI TGGCCA 1 cut(s) 424
MlyI GAGTC 1 cut(s) 930
MmeI TCCRAC 1 cut(s) 332
Mox20I TGGCCA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 210
MscI TGGCCA 1 cut(s) 424
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 3 cut(s) 266, 401, 1034
Msp20I TGGCCA 1 cut(s) 424
MspA1I CMGCKG 2 cut(s) 293, 823
MspI CCGG 4 cut(s) 48, 180, 546, 719
MspR9I CCNGG 8 cut(s) 49, 112, 123, 266, 453, 585, 719, 720
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 5 cut(s) 112, 123, 266, 453, 585
MvnI CGCG 1 cut(s) 926
MwoI GCNNNNNNNGC 3 cut(s) 453, 494, 756
NciI CCSGG 3 cut(s) 49, 719, 720
NdeI CATATG 1 cut(s) 71
NlaIII CATG 3 cut(s) 583, 1015, 1039
NlaIV GGNNCC 5 cut(s) 172, 240, 369, 465, 1017
NmuCI GTSAC 5 cut(s) 130, 506, 722, 956, 1027
NruI TCGCGA 1 cut(s) 926
NspV TTCGAA 1 cut(s) 987
PaeR7I CTCGAG 1 cut(s) 662
PceI AGGCCT 1 cut(s) 533
PdmI GAANNNNTTC 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 179
PkrI GCNGC 3 cut(s) 190, 331, 847
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
PpuMI RGGWCCY 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 745
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 5 cut(s) 110, 121, 264, 451, 583
PspGI CCWGG 5 cut(s) 110, 121, 264, 451, 583
PspN4I GGNNCC 5 cut(s) 172, 240, 369, 465, 1017
PspPI GGNCC 4 cut(s) 125, 455, 464, 608
PspPPI RGGWCCY 1 cut(s) 464
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 7 cut(s) 16, 83, 170, 238, 336, 678, 1015
PvuII CAGCTG 2 cut(s) 293, 823
RruI TCGCGA 1 cut(s) 926
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
RseI CAYNNNNRTG 3 cut(s) 266, 401, 1034
SacI GAGCTC 1 cut(s) 745
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 3 cut(s) 189, 330, 846
Sau96I GGNCC 4 cut(s) 125, 455, 464, 608
SchI GAGTC 1 cut(s) 930
ScrFI CCNGG 8 cut(s) 49, 112, 123, 266, 453, 585, 719, 720
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 4 cut(s) 31, 268, 393, 508
SfcI CTRYAG 1 cut(s) 754
Sfr274I CTCGAG 1 cut(s) 662
SfuI TTCGAA 1 cut(s) 987
SinI GGWCC 2 cut(s) 125, 464
SlaI CTCGAG 1 cut(s) 662
SmaI CCCGGG 1 cut(s) 720
SmiMI CAYNNNNRTG 3 cut(s) 266, 401, 1034
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse9I AATT 2 cut(s) 426, 690
SseBI AGGCCT 1 cut(s) 533
SsiI CCGC 1 cut(s) 894
SspI AATATT 1 cut(s) 231
SstI GAGCTC 1 cut(s) 745
StuI AGGCCT 1 cut(s) 533
StyD4I CCNGG 8 cut(s) 47, 110, 121, 264, 451, 583, 717, 718
StyI CCWWGG 2 cut(s) 360, 371
TaaI ACNGT 4 cut(s) 203, 476, 854, 932
TaiI ACGT 3 cut(s) 357, 958, 1026
TaqI TCGA 4 cut(s) 652, 663, 702, 987
TasI AATT 2 cut(s) 426, 690
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 7 cut(s) 135, 208, 596, 679, 752, 883, 948
TseFI GTSAC 5 cut(s) 130, 506, 722, 956, 1027
TseI GCWGC 3 cut(s) 188, 329, 845
Tsp45I GTSAC 5 cut(s) 130, 506, 722, 956, 1027
TspGWI ACGGA 1 cut(s) 183
TspMI CCCGGG 1 cut(s) 718
TspRI CASTG 7 cut(s) 135, 208, 596, 679, 752, 883, 948
VpaK11BI GGWCC 2 cut(s) 125, 464
XhoI CTCGAG 1 cut(s) 662
XmaI CCCGGG 1 cut(s) 718
XmnI GAANNNNTTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.