Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Forward (+)

1012616 .. 1014557

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG011900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCTCGGCTTACTGATCTTATCAACCTCAACCTCTCAGATATCACTGACAAGATTATCGCGGAATACATATGGTCAGCTTTATTTGATAATATCTGTACTCTTCCTGCACCAGTGAATATTCCTTCAAAACTACCCAAATGGAACTTTGATGGCTCTAGCACTGGCCAAGCTCCTGGAGAAGATAGTGAAATCATCTTATACCCACAAGCAATCTACAGGGACCCATTTAGGAGGGGCAACAACATCCTTGTGATATGTGATACTTACACACCAGCTGGAGAGCCAATTCCAACCAACAAGAGGGCTAAGGCTGCAAAGATCTTCAGCCATCCTGATGTTGTTGCTGAAGAGCCCTGGTATGGCTTAGAGCAAGAGTACACACTATTGCAGAAAGATGTACAATGGCCAATTGGGTGGCCTCTGGGTGGATATCCTGGAGCACAGGGACCGTACTACTGTGGTGTTGGCGCTGATAAGGCCTTTGGCCGTGACATTGTAGATTCTCACTACAAAGCTTGTCTTTATGCCGGTATTGACATCAGTGGCATCAATGGTGAAGTTATGCCTGGTCAGTGGGAATTCCAAGTTGGACCAACAGTTGGCATCGCTGCTGGAGATCAACTATGGGCAGCGCGTTACATTTTGGAGAGGATCACTGAGATAGCTGGAGTGGTGGTTTCATTTGATCCGAAACCAATTCCTGGTGACTGGAACGGTGCTGGTGCACACACTAATTTCAGCACCAAGACCATGAGAAAGGAAGGAGGCTATGAGGTGATCAAGAAGGCAATTGAGAAGCTTGGATTGAGGCACAAGGAACACATTGCAGCTTATGGCGAAGGCAATGAGCGCCGCCTCACCGGACGACATGAAACAGCAGACATTGACACATTCGTATGGGGTGTGGCTAACCGTGGAGCTTCGATAAGAGTTGGGAGGGACACTGAGAAAGAAGGAAAGGGCTATTTTGAGGACCGGAGGCCGGCTTCTAACATGGATCCTTATGTTGTCACCTCCATGATTGCTGAAACTACACTGCTCTGGAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

351

Amino Acids

38.85

Weight (kDa)

5.4

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gln-synt_N	PF03951	49 - 92	1.4e-09	Glutamine synthetase, beta-Grasp domain
Gln-synt_C	PF00120	121 - 249	1.3e-10	Glutamine synthetase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	602, 704
AccII	CGCG	2 cut(s)	62, 637
AciI	CCGC	2 cut(s)	62, 856
AclWI	GGATC	4 cut(s)	662, 683, 995, 1008
AcoI	YGGCCR	3 cut(s)	166, 407, 487
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	2 cut(s)	310, 369
AfaI	GTAC	4 cut(s)	100, 380, 402, 455
AfiI	CCNNNNNNNGG	6 cut(s)	303, 362, 428, 602, 704, 985
AgsI	TTSAA	1 cut(s)	129
AjnI	CCWGG	5 cut(s)	175, 356, 436, 568, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
AluBI	AGCT	8 cut(s)	80, 173, 278, 518, 668, 802, 833, 923
AluI	AGCT	8 cut(s)	80, 173, 278, 518, 668, 802, 833, 923
Alw21I	GWGCWC	2 cut(s)	445, 730
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	726
AlwI	GGATC	4 cut(s)	662, 683, 995, 1008
AoxI	GGCC	6 cut(s)	166, 407, 419, 480, 487, 983
ApaLI	GTGCAC	1 cut(s)	726
ApeKI	GCWGC	4 cut(s)	314, 611, 632, 830
ApoI	RAATTY	1 cut(s)	581
AspLEI	GCGC	3 cut(s)	473, 637, 855
AspS9I	GGNCC	4 cut(s)	223, 449, 593, 976
AsuHPI	GGTGA	5 cut(s)	569, 719, 790, 853, 1006
AvaII	GGWCC	4 cut(s)	223, 449, 593, 976
BaeGI	GKGCMC	1 cut(s)	730
BalI	TGGCCA	2 cut(s)	168, 409
BamHI	GGATCC	1 cut(s)	1000
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	2 cut(s)	445, 730
BbvI	GCAGC	4 cut(s)	301, 598, 644, 842
BccI	CCATC	2 cut(s)	146, 339
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	5 cut(s)	177, 358, 438, 570, 705
BclI	TGATCA	1 cut(s)	780
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	217
BfoI	RGCGCY	2 cut(s)	474, 856
BglII	AGATCT	1 cut(s)	321
BisI	GCNGC	5 cut(s)	315, 612, 633, 831, 856
BlsI	GCNGC	5 cut(s)	316, 613, 634, 832, 857
Bme1390I	CCNGG	5 cut(s)	177, 358, 438, 570, 705
Bme18I	GGWCC	4 cut(s)	223, 449, 593, 976
BmgT120I	GGNCC	4 cut(s)	223, 449, 593, 976
BmiI	GGNNCC	4 cut(s)	224, 225, 450, 1002
BmrFI	CCNGG	5 cut(s)	177, 358, 438, 570, 705
BmsI	GCATC	2 cut(s)	558, 615
BpmI	CTGGAG	5 cut(s)	198, 300, 459, 636, 690
Bpu10I	CCTNAGC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	356, 916
BsaWI	WCCGGW	2 cut(s)	863, 978
BsaXI	ACNNNNNCTCC	2 cut(s)	663, 693
Bsc4I	CCNNNNNNNGG	6 cut(s)	303, 362, 428, 602, 704, 985
Bse118I	RCCGGY	2 cut(s)	530, 985
Bse1I	ACTGG	3 cut(s)	113, 169, 716
Bse3DI	GCAATG	2 cut(s)	825, 853
BseBI	CCWGG	5 cut(s)	177, 358, 438, 570, 705
BseDI	CCNNGG	2 cut(s)	356, 916
BseGI	GGATG	2 cut(s)	246, 331
BseLI	CCNNNNNNNGG	6 cut(s)	303, 362, 428, 602, 704, 985
BseMI	GCAATG	2 cut(s)	825, 853
BseMII	CTCAG	3 cut(s)	51, 651, 939
BseNI	ACTGG	3 cut(s)	113, 169, 716
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	4 cut(s)	301, 598, 644, 842
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	2 cut(s)	62, 637
BshFI	GGCC	6 cut(s)	168, 409, 421, 482, 489, 985
BsiHKAI	GWGCWC	2 cut(s)	445, 730
BsiSI	CCGG	4 cut(s)	531, 864, 979, 986
BslFI	GGGAC	3 cut(s)	236, 462, 956
BslI	CCNNNNNNNGG	6 cut(s)	303, 362, 428, 602, 704, 985
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	236, 462, 956
BsnI	GGCC	6 cut(s)	168, 409, 421, 482, 489, 985
Bsp1286I	GDGCHC	3 cut(s)	357, 445, 730
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	7 cut(s)	16, 321, 619, 654, 688, 780, 1000
BspACI	CCGC	2 cut(s)	62, 856
BspANI	GGCC	6 cut(s)	168, 409, 421, 482, 489, 985
BspCNI	CTCAG	3 cut(s)	50, 652, 940
BspFNI	CGCG	2 cut(s)	62, 637
BspLI	GGNNCC	4 cut(s)	224, 225, 450, 1002
BspPI	GGATC	4 cut(s)	662, 683, 995, 1008
BspQI	GCTCTTC	1 cut(s)	345
BsrDI	GCAATG	2 cut(s)	825, 853
BsrFI	RCCGGY	2 cut(s)	530, 985
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	113, 169, 716
BssAI	RCCGGY	2 cut(s)	530, 985
BssECI	CCNNGG	2 cut(s)	356, 916
BssMI	GATC	7 cut(s)	16, 321, 619, 654, 688, 780, 1000
Bst2UI	CCWGG	5 cut(s)	177, 358, 438, 570, 705
Bst4CI	ACNGT	5 cut(s)	453, 461, 601, 719, 917
Bst6I	CTCTTC	2 cut(s)	108, 345
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	987
BstDEI	CTNAG	5 cut(s)	37, 309, 367, 660, 948
BstDSI	CCRYGG	1 cut(s)	916
BstF5I	GGATG	2 cut(s)	246, 331
BstFNI	CGCG	2 cut(s)	62, 637
BstH2I	RGCGCY	2 cut(s)	474, 856
BstHHI	GCGC	3 cut(s)	473, 637, 855
BstKTI	GATC	7 cut(s)	19, 324, 622, 657, 691, 783, 1003
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	7 cut(s)	16, 321, 619, 654, 688, 780, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 479, 852
BstNI	CCWGG	5 cut(s)	177, 358, 438, 570, 705
BstSCI	CCNGG	5 cut(s)	175, 356, 436, 568, 703
BstSFI	CTRYAG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	730
BstUI	CGCG	2 cut(s)	62, 637
BstV1I	GCAGC	4 cut(s)	301, 598, 644, 842
BstX2I	RGATCY	2 cut(s)	321, 1000
BstXI	CCANNNNNNTGG	2 cut(s)	176, 417
BstYI	RGATCY	2 cut(s)	321, 1000
BsuRI	GGCC	6 cut(s)	168, 409, 421, 482, 489, 985
BtgI	CCRYGG	1 cut(s)	916
BtgZI	GCGATG	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	246, 331
BtsI	GCAGTG	1 cut(s)	1037
BtsIMutI	CAGTG	8 cut(s)	45, 120, 162, 550, 581, 657, 945, 1037
Cac8I	GCNNGC	1 cut(s)	987
CfoI	GCGC	3 cut(s)	473, 637, 855
Cfr10I	RCCGGY	2 cut(s)	530, 985
Cfr13I	GGNCC	4 cut(s)	223, 449, 593, 976
Csp6I	GTAC	4 cut(s)	99, 379, 401, 454
CviAII	CATG	4 cut(s)	754, 872, 997, 1021
CviQI	GTAC	4 cut(s)	99, 379, 401, 454
DdeI	CTNAG	5 cut(s)	37, 309, 367, 660, 948
DpnI	GATC	7 cut(s)	18, 323, 621, 656, 690, 782, 1002
DpnII	GATC	7 cut(s)	16, 321, 619, 654, 688, 780, 1000
EaeI	YGGCCR	3 cut(s)	166, 407, 487
Eam1104I	CTCTTC	2 cut(s)	108, 345
EarI	CTCTTC	2 cut(s)	108, 345
Eco147I	AGGCCT	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	357
Eco32I	GATATC	2 cut(s)	43, 434
Eco47I	GGWCC	4 cut(s)	223, 449, 593, 976
Eco57I	CTGAAG	2 cut(s)	310, 369
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	5 cut(s)	175, 356, 436, 568, 703
EcoRV	GATATC	2 cut(s)	43, 434
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	4 cut(s)	757, 875, 1000, 1024
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	3 cut(s)	236, 462, 956
FatI	CATG	4 cut(s)	753, 871, 996, 1020
FauNDI	CATATG	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	780
Fnu4HI	GCNGC	5 cut(s)	315, 612, 633, 831, 856
FokI	GGATG	2 cut(s)	233, 318
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	5 cut(s)	315, 612, 633, 831, 856
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	3 cut(s)	472, 636, 854
GluI	GCNGC	5 cut(s)	315, 612, 633, 831, 856
GsuI	CTGGAG	5 cut(s)	198, 300, 459, 636, 690
HaeII	RGCGCY	2 cut(s)	474, 856
HaeIII	GGCC	6 cut(s)	168, 409, 421, 482, 489, 985
HapII	CCGG	4 cut(s)	531, 864, 979, 986
HhaI	GCGC	3 cut(s)	473, 637, 855
Hin1II	CATG	4 cut(s)	757, 875, 1000, 1024
Hin6I	GCGC	3 cut(s)	471, 635, 853
HinP1I	GCGC	3 cut(s)	471, 635, 853
HindIII	AAGCTT	2 cut(s)	516, 800
HinfI	GANTC	1 cut(s)	503
HpaII	CCGG	4 cut(s)	531, 864, 979, 986
HphI	GGTGA	5 cut(s)	569, 719, 790, 853, 1006
Hpy166II	GTNNAC	2 cut(s)	381, 728
Hpy188I	TCNGA	2 cut(s)	40, 693
Hpy188III	TCNNGA	3 cut(s)	335, 784, 1045
Hpy8I	GTNNAC	2 cut(s)	381, 728
HpyAV	CCTTC	5 cut(s)	135, 758, 781, 836, 950
HpyCH4III	ACNGT	5 cut(s)	453, 461, 601, 719, 917
HpyCH4V	TGCA	5 cut(s)	110, 317, 391, 728, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 479, 852
HpyF3I	CTNAG	5 cut(s)	37, 309, 367, 660, 948
Hsp92II	CATG	4 cut(s)	757, 875, 1000, 1024
HspAI	GCGC	3 cut(s)	471, 635, 853
KflI	GGGWCCC	1 cut(s)	223
KroI	GCCGGC	1 cut(s)	985
KroNI	GCCGGC	1 cut(s)	987
Ksp22I	TGATCA	1 cut(s)	780
Kzo9I	GATC	7 cut(s)	16, 321, 619, 654, 688, 780, 1000
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	3 cut(s)	178, 440, 920
Lsp1109I	GCAGC	4 cut(s)	301, 598, 644, 842
LweI	GCATC	2 cut(s)	558, 615
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	4 cut(s)	491, 638, 707, 1012
MalI	GATC	7 cut(s)	18, 323, 621, 656, 690, 782, 1002
MboI	GATC	7 cut(s)	16, 321, 619, 654, 688, 780, 1000
MboII	GAAGA	4 cut(s)	95, 194, 316, 362
MfeI	CAATTG	2 cut(s)	411, 792
MflI	RGATCY	2 cut(s)	321, 1000
MhlI	GDGCHC	3 cut(s)	357, 445, 730
MlsI	TGGCCA	2 cut(s)	168, 409
MluCI	AATT	6 cut(s)	288, 411, 581, 699, 736, 792
MluNI	TGGCCA	2 cut(s)	168, 409
MmeI	TCCRAC	2 cut(s)	317, 571
Mox20I	TGGCCA	2 cut(s)	168, 409
MroNI	GCCGGC	1 cut(s)	985
MscI	TGGCCA	2 cut(s)	168, 409
MslI	CAYNNNNRTG	4 cut(s)	251, 336, 898, 1019
Msp20I	TGGCCA	2 cut(s)	168, 409
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	4 cut(s)	531, 864, 979, 986
MspR9I	CCNGG	5 cut(s)	177, 358, 438, 570, 705
MunI	CAATTG	2 cut(s)	411, 792
MvaI	CCWGG	5 cut(s)	177, 358, 438, 570, 705
MvnI	CGCG	2 cut(s)	62, 637
MwoI	GCNNNNNNNGC	3 cut(s)	314, 479, 852
NaeI	GCCGGC	1 cut(s)	987
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	7 cut(s)	16, 321, 619, 654, 688, 780, 1000
NgoMIV	GCCGGC	1 cut(s)	985
NlaIII	CATG	4 cut(s)	757, 875, 1000, 1024
NlaIV	GGNNCC	4 cut(s)	224, 225, 450, 1002
NmuCI	GTSAC	3 cut(s)	491, 707, 1012
PceI	AGGCCT	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	987
PfeI	GAWTC	1 cut(s)	503
PflMI	CCANNNNNTGG	2 cut(s)	602, 704
PfoI	TCCNGGA	2 cut(s)	175, 436
PkrI	GCNGC	5 cut(s)	316, 613, 634, 832, 857
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	5 cut(s)	175, 356, 436, 568, 703
PspGI	CCWGG	5 cut(s)	175, 356, 436, 568, 703
PspN4I	GGNNCC	4 cut(s)	224, 225, 450, 1002
PspPI	GGNCC	4 cut(s)	223, 449, 593, 976
PspPPI	RGGWCCY	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	321, 1000
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	4 cut(s)	100, 380, 402, 455
RsaNI	GTAC	4 cut(s)	99, 379, 401, 454
RseI	CAYNNNNRTG	4 cut(s)	251, 336, 898, 1019
SapI	GCTCTTC	1 cut(s)	345
SatI	GCNGC	5 cut(s)	315, 612, 633, 831, 856
Sau3AI	GATC	7 cut(s)	16, 321, 619, 654, 688, 780, 1000
Sau96I	GGNCC	4 cut(s)	223, 449, 593, 976
ScrFI	CCNGG	5 cut(s)	177, 358, 438, 570, 705
SduI	GDGCHC	3 cut(s)	357, 445, 730
SfaNI	GCATC	2 cut(s)	558, 615
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	4 cut(s)	223, 449, 593, 976
SmiMI	CAYNNNNRTG	4 cut(s)	251, 336, 898, 1019
Sse9I	AATT	6 cut(s)	288, 411, 581, 699, 736, 792
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	2 cut(s)	62, 856
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	5 cut(s)	175, 356, 436, 568, 703
TaaI	ACNGT	5 cut(s)	453, 461, 601, 719, 917
TaqI	TCGA	1 cut(s)	926
TasI	AATT	6 cut(s)	288, 411, 581, 699, 736, 792
TatI	WGTACW	3 cut(s)	98, 378, 400
TauI	GCSGC	1 cut(s)	858
TfiI	GAWTC	1 cut(s)	503
TscAI	CASTG	8 cut(s)	52, 120, 169, 550, 581, 664, 952, 1044
TseFI	GTSAC	3 cut(s)	491, 707, 1012
TseI	GCWGC	4 cut(s)	314, 611, 632, 830
Tsp45I	GTSAC	3 cut(s)	491, 707, 1012
TspDTI	ATGAA	2 cut(s)	672, 888
TspRI	CASTG	8 cut(s)	52, 120, 169, 550, 581, 664, 952, 1044
Van91I	CCANNNNNTGG	2 cut(s)	602, 704
VneI	GTGCAC	1 cut(s)	726
VpaK11BI	GGWCC	4 cut(s)	223, 449, 593, 976
XapI	RAATTY	1 cut(s)	581
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.