FvH4_1g30220

glutamine synthetase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
23935523 .. 23938440
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g30220.t1

Sequence Viewer

Length: 1071 bp
ATGTCTTTGCTCACAGATCTCATCAACCTCGACCTCTCTGACTCCACTGACAAGATCATCGCCGAGTACATATGGATTGGTGGATCTGGCATGGACCTCAGAAGCAAAGCAAGGACTTTGCCAGGACCTGTTAGTGACCCCTCCAAACTCCCCAAATGGAACTATGATGGGTCCAGCACAGGCCAAGCTCCAGGGGAGGACAGTGAGGTCATCCTCTACCCTCAAGCCATTTTCAAGGACCCATTTAGGAGAGGCAACAACATCTTGGTTATGTGTGATGCTTACACTCCGGCTGGAGAACCAATTCCAACCAACAAGAGAAATGCTGCAGCAAAGATATTCAGCCATCCCGGTGTTGTTGCGGAAGTGCCCTGGTATGGTCTGGAGCAAGAGTACACCTTGTTGCAGAAAGATGTGAACTGGCCCCTTGGCTGGCCAATTGGTGGTTTTCCTGGCCCTCAGGGACCGTACTACTGTGCTGCCGGCGCTGACAAGGCATTTGGGCGTGACATTGTTGATGCTCATTACAAGGCCTGCATTTATGCTGGAATCAACATCAGTGGCATTAACGGTGAAGTCATGCCAGGACAGTGGGAGTTTCAAGTTGGTCCTTCAGTTGGCATCTCTGCGGGTGATGAATTGTGGGTTGCTCGTTATATTTTGGAGAGGATCACAGAGATTGCTGGAGTGGTTCTTTCTTTTGATCCCAAGCCAATCCCTGGTGATTGGAATGGAGCTGGGGCTCACACAAATTACAGTACTAAATCCATGCGAAACGAAGGAGGCTATGAAATCATCAAGAAAGCAATTGAGAAGCTGGGACTAAGGCACAAAGAACACATTGCAGCATATGGAGAAGGCAACGAACGCCGTTTGACAGGAAAACATGAAACAGCTGACATTAATACCTTCAAATGGGGAGTTGCAAACCGTGGTGCTTCTATCCGTGTTGGGCGTGACACAGAGAAAGAGGGCAAGGGATACTTTGAAGACAGGAGGCCTGCTTCCAACATGGATCCATATGTGGTAACTTCTATGATTGCTGAGACCACTATTGTGTGGAAGCCATAA

Protein Analysis

357

Amino Acids

39.05

Weight (kDa)

5.64

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 54 - 97 1.9e-08 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 126 - 347 3e-13 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AccB7I CCANNNNNTGG 2 cut(s) 443, 719
AciI CCGC 2 cut(s) 362, 629
AclWI GGATC 5 cut(s) 91, 677, 698, 1010, 1023
AcoI YGGCCR 1 cut(s) 434
AcuI CTGAAG 1 cut(s) 597
AfaI GTAC 4 cut(s) 68, 395, 470, 760
AfiI CCNNNNNNNGG 6 cut(s) 377, 432, 443, 617, 719, 915
AgsI TTSAA 4 cut(s) 235, 602, 913, 989
AjnI CCWGG 6 cut(s) 121, 190, 371, 451, 583, 718
AleI CACNNNNGTG 1 cut(s) 1055
AluBI AGCT 4 cut(s) 188, 737, 817, 896
AluI AGCT 4 cut(s) 188, 737, 817, 896
Alw26I GTCTC 1 cut(s) 1040
AlwI GGATC 5 cut(s) 91, 677, 698, 1010, 1023
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 6 cut(s) 181, 422, 434, 454, 531, 998
ApeKI GCWGC 4 cut(s) 326, 329, 479, 845
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AseI ATTAAT 1 cut(s) 903
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 488
AspS9I GGNCC 8 cut(s) 94, 125, 171, 238, 423, 455, 464, 608
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 3 cut(s) 584, 644, 734
AvaII GGWCC 6 cut(s) 94, 125, 171, 238, 464, 608
AxyI CCTNAGG 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 372
BalI TGGCCA 1 cut(s) 436
BamHI GGATCC 1 cut(s) 1015
BanII GRGCYC 1 cut(s) 745
BbsI GAAGAC 1 cut(s) 996
BbvI GCAGC 4 cut(s) 313, 341, 466, 857
BccI CCATC 2 cut(s) 161, 354
BceAI ACGGC 1 cut(s) 855
BciT130I CCWGG 6 cut(s) 123, 192, 373, 453, 585, 720
BciVI GTATCC 1 cut(s) 974
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 1040
BfmI CTRYAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 489
BfuI GTATCC 1 cut(s) 974
BglII AGATCT 1 cut(s) 16
BisI GCNGC 4 cut(s) 327, 330, 480, 846
BlsI GCNGC 4 cut(s) 328, 331, 481, 847
BmcAI AGTACT 1 cut(s) 760
Bme1390I CCNGG 7 cut(s) 123, 192, 351, 373, 453, 585, 720
Bme18I GGWCC 6 cut(s) 94, 125, 171, 238, 464, 608
BmgT120I GGNCC 8 cut(s) 94, 125, 171, 238, 423, 455, 464, 608
BmiI GGNNCC 5 cut(s) 172, 240, 425, 465, 1017
BmrFI CCNGG 7 cut(s) 123, 192, 351, 373, 453, 585, 720
BmsI GCATC 3 cut(s) 268, 508, 630
BpiI GAAGAC 1 cut(s) 996
BpmI CTGGAG 4 cut(s) 174, 315, 404, 705
BpuEI CTTGAG 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 5 cut(s) 191, 371, 427, 718, 931
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 6 cut(s) 377, 432, 443, 617, 719, 915
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 425
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 6 cut(s) 123, 192, 373, 453, 585, 720
BseDI CCNNGG 5 cut(s) 191, 371, 427, 718, 931
BseGI GGATG 2 cut(s) 210, 346
BseLI CCNNNNNNNGG 6 cut(s) 377, 432, 443, 617, 719, 915
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 3 cut(s) 112, 473, 1035
BseNI ACTGG 1 cut(s) 425
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 4 cut(s) 313, 341, 466, 857
BseYI CCCAGC 2 cut(s) 737, 817
BshFI GGCC 6 cut(s) 183, 424, 436, 456, 533, 1000
BsiSI CCGG 3 cut(s) 290, 351, 483
BslFI GGGAC 2 cut(s) 477, 834
BslI CCNNNNNNNGG 6 cut(s) 377, 432, 443, 617, 719, 915
BsmAI GTCTC 1 cut(s) 1040
BsmFI GGGAC 2 cut(s) 477, 834
BsnI GGCC 6 cut(s) 183, 424, 436, 456, 533, 1000
Bso31I GGTCTC 1 cut(s) 1040
Bsp1286I GDGCHC 2 cut(s) 372, 745
Bsp143I GATC 6 cut(s) 16, 54, 83, 669, 703, 1015
BspACI CCGC 2 cut(s) 362, 629
BspANI GGCC 6 cut(s) 183, 424, 436, 456, 533, 1000
BspCNI CTCAG 3 cut(s) 111, 472, 1036
BspLI GGNNCC 5 cut(s) 172, 240, 425, 465, 1017
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 5 cut(s) 91, 677, 698, 1010, 1023
BspTNI GGTCTC 1 cut(s) 1040
BsrDI GCAATG 1 cut(s) 840
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 5 cut(s) 191, 371, 427, 718, 931
BssMI GATC 6 cut(s) 16, 54, 83, 669, 703, 1015
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 6 cut(s) 123, 192, 373, 453, 585, 720
Bst4CI ACNGT 7 cut(s) 203, 468, 476, 572, 591, 758, 932
BstC8I GCNNGC 4 cut(s) 434, 484, 535, 1002
BstDEI CTNAG 4 cut(s) 98, 459, 824, 1044
BstDSI CCRYGG 1 cut(s) 931
BstF5I GGATG 2 cut(s) 210, 346
BstH2I RGCGCY 1 cut(s) 489
BstHHI GCGC 1 cut(s) 488
BstKTI GATC 6 cut(s) 19, 57, 86, 672, 706, 1018
BstMAI GTCTC 1 cut(s) 1040
BstMBI GATC 6 cut(s) 16, 54, 83, 669, 703, 1015
BstMWI GCNNNNNNNGC 3 cut(s) 485, 494, 867
BstNI CCWGG 6 cut(s) 123, 192, 373, 453, 585, 720
BstSCI CCNGG 7 cut(s) 121, 190, 349, 371, 451, 583, 718
BstSFI CTRYAG 1 cut(s) 327
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 4 cut(s) 313, 341, 466, 857
BstV2I GAAGAC 1 cut(s) 996
BstX2I RGATCY 3 cut(s) 16, 83, 1015
BstXI CCANNNNNNTGG 1 cut(s) 591
BstYI RGATCY 3 cut(s) 16, 83, 1015
Bsu36I CCTNAGG 1 cut(s) 459
BsuI GTATCC 1 cut(s) 974
BsuRI GGCC 6 cut(s) 183, 424, 436, 456, 533, 1000
BtgI CCRYGG 1 cut(s) 931
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 210, 346
BtsIMutI CAGTG 4 cut(s) 45, 208, 565, 596
Cac8I GCNNGC 4 cut(s) 434, 484, 535, 1002
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 1 cut(s) 488
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 8 cut(s) 94, 125, 171, 238, 423, 455, 464, 608
Csp6I GTAC 4 cut(s) 67, 394, 469, 759
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 5 cut(s) 91, 580, 769, 887, 1012
CviQI GTAC 4 cut(s) 67, 394, 469, 759
DdeI CTNAG 4 cut(s) 98, 459, 824, 1044
DpnI GATC 6 cut(s) 18, 56, 85, 671, 705, 1017
DpnII GATC 6 cut(s) 16, 54, 83, 669, 703, 1015
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 427
Eco147I AGGCCT 2 cut(s) 533, 1000
Eco24I GRGCYC 1 cut(s) 745
Eco31I GGTCTC 1 cut(s) 1040
Eco47I GGWCC 6 cut(s) 94, 125, 171, 238, 464, 608
Eco57I CTGAAG 1 cut(s) 597
Eco81I CCTNAGG 1 cut(s) 459
EcoO109I RGGNCCY 2 cut(s) 125, 238
EcoRII CCWGG 6 cut(s) 121, 190, 371, 451, 583, 718
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 745
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 5 cut(s) 94, 583, 772, 890, 1015
FalI AAGNNNNNCTT 2 cut(s) 968, 1000
FaqI GGGAC 2 cut(s) 477, 834
FatI CATG 5 cut(s) 90, 579, 768, 886, 1011
FauI CCCGC 1 cut(s) 622
FauNDI CATATG 3 cut(s) 71, 850, 1021
Fnu4HI GCNGC 4 cut(s) 327, 330, 480, 846
FokI GGATG 2 cut(s) 197, 333
FriOI GRGCYC 1 cut(s) 745
Fsp4HI GCNGC 4 cut(s) 327, 330, 480, 846
GlaI GCGC 1 cut(s) 487
GluI GCNGC 4 cut(s) 327, 330, 480, 846
GsaI CCCAGC 2 cut(s) 741, 821
GsuI CTGGAG 4 cut(s) 174, 315, 404, 705
HaeII RGCGCY 1 cut(s) 489
HaeIII GGCC 6 cut(s) 183, 424, 436, 456, 533, 1000
HapII CCGG 3 cut(s) 290, 351, 483
HhaI GCGC 1 cut(s) 488
Hin1II CATG 5 cut(s) 94, 583, 772, 890, 1015
Hin6I GCGC 1 cut(s) 486
HinP1I GCGC 1 cut(s) 486
HinfI GANTC 2 cut(s) 41, 549
HpaII CCGG 3 cut(s) 290, 351, 483
HphI GGTGA 3 cut(s) 584, 644, 734
Hpy166II GTNNAC 2 cut(s) 396, 418
Hpy188I TCNGA 2 cut(s) 40, 101
Hpy188III TCNNGA 2 cut(s) 383, 799
Hpy8I GTNNAC 2 cut(s) 396, 418
HpyAV CCTTC 4 cut(s) 621, 773, 851, 919
HpyCH4III ACNGT 7 cut(s) 203, 468, 476, 572, 591, 758, 932
HpyCH4V TGCA 5 cut(s) 329, 406, 537, 845, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 494, 867
HpyF3I CTNAG 4 cut(s) 98, 459, 824, 1044
Hsp92II CATG 5 cut(s) 94, 583, 772, 890, 1015
HspAI GCGC 1 cut(s) 486
KroI GCCGGC 1 cut(s) 482
KroNI GCCGGC 1 cut(s) 484
Kzo9I GATC 6 cut(s) 16, 54, 83, 669, 703, 1015
LmnI GCTCC 3 cut(s) 193, 385, 734
Lsp1109I GCAGC 4 cut(s) 313, 341, 466, 857
LweI GCATC 3 cut(s) 268, 508, 630
MaeIII GTNAC 4 cut(s) 134, 506, 956, 1027
MalI GATC 6 cut(s) 18, 56, 85, 671, 705, 1017
MboI GATC 6 cut(s) 16, 54, 83, 669, 703, 1015
MboII GAAGA 1 cut(s) 1001
MfeI CAATTG 2 cut(s) 438, 807
MflI RGATCY 3 cut(s) 16, 83, 1015
MhlI GDGCHC 2 cut(s) 372, 745
MlsI TGGCCA 1 cut(s) 436
MluCI AATT 5 cut(s) 303, 438, 638, 751, 807
MluNI TGGCCA 1 cut(s) 436
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 332, 1032
Mox20I TGGCCA 1 cut(s) 436
MroNI GCCGGC 1 cut(s) 482
MroXI GAANNNNTTC 1 cut(s) 303
MscI TGGCCA 1 cut(s) 436
MseI TTAA 2 cut(s) 567, 903
MslI CAYNNNNRTG 2 cut(s) 351, 1055
Msp20I TGGCCA 1 cut(s) 436
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 3 cut(s) 290, 351, 483
MspR9I CCNGG 7 cut(s) 123, 192, 351, 373, 453, 585, 720
MunI CAATTG 2 cut(s) 438, 807
MvaI CCWGG 6 cut(s) 123, 192, 373, 453, 585, 720
MwoI GCNNNNNNNGC 3 cut(s) 485, 494, 867
NaeI GCCGGC 1 cut(s) 484
NciI CCSGG 1 cut(s) 351
NdeI CATATG 3 cut(s) 71, 850, 1021
NdeII GATC 6 cut(s) 16, 54, 83, 669, 703, 1015
NgoMIV GCCGGC 1 cut(s) 482
NlaIII CATG 5 cut(s) 94, 583, 772, 890, 1015
NlaIV GGNNCC 5 cut(s) 172, 240, 425, 465, 1017
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 3 cut(s) 134, 506, 956
OliI CACNNNNGTG 1 cut(s) 1055
PceI AGGCCT 2 cut(s) 533, 1000
PdiI GCCGGC 1 cut(s) 484
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 549
PflMI CCANNNNNTGG 2 cut(s) 443, 719
PkrI GCNGC 4 cut(s) 328, 331, 481, 847
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PpuMI RGGWCCY 2 cut(s) 125, 238
PshBI ATTAAT 1 cut(s) 903
Psp5II RGGWCCY 2 cut(s) 125, 238
Psp6I CCWGG 6 cut(s) 121, 190, 371, 451, 583, 718
PspFI CCCAGC 2 cut(s) 737, 817
PspGI CCWGG 6 cut(s) 121, 190, 371, 451, 583, 718
PspN4I GGNNCC 5 cut(s) 172, 240, 425, 465, 1017
PspPI GGNCC 8 cut(s) 94, 125, 171, 238, 423, 455, 464, 608
PspPPI RGGWCCY 2 cut(s) 125, 238
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 3 cut(s) 16, 83, 1015
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 4 cut(s) 68, 395, 470, 760
RsaNI GTAC 4 cut(s) 67, 394, 469, 759
RseI CAYNNNNRTG 2 cut(s) 351, 1055
SaqAI TTAA 2 cut(s) 567, 903
SatI GCNGC 4 cut(s) 327, 330, 480, 846
Sau3AI GATC 6 cut(s) 16, 54, 83, 669, 703, 1015
Sau96I GGNCC 8 cut(s) 94, 125, 171, 238, 423, 455, 464, 608
ScaI AGTACT 1 cut(s) 760
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 7 cut(s) 123, 192, 351, 373, 453, 585, 720
SduI GDGCHC 2 cut(s) 372, 745
SfaNI GCATC 3 cut(s) 268, 508, 630
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 6 cut(s) 94, 125, 171, 238, 464, 608
SmiMI CAYNNNNRTG 2 cut(s) 351, 1055
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 5 cut(s) 303, 438, 638, 751, 807
SseBI AGGCCT 2 cut(s) 533, 1000
SsiI CCGC 2 cut(s) 362, 629
StuI AGGCCT 2 cut(s) 533, 1000
StyD4I CCNGG 7 cut(s) 121, 190, 349, 371, 451, 583, 718
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 7 cut(s) 203, 468, 476, 572, 591, 758, 932
TaqI TCGA 1 cut(s) 30
TasI AATT 5 cut(s) 303, 438, 638, 751, 807
TatI WGTACW 3 cut(s) 66, 393, 758
TfiI GAWTC 1 cut(s) 549
Tru1I TTAA 2 cut(s) 567, 903
Tru9I TTAA 2 cut(s) 567, 903
TscAI CASTG 4 cut(s) 52, 208, 565, 596
TseFI GTSAC 3 cut(s) 134, 506, 956
TseI GCWGC 4 cut(s) 326, 329, 479, 845
Tsp45I GTSAC 3 cut(s) 134, 506, 956
TspDTI ATGAA 3 cut(s) 651, 804, 903
TspGWI ACGGA 1 cut(s) 935
TspRI CASTG 4 cut(s) 52, 208, 565, 596
Van91I CCANNNNNTGG 2 cut(s) 443, 719
VpaK11BI GGWCC 6 cut(s) 94, 125, 171, 238, 464, 608
VspI ATTAAT 1 cut(s) 903
XmnI GAANNNNTTC 1 cut(s) 303
ZrmI AGTACT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.