Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Reverse (-)

23274779 .. 23279128

Gene Structure 4350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0247600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAAATAAACTTGGGAAAGTTGGCGTTTGACCTCGACTTTCATCCATCGGAGCAATTAGTGACTACAGGTCTCATCGATGGCGACCTTCACTTGTACCGATATTCATCTGGTTCAGTACCTGAAAGGGTGTTGGAAGTTCATGCACATAGCGAATCTTGCAGAGCTGCTCGGTTCGTCAACGGTGGCAGTGCCATTTTGACGGGGTCTCCAGACCACACAATTCTTGCAACGGATGTGGAAACTGGTTCTGCTATCGCTCGCCTTGAAAATGCTCATGAGGATGCAATCAATAGACTTATAAACTTGACCGCATCTACCATTGCCTCTGGAGATGATGGAGGCTGTATTAAGGTCTGGGATACCAGACAACGATCTTGCTGCAATTCCTTTAAAGCTCATGAGGACTACATCTCCGATATGACTTTTTCAGCTGATTCCATGAAACTCTTGGGAACTAGTGGGGATGGAACTCTGTCTGTTTGCAATCTTCGAAGAAATAAGGTCCAAGATAAATCTGAGTTTTCCGAAGACGAGCTACTGTCTGTTGTTATCATGAAGAATGGTCAGAAAGTTATTTGCAGCTCACAAACTGGGAATATATTGTTGTATTCATGGGGTTGTTTCAAGGATTGCAGTGATCGTTTTATTGATCTCTCTCCAAATTCTGTTGATGCTTTGTTGAAGCTTGATGAAGATAGACTTATCGCTGGATCTGAGACCGGACTTATCAGCCTAGTAGGCATATTACCAAACAGAATCATCCAACCAATTGCAGAGCACTCAGAGTATCCGGTAGAGCGTCTTGCTTTTTCTCATGATAAGAAGTTCCTGGGCAGTATAGCACATGATCAGATGTTGAAGCTGTGGGATATGGATGATATATTGCAAGGCTCTGGAAATACTTCAAGGACTCAAGCATCTGTGGTGGACAGTGATAGTGATGAGATGGATACAGATATTAATACTCCAAAGTTTAGAAAAGGAACAAAGAGAAAAAATGCAAGCAAAGATCATGTTATGGGTTCACACAACTTTTTTGCCGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

350

Amino Acids

38.44

Weight (kDa)

5.08

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	2 - 293	2.5e-95	WDR55
Beta-prop_WDR3_1st	PF25173	12 - 161	1.5e-18	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	12 - 191	2.8e-16	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	12 - 173	2.3e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	14 - 204	3.8e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd	PF25168	21 - 207	4e-11	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	28 - 168	2.3e-12	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	44 - 165	4.6e-09	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	47 - 206	6.5e-18	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	50 - 293	3.8e-24	THOC3 beta-propeller domain
EIF3I	PF24805	85 - 170	8.8e-06	EIF3I
Beta-prop_WDR3_1st	PF25173	106 - 240	1.2e-11	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	106 - 211	2.3e-06	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	113 - 240	6.6e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st	PF24817	133 - 294	5.9e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	168 - 294	3.4e-06	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	721
AcsI	RAATTY	1 cut(s)	664
AfaI	GTAC	2 cut(s)	98, 120
AgsI	TTSAA	5 cut(s)	269, 628, 685, 862, 909
AhdI	GACNNNNNGTC	1 cut(s)	69
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	831
AluBI	AGCT	7 cut(s)	167, 398, 434, 538, 585, 688, 865
AluI	AGCT	7 cut(s)	167, 398, 434, 538, 585, 688, 865
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	3 cut(s)	77, 213, 713
AlwI	GGATC	1 cut(s)	721
AlwNI	CAGNNNCTG	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	167, 381, 582
ApoI	RAATTY	1 cut(s)	664
AseI	ATTAAT	1 cut(s)	963
Asp700I	GAANNNNTTC	1 cut(s)	904
AspS9I	GGNCC	1 cut(s)	505
AsuII	TTCGAA	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	505
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	3 cut(s)	154, 368, 594
BccI	CCATC	5 cut(s)	55, 74, 332, 461, 943
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciT130I	CCWGG	1 cut(s)	833
BciVI	GTATCC	3 cut(s)	355, 801, 946
BclI	TGATCA	1 cut(s)	850
BcoDI	GTCTC	3 cut(s)	77, 213, 713
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	2 cut(s)	459, 737
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	3 cut(s)	355, 801, 946
BglI	GCCNNNNNGGC	1 cut(s)	741
BisI	GCNGC	3 cut(s)	168, 382, 583
BlsI	GCNGC	3 cut(s)	169, 383, 584
Bme1390I	CCNGG	1 cut(s)	833
Bme18I	GGWCC	1 cut(s)	505
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	505
BmrFI	CCNGG	1 cut(s)	833
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	4 cut(s)	274, 323, 664, 929
BmuI	ACTGGG	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	2 cut(s)	195, 351
Bpu14I	TTCGAA	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	900
Bsa29I	ATCGAT	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	106
BsaI	GGTCTC	3 cut(s)	77, 213, 713
BsaJI	CCNNGG	1 cut(s)	832
BsaWI	WCCGGW	2 cut(s)	722, 793
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 398, 428
Bse1I	ACTGG	2 cut(s)	250, 598
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	833
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	832
BseGI	GGATG	6 cut(s)	43, 241, 289, 472, 762, 883
BseJI	GATNNNNATC	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	510, 708, 798
BseNI	ACTGG	2 cut(s)	250, 598
BseXI	GCAGC	3 cut(s)	154, 368, 594
BshVI	ATCGAT	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	783
BsiSI	CCGG	2 cut(s)	723, 794
BsmAI	GTCTC	3 cut(s)	77, 213, 713
Bso31I	GGTCTC	3 cut(s)	77, 213, 713
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	6 cut(s)	374, 640, 652, 713, 850, 1012
BspACI	CCGC	1 cut(s)	312
BspCNI	CTCAG	3 cut(s)	511, 709, 797
BspDI	ATCGAT	1 cut(s)	78
BspHI	TCATGA	4 cut(s)	277, 400, 555, 817
BspPI	GGATC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	493
BspTNI	GGTCTC	3 cut(s)	77, 213, 713
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	250, 598
BssECI	CCNNGG	1 cut(s)	832
BssMI	GATC	6 cut(s)	374, 640, 652, 713, 850, 1012
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	3 cut(s)	185, 543, 935
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	262, 1006
BstDEI	CTNAG	3 cut(s)	519, 717, 784
BstF5I	GGATG	6 cut(s)	43, 241, 289, 472, 762, 883
BstKTI	GATC	6 cut(s)	377, 643, 655, 716, 853, 1015
BstMAI	GTCTC	3 cut(s)	77, 213, 713
BstMBI	GATC	6 cut(s)	374, 640, 652, 713, 850, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 741
BstNI	CCWGG	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	831
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	154, 368, 594
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
Bsu15I	ATCGAT	1 cut(s)	78
BsuI	GTATCC	3 cut(s)	355, 801, 946
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	6 cut(s)	43, 241, 289, 472, 762, 883
BtsI	GCAGTG	2 cut(s)	196, 643
BtsIMutI	CAGTG	3 cut(s)	196, 643, 940
Cac8I	GCNNGC	2 cut(s)	262, 1006
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	4 cut(s)	277, 400, 555, 817
Cfr13I	GGNCC	1 cut(s)	505
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	1 cut(s)	791
Csp6I	GTAC	2 cut(s)	97, 119
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	9 cut(s)	143, 278, 401, 442, 556, 615, 818, 848, 1016
CviQI	GTAC	2 cut(s)	97, 119
DdeI	CTNAG	3 cut(s)	519, 717, 784
DpnI	GATC	6 cut(s)	376, 642, 654, 715, 852, 1014
DpnII	GATC	6 cut(s)	374, 640, 652, 713, 850, 1012
DraI	TTTAAA	1 cut(s)	394
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	69
Eco31I	GGTCTC	3 cut(s)	77, 213, 713
Eco47I	GGWCC	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	831
FaeI	CATG	9 cut(s)	146, 281, 404, 445, 559, 618, 821, 851, 1019
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FatI	CATG	9 cut(s)	142, 277, 400, 441, 555, 614, 817, 847, 1015
FbaI	TGATCA	1 cut(s)	850
Fnu4HI	GCNGC	3 cut(s)	168, 382, 583
FokI	GGATG	6 cut(s)	30, 248, 296, 479, 749, 890
Fsp4HI	GCNGC	3 cut(s)	168, 382, 583
FspBI	CTAG	2 cut(s)	459, 737
GluI	GCNGC	3 cut(s)	168, 382, 583
GsuI	CTGGAG	2 cut(s)	195, 351
HapII	CCGG	2 cut(s)	723, 794
HgaI	GACGC	1 cut(s)	791
Hin1II	CATG	9 cut(s)	146, 281, 404, 445, 559, 618, 821, 851, 1019
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	4 cut(s)	155, 437, 759, 913
HpaII	CCGG	2 cut(s)	723, 794
Hpy166II	GTNNAC	3 cut(s)	181, 931, 1028
Hpy188I	TCNGA	8 cut(s)	52, 418, 520, 529, 570, 718, 787, 855
Hpy188III	TCNNGA	7 cut(s)	212, 278, 330, 401, 556, 818, 897
Hpy8I	GTNNAC	3 cut(s)	181, 931, 1028
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	3 cut(s)	185, 543, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 741
HpyF3I	CTNAG	3 cut(s)	519, 717, 784
Hsp92II	CATG	9 cut(s)	146, 281, 404, 445, 559, 618, 821, 851, 1019
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	6 cut(s)	374, 640, 652, 713, 850, 1012
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	3 cut(s)	154, 368, 594
LweI	GCATC	4 cut(s)	274, 323, 664, 929
MaeI	CTAG	2 cut(s)	459, 737
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	6 cut(s)	376, 642, 654, 715, 852, 1014
MboI	GATC	6 cut(s)	374, 640, 652, 713, 850, 1012
MboII	GAAGA	5 cut(s)	482, 507, 542, 571, 707
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	1 cut(s)	783
MluCI	AATT	5 cut(s)	56, 222, 385, 664, 771
MlyI	GAGTC	1 cut(s)	907
MmeI	TCCRAC	2 cut(s)	114, 790
MnlI	CCTC	5 cut(s)	44, 274, 335, 337, 397
MroXI	GAANNNNTTC	1 cut(s)	904
MseI	TTAA	3 cut(s)	351, 393, 963
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	2 cut(s)	723, 794
MspR9I	CCNGG	1 cut(s)	833
MunI	CAATTG	1 cut(s)	771
MvaI	CCWGG	1 cut(s)	833
MwoI	GCNNNNNNNGC	2 cut(s)	159, 741
NdeII	GATC	6 cut(s)	374, 640, 652, 713, 850, 1012
NlaIII	CATG	9 cut(s)	146, 281, 404, 445, 559, 618, 821, 851, 1019
NmuCI	GTSAC	1 cut(s)	61
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	4 cut(s)	277, 400, 555, 817
PdmI	GAANNNNTTC	1 cut(s)	904
PfeI	GAWTC	3 cut(s)	155, 437, 759
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	169, 383, 584
PleI	GAGTC	1 cut(s)	907
PpsI	GAGTC	1 cut(s)	907
PshBI	ATTAAT	1 cut(s)	963
PsiI	TTATAA	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	831
PspGI	CCWGG	1 cut(s)	831
PspPI	GGNCC	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	713
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	98, 120
RsaNI	GTAC	2 cut(s)	97, 119
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	351, 393, 963
SatI	GCNGC	3 cut(s)	168, 382, 583
Sau3AI	GATC	6 cut(s)	374, 640, 652, 713, 850, 1012
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	1 cut(s)	907
ScrFI	CCNGG	1 cut(s)	833
SduI	GDGCHC	1 cut(s)	783
SfaNI	GCATC	4 cut(s)	274, 323, 664, 929
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	915
SmoI	CTYRAG	1 cut(s)	915
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	5 cut(s)	56, 222, 385, 664, 771
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	2 cut(s)	459, 737
StyD4I	CCNGG	1 cut(s)	831
TaaI	ACNGT	3 cut(s)	185, 543, 935
TaqI	TCGA	3 cut(s)	36, 78, 493
TasI	AATT	5 cut(s)	56, 222, 385, 664, 771
TfiI	GAWTC	3 cut(s)	155, 437, 759
Tru1I	TTAA	3 cut(s)	351, 393, 963
Tru9I	TTAA	3 cut(s)	351, 393, 963
TscAI	CASTG	3 cut(s)	196, 643, 940
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	3 cut(s)	167, 381, 582
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	7 cut(s)	32, 96, 131, 458, 572, 603, 708
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	3 cut(s)	196, 643, 940
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	505
VspI	ATTAAT	1 cut(s)	963
XapI	RAATTY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	904
XspI	CTAG	2 cut(s)	459, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.